Gene annotation
Transcriptome id Sobic.002G418100.1,Sobic.002G418100.2
Synonym Sb02g042990
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
bZIP transcription factor domain containing protein, expressed
UniProt A0A1W0W7V1 , C5X5M0
Pfam PF00170
Panther DB PTHR13690 PTHR13690:SF84
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT2G40620 : Basic-leucine zipper (bZIP) transcription factor family protein
RAP-DB (Rice) LOC_Os07g48180.1 : bZIP transcription factor domain containing protein, expressed
MaizeGDB (Corn) Zm00025a015443 , Zm00025a052423 , Zm00025a002353 , Zm00025a049157
Brachypodium KQK21797 , KQK14630
Barley HORVU4Hr1G050190.5 , HORVU4Hr1G050190.4 , HORVU4Hr1G050190.1 , HORVU4Hr1G050190.3
Wheat TraesCS2B02G122700 , TraesCS4A02G135600 , TraesCS4A02G135600 , TraesCS4B02G169600 , TraesCS4B02G169600 , TraesCS4D02G171700 , TraesCS4D02G171700 , TraesCS2D02G105400 , TraesCS2D02G105400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G260700 ARF GTPase-activating domain-containing protein, putative, expressed K12489: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
2 Sobic.010G103500 ATMAP70 protein, putative, expressed -
3 Sobic.004G000400 OsPDIL1-4 protein disulfide isomerase PDIL1-4, expressed K09580: PDIA1, protein disulfide-isomerase A1
4 Sobic.003G009200 expressed protein -
5 Sobic.007G036800 xylosyltransferase, putative, expressed -
6 Sobic.010G186500 targeting protein for Xklp2, putative, expressed -
7 Sobic.002G268700 hydroxymethylglutaryl-CoA synthase, putative, expressed K01641: hydroxymethylglutaryl-CoA synthase
8 Sobic.001G348000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nodulation protein-related, putative, expressed -
9 Sobic.003G397100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
10 Sobic.009G014000 expressed protein -
11 Sobic.008G112100 Phospholipid synthesis protein 1 PLS1 (Zm)(PubMedID : 27208977)@acyltransferase, putative, expressed K13523: lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase
12 Sobic.004G129500 expressed protein -
13 Sobic.006G106600 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
14 Sobic.004G084200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@calcium-binding mitochondrial carrier CBG00135, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
15 Sobic.007G051400 transmembrane 9 superfamily member, putative, expressed -
16 Sobic.002G271400 RNA recognition motif containing protein, putative, expressed -
17 Sobic.010G172400 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
18 Sobic.004G306100 expressed protein -
19 Sobic.004G350200 KH domain containing protein, putative, expressed K14944: RNA-binding protein Nova
20 Sobic.007G186400 resistance protein, putative, expressed -


Gene co-expression network
sample Sobic002G418100 Sobic002G418100 Sobic002G260700 Sobic002G260700 Sobic002G418100--Sobic002G260700 Sobic010G103500 Sobic010G103500 Sobic002G418100--Sobic010G103500 Sobic004G000400 Sobic004G000400 Sobic002G418100--Sobic004G000400 Sobic003G009200 Sobic003G009200 Sobic002G418100--Sobic003G009200 Sobic007G036800 Sobic007G036800 Sobic002G418100--Sobic007G036800 Sobic010G186500 Sobic010G186500 Sobic002G418100--Sobic010G186500 Sobic002G268700 Sobic002G268700 Sobic002G418100--Sobic002G268700 Sobic001G348000 Sobic001G348000 Sobic002G418100--Sobic001G348000 Sobic003G397100 Sobic003G397100 Sobic002G418100--Sobic003G397100 Sobic002G260700--Sobic010G103500 Sobic004G306100 Sobic004G306100 Sobic002G260700--Sobic004G306100 Sobic002G260700--Sobic002G418100 Sobic002G260700--Sobic003G397100 Sobic009G052100 Sobic009G052100 Sobic002G260700--Sobic009G052100 Sobic003G315700 Sobic003G315700 Sobic002G260700--Sobic003G315700 Sobic008G169400 Sobic008G169400 Sobic002G260700--Sobic008G169400 Sobic004G129500 Sobic004G129500 Sobic002G260700--Sobic004G129500 Sobic010G052400 Sobic010G052400 Sobic002G260700--Sobic010G052400 Sobic010G103500--Sobic002G260700 Sobic010G103500--Sobic004G306100 Sobic003G411700 Sobic003G411700 Sobic010G103500--Sobic003G411700 Sobic010G103500--Sobic004G129500 Sobic010G103500--Sobic007G036800 Sobic001G296800 Sobic001G296800 Sobic010G103500--Sobic001G296800 Sobic004G315700 Sobic004G315700 Sobic010G103500--Sobic004G315700 Sobic002G271400 Sobic002G271400 Sobic010G103500--Sobic002G271400 Sobic010G103500--Sobic010G052400 Sobic006G106600 Sobic006G106600 Sobic004G000400--Sobic006G106600 Sobic002G173400 Sobic002G173400 Sobic004G000400--Sobic002G173400 Sobic007G186400 Sobic007G186400 Sobic004G000400--Sobic007G186400 Sobic009G120400 Sobic009G120400 Sobic004G000400--Sobic009G120400 Sobic004G350200 Sobic004G350200 Sobic004G000400--Sobic004G350200 Sobic004G000400--Sobic002G271400 Sobic004G215600 Sobic004G215600 Sobic004G000400--Sobic004G215600 Sobic002G123600 Sobic002G123600 Sobic004G000400--Sobic002G123600 Sobic010G257500 Sobic010G257500 Sobic004G000400--Sobic010G257500 Sobic001G507200 Sobic001G507200 Sobic003G009200--Sobic001G507200 Sobic009G049200 Sobic009G049200 Sobic003G009200--Sobic009G049200 Sobic003G311500 Sobic003G311500 Sobic003G009200--Sobic003G311500 Sobic004G034300 Sobic004G034300 Sobic003G009200--Sobic004G034300 Sobic003G009200--Sobic010G103500 Sobic007G051400 Sobic007G051400 Sobic003G009200--Sobic007G051400 Sobic003G009200--Sobic002G418100 Sobic004G231200 Sobic004G231200 Sobic003G009200--Sobic004G231200 Sobic008G192700 Sobic008G192700 Sobic003G009200--Sobic008G192700 Sobic007G036800--Sobic004G129500 Sobic007G036800--Sobic010G103500 Sobic004G145600 Sobic004G145600 Sobic007G036800--Sobic004G145600 Sobic008G112100 Sobic008G112100 Sobic007G036800--Sobic008G112100 Sobic010G059700 Sobic010G059700 Sobic007G036800--Sobic010G059700 Sobic007G010200 Sobic007G010200 Sobic007G036800--Sobic007G010200 Sobic007G036800--Sobic004G350200 Sobic007G036800--Sobic002G123600 Sobic004G256300 Sobic004G256300 Sobic007G036800--Sobic004G256300 Sobic003G319000 Sobic003G319000 Sobic010G186500--Sobic003G319000 Sobic010G186500--Sobic002G418100 Sobic010G186500--Sobic003G009200 Sobic010G186500--Sobic007G051400 Sobic003G312400 Sobic003G312400 Sobic010G186500--Sobic003G312400 Sobic006G189200 Sobic006G189200 Sobic010G186500--Sobic006G189200 Sobic010G186500--Sobic002G260700 Sobic001G026600 Sobic001G026600 Sobic010G186500--Sobic001G026600 Sobic004G331900 Sobic004G331900 Sobic010G186500--Sobic004G331900 Sobic002G232400 Sobic002G232400 Sobic002G268700--Sobic002G232400 Sobic002G268700--Sobic001G348000 Sobic002G268700--Sobic004G231200 Sobic004G069400 Sobic004G069400 Sobic002G268700--Sobic004G069400 Sobic007G048700 Sobic007G048700 Sobic002G268700--Sobic007G048700 Sobic010G080900 Sobic010G080900 Sobic002G268700--Sobic010G080900 Sobic002G070300 Sobic002G070300 Sobic002G268700--Sobic002G070300 Sobic004G064600 Sobic004G064600 Sobic002G268700--Sobic004G064600 Sobic002G426100 Sobic002G426100 Sobic002G268700--Sobic002G426100 Sobic001G348000--Sobic002G268700 Sobic001G192700 Sobic001G192700 Sobic001G348000--Sobic001G192700 Sobic001G348000--Sobic007G048700 Sobic008G132200 Sobic008G132200 Sobic001G348000--Sobic008G132200 Sobic001G347700 Sobic001G347700 Sobic001G348000--Sobic001G347700 Sobic005G210500 Sobic005G210500 Sobic001G348000--Sobic005G210500 Sobic001G348000--Sobic002G232400 Sobic006G271000 Sobic006G271000 Sobic001G348000--Sobic006G271000 Sobic001G286100 Sobic001G286100 Sobic001G348000--Sobic001G286100 Sobic001G242300 Sobic001G242300 Sobic003G397100--Sobic001G242300 Sobic003G397100--Sobic002G123600 Sobic003G397100--Sobic002G260700 Sobic008G090300 Sobic008G090300 Sobic003G397100--Sobic008G090300 Sobic003G397100--Sobic008G169400 Sobic003G397100--Sobic008G112100 Sobic010G143600 Sobic010G143600 Sobic003G397100--Sobic010G143600 Sobic001G448100 Sobic001G448100 Sobic003G397100--Sobic001G448100 Sobic008G031200 Sobic008G031200 Sobic003G397100--Sobic008G031200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.