Gene annotation
Transcriptome id Sobic.002G260700.1
Synonym Sb02g029540, VAN3, SFC, AGD3
Functional annotation ARF GTPase-activating domain-containing protein, putative, expressed
UniProt C5X5B2
Pfam PF00169 PF13637 PF03114 PF01412
Panther DB PTHR23180 PTHR23180:SF284
NCBI CDD -
KEGG Orthology K12489; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
Gene Ontology GO:0005737; cytoplasm GO:0005515protein binding GO:0005096GTPase activator activity


Orthologs (automatic annotation)
TAIR AT5G13300 : ARF GTPase-activating protein
RAP-DB (Rice) LOC_Os09g33600.1 : ARF GTPase-activating domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a005312 , Zm00025a040100 , Zm00025a058197 , Zm00025a030457 , Zm00025a036398 , Zm00025a047608
Brachypodium KQJ90968 , PNT64909 , KQJ99167
Barley HORVU7Hr1G055220.31 , HORVU7Hr1G055220.30 , HORVU7Hr1G055220.33 , HORVU7Hr1G055220.32 , HORVU7Hr1G055220.26 , HORVU7Hr1G055220.27 , HORVU7Hr1G055220.24 , HORVU7Hr1G055220.25 , HORVU7Hr1G055220.22 , HORVU7Hr1G055220.23 , HORVU7Hr1G055220.20 , HORVU7Hr1G055220.21 , HORVU7Hr1G055220.28 , HORVU7Hr1G055220.29 , HORVU5Hr1G077570.20 , HORVU5Hr1G077570.21 , HORVU5Hr1G077570.22 , HORVU5Hr1G077570.23 , HORVU5Hr1G077570.24 , HORVU7Hr1G055220.19 , HORVU7Hr1G055220.18 , HORVU7Hr1G055220.16 , HORVU7Hr1G055220.14 , HORVU7Hr1G055220.13 , HORVU7Hr1G055220.12 , HORVU7Hr1G055220.11 , HORVU7Hr1G055220.17 , HORVU7Hr1G055220.15 , HORVU7Hr1G055220.10 , HORVU5Hr1G077570.15 , HORVU5Hr1G077570.14 , HORVU5Hr1G077570.17 , HORVU5Hr1G077570.16 , HORVU5Hr1G077570.11 , HORVU5Hr1G077570.10 , HORVU5Hr1G077570.13 , HORVU5Hr1G077570.12 , HORVU5Hr1G077570.19 , HORVU5Hr1G077570.18 , HORVU5Hr1G077570.1 , HORVU5Hr1G077570.3 , HORVU5Hr1G077570.2 , HORVU5Hr1G077570.5 , HORVU5Hr1G077570.4 , HORVU5Hr1G077570.7 , HORVU5Hr1G077570.6 , HORVU5Hr1G077570.9 , HORVU5Hr1G077570.8 , HORVU7Hr1G055220.7 , HORVU7Hr1G055220.6 , HORVU7Hr1G055220.5 , HORVU7Hr1G055220.4 , HORVU7Hr1G055220.3 , HORVU7Hr1G055220.2 , HORVU7Hr1G055220.1 , HORVU7Hr1G055220.9 , HORVU7Hr1G055220.8
Wheat TraesCS7B02G161800 , TraesCS5B02G292200 , TraesCS7D02G264700 , TraesCS7D02G264700 , TraesCS7D02G264700 , TraesCS7A02G263800 , TraesCS7A02G263800 , TraesCS7A02G263800 , TraesCS5D02G300300 , TraesCS5D02G300300 , TraesCS5A02G293000 , TraesCS5A02G293000 , TraesCS7B02G161800 , TraesCS7B02G161800
Populus PNT53076


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G103500 ATMAP70 protein, putative, expressed -
2 Sobic.004G306100 expressed protein -
3 Sobic.002G418100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@bZIP transcription factor domain containing protein, expressed -
4 Sobic.003G397100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
5 Sobic.009G052100 tubulin/FtsZ domain containing protein, putative, expressed K10389: tubulin gamma
6 Sobic.003G315700 AAA-type ATPase family protein, putative, expressed -
7 Sobic.008G169400 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed -
8 Sobic.004G129500 expressed protein -
9 Sobic.010G052400 SET domain containing protein, expressed K11430: [histone H3]-lysine27 N-trimethyltransferase EZH2
10 Sobic.007G036800 xylosyltransferase, putative, expressed -
11 Sobic.001G361200 expressed protein -
12 Sobic.001G026800 polygalacturonase, putative, expressed -
13 Sobic.004G315700 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
14 Sobic.001G242300 expressed protein -
15 Sobic.001G381500 lung seven transmembrane domain containing protein, putative, expressed -
16 Sobic.004G084200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@calcium-binding mitochondrial carrier CBG00135, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
17 Sobic.002G271400 RNA recognition motif containing protein, putative, expressed -
18 Sobic.003G411700 heat shock protein DnaJ, putative, expressed -
19 Sobic.002G123600 expressed protein -
20 Sobic.001G507200 PIR, putative, expressed K05749: cytoplasmic FMR1 interacting protein


Gene co-expression network
sample Sobic002G260700 Sobic002G260700 Sobic010G103500 Sobic010G103500 Sobic002G260700--Sobic010G103500 Sobic004G306100 Sobic004G306100 Sobic002G260700--Sobic004G306100 Sobic002G418100 Sobic002G418100 Sobic002G260700--Sobic002G418100 Sobic003G397100 Sobic003G397100 Sobic002G260700--Sobic003G397100 Sobic009G052100 Sobic009G052100 Sobic002G260700--Sobic009G052100 Sobic003G315700 Sobic003G315700 Sobic002G260700--Sobic003G315700 Sobic008G169400 Sobic008G169400 Sobic002G260700--Sobic008G169400 Sobic004G129500 Sobic004G129500 Sobic002G260700--Sobic004G129500 Sobic010G052400 Sobic010G052400 Sobic002G260700--Sobic010G052400 Sobic010G103500--Sobic002G260700 Sobic010G103500--Sobic004G306100 Sobic003G411700 Sobic003G411700 Sobic010G103500--Sobic003G411700 Sobic010G103500--Sobic004G129500 Sobic007G036800 Sobic007G036800 Sobic010G103500--Sobic007G036800 Sobic001G296800 Sobic001G296800 Sobic010G103500--Sobic001G296800 Sobic004G315700 Sobic004G315700 Sobic010G103500--Sobic004G315700 Sobic002G271400 Sobic002G271400 Sobic010G103500--Sobic002G271400 Sobic010G103500--Sobic010G052400 Sobic004G306100--Sobic002G271400 Sobic004G306100--Sobic010G103500 Sobic004G306100--Sobic003G411700 Sobic004G306100--Sobic003G315700 Sobic006G127200 Sobic006G127200 Sobic004G306100--Sobic006G127200 Sobic003G409600 Sobic003G409600 Sobic004G306100--Sobic003G409600 Sobic004G306100--Sobic002G260700 Sobic002G123600 Sobic002G123600 Sobic004G306100--Sobic002G123600 Sobic004G306100--Sobic010G052400 Sobic002G418100--Sobic002G260700 Sobic002G418100--Sobic010G103500 Sobic004G000400 Sobic004G000400 Sobic002G418100--Sobic004G000400 Sobic003G009200 Sobic003G009200 Sobic002G418100--Sobic003G009200 Sobic002G418100--Sobic007G036800 Sobic010G186500 Sobic010G186500 Sobic002G418100--Sobic010G186500 Sobic002G268700 Sobic002G268700 Sobic002G418100--Sobic002G268700 Sobic001G348000 Sobic001G348000 Sobic002G418100--Sobic001G348000 Sobic002G418100--Sobic003G397100 Sobic001G242300 Sobic001G242300 Sobic003G397100--Sobic001G242300 Sobic003G397100--Sobic002G123600 Sobic003G397100--Sobic002G260700 Sobic008G090300 Sobic008G090300 Sobic003G397100--Sobic008G090300 Sobic003G397100--Sobic008G169400 Sobic008G112100 Sobic008G112100 Sobic003G397100--Sobic008G112100 Sobic010G143600 Sobic010G143600 Sobic003G397100--Sobic010G143600 Sobic001G448100 Sobic001G448100 Sobic003G397100--Sobic001G448100 Sobic008G031200 Sobic008G031200 Sobic003G397100--Sobic008G031200 Sobic009G052100--Sobic004G315700 Sobic004G156200 Sobic004G156200 Sobic009G052100--Sobic004G156200 Sobic001G507200 Sobic001G507200 Sobic009G052100--Sobic001G507200 Sobic009G049200 Sobic009G049200 Sobic009G052100--Sobic009G049200 Sobic006G071628 Sobic006G071628 Sobic009G052100--Sobic006G071628 Sobic010G250800 Sobic010G250800 Sobic009G052100--Sobic010G250800 Sobic009G052100--Sobic003G315700 Sobic010G252700 Sobic010G252700 Sobic009G052100--Sobic010G252700 Sobic003G420300 Sobic003G420300 Sobic009G052100--Sobic003G420300 Sobic008G148000 Sobic008G148000 Sobic003G315700--Sobic008G148000 Sobic006G193100 Sobic006G193100 Sobic003G315700--Sobic006G193100 Sobic003G315700--Sobic004G306100 Sobic002G290000 Sobic002G290000 Sobic003G315700--Sobic002G290000 Sobic009G202801 Sobic009G202801 Sobic003G315700--Sobic009G202801 Sobic004G328300 Sobic004G328300 Sobic003G315700--Sobic004G328300 Sobic003G315700--Sobic003G409600 Sobic002G113400 Sobic002G113400 Sobic003G315700--Sobic002G113400 Sobic003G315700--Sobic009G052100 Sobic001G079900 Sobic001G079900 Sobic008G169400--Sobic001G079900 Sobic003G153900 Sobic003G153900 Sobic008G169400--Sobic003G153900 Sobic007G031300 Sobic007G031300 Sobic008G169400--Sobic007G031300 Sobic009G141700 Sobic009G141700 Sobic008G169400--Sobic009G141700 Sobic002G370400 Sobic002G370400 Sobic008G169400--Sobic002G370400 Sobic001G494100 Sobic001G494100 Sobic008G169400--Sobic001G494100 Sobic002G293700 Sobic002G293700 Sobic008G169400--Sobic002G293700 Sobic009G158900 Sobic009G158900 Sobic008G169400--Sobic009G158900 Sobic008G169400--Sobic003G397100 Sobic004G129500--Sobic007G036800 Sobic004G129500--Sobic010G103500 Sobic004G129500--Sobic001G296800 Sobic003G028400 Sobic003G028400 Sobic004G129500--Sobic003G028400 Sobic004G129500--Sobic003G411700 Sobic002G426100 Sobic002G426100 Sobic004G129500--Sobic002G426100 Sobic004G129500--Sobic002G123600 Sobic002G043000 Sobic002G043000 Sobic004G129500--Sobic002G043000 Sobic001G361200 Sobic001G361200 Sobic004G129500--Sobic001G361200 Sobic010G052400--Sobic004G306100 Sobic010G052400--Sobic010G103500 Sobic010G052400--Sobic003G409600 Sobic010G052400--Sobic002G271400 Sobic010G052400--Sobic006G127200 Sobic010G052400--Sobic002G260700 Sobic004G001600 Sobic004G001600 Sobic010G052400--Sobic004G001600 Sobic010G052400--Sobic001G296800 Sobic001G425200 Sobic001G425200 Sobic010G052400--Sobic001G425200
Octagon: transcription factors


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