Gene annotation
Transcriptome id Sobic.001G348000.1
Synonym Sb01g033350
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
nodulation protein-related, putative, expressed
UniProt C5WXM6
Pfam -
Panther DB PTHR32175 PTHR32175:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G15730 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os03g27760.1 : nodulation protein-related, putative, expressed
MaizeGDB (Corn) Zm00025a052124 , Zm00025a002749
Brachypodium PNT77286 , PNT77287 , KQK21401
Barley HORVU3Hr1G091830.8 , HORVU3Hr1G091830.9 , HORVU3Hr1G091830.2 , HORVU3Hr1G091830.3 , HORVU3Hr1G091830.7 , HORVU3Hr1G091830.4 , HORVU3Hr1G091830.5 , HORVU3Hr1G091830.10
Wheat TraesCS3D02G407500 , TraesCS3B02G447200 , TraesCS3A02G412800
Populus PNT27030 , PNT27027 , PNT27026 , PNT27025 , PNT36590 , PNT27029 , PNT27028


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cDNA sequences
Sobic.001G348000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G268700 hydroxymethylglutaryl-CoA synthase, putative, expressed K01641: hydroxymethylglutaryl-CoA synthase
2 Sobic.001G192700 major facilitator superfamily domain-containing protein 5, putative, expressed -
3 Sobic.007G048700 stomatin-like protein 2, putative, expressed -
4 Sobic.008G132200 tetratricopeptide repeat domain containing protein, expressed -
5 Sobic.001G347700 protein phosphotase protein, putative, expressed -
6 Sobic.005G210500 - K10901: BLM, RECQL3, bloom syndrome protein
7 Sobic.002G232400 clathrin adaptor complex small chain domain containing protein, expressed -
8 Sobic.006G271000 mis12 protein, expressed -
9 Sobic.001G286100 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
10 Sobic.007G201000 methyltransferase domain containing protein, expressed -
11 Sobic.001G327100 OsFBX157 - F-box domain containing protein, expressed -
12 Sobic.004G069400 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
13 Sobic.003G418400 expressed protein -
14 Sobic.002G167100 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
15 Sobic.002G070300 expressed protein -
16 Sobic.009G206600 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
17 Sobic.001G352800 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
18 Sobic.001G343000 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
19 Sobic.004G064600 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
20 Sobic.003G167000 protein phosphotase protein, putative, expressed -


Gene co-expression network
sample Sobic001G348000 Sobic001G348000 Sobic002G268700 Sobic002G268700 Sobic001G348000--Sobic002G268700 Sobic001G192700 Sobic001G192700 Sobic001G348000--Sobic001G192700 Sobic007G048700 Sobic007G048700 Sobic001G348000--Sobic007G048700 Sobic008G132200 Sobic008G132200 Sobic001G348000--Sobic008G132200 Sobic001G347700 Sobic001G347700 Sobic001G348000--Sobic001G347700 Sobic005G210500 Sobic005G210500 Sobic001G348000--Sobic005G210500 Sobic002G232400 Sobic002G232400 Sobic001G348000--Sobic002G232400 Sobic006G271000 Sobic006G271000 Sobic001G348000--Sobic006G271000 Sobic001G286100 Sobic001G286100 Sobic001G348000--Sobic001G286100 Sobic002G268700--Sobic002G232400 Sobic002G268700--Sobic001G348000 Sobic004G231200 Sobic004G231200 Sobic002G268700--Sobic004G231200 Sobic004G069400 Sobic004G069400 Sobic002G268700--Sobic004G069400 Sobic002G268700--Sobic007G048700 Sobic010G080900 Sobic010G080900 Sobic002G268700--Sobic010G080900 Sobic002G070300 Sobic002G070300 Sobic002G268700--Sobic002G070300 Sobic004G064600 Sobic004G064600 Sobic002G268700--Sobic004G064600 Sobic002G426100 Sobic002G426100 Sobic002G268700--Sobic002G426100 Sobic001G219800 Sobic001G219800 Sobic001G192700--Sobic001G219800 Sobic003G016300 Sobic003G016300 Sobic001G192700--Sobic003G016300 Sobic001G352800 Sobic001G352800 Sobic001G192700--Sobic001G352800 Sobic001G192700--Sobic002G232400 Sobic001G135200 Sobic001G135200 Sobic001G192700--Sobic001G135200 Sobic001G192700--Sobic001G348000 Sobic004G117400 Sobic004G117400 Sobic001G192700--Sobic004G117400 Sobic001G091701 Sobic001G091701 Sobic001G192700--Sobic001G091701 Sobic002G387800 Sobic002G387800 Sobic001G192700--Sobic002G387800 Sobic003G167000 Sobic003G167000 Sobic007G048700--Sobic003G167000 Sobic007G048700--Sobic002G070300 Sobic001G035400 Sobic001G035400 Sobic007G048700--Sobic001G035400 Sobic009G220000 Sobic009G220000 Sobic007G048700--Sobic009G220000 Sobic007G003100 Sobic007G003100 Sobic007G048700--Sobic007G003100 Sobic007G048700--Sobic001G347700 Sobic007G048700--Sobic008G132200 Sobic001G343000 Sobic001G343000 Sobic007G048700--Sobic001G343000 Sobic001G013200 Sobic001G013200 Sobic007G048700--Sobic001G013200 Sobic008G132200--Sobic002G070300 Sobic003G260600 Sobic003G260600 Sobic008G132200--Sobic003G260600 Sobic002G255400 Sobic002G255400 Sobic008G132200--Sobic002G255400 Sobic003G372200 Sobic003G372200 Sobic008G132200--Sobic003G372200 Sobic001G385000 Sobic001G385000 Sobic008G132200--Sobic001G385000 Sobic002G167100 Sobic002G167100 Sobic008G132200--Sobic002G167100 Sobic001G378800 Sobic001G378800 Sobic008G132200--Sobic001G378800 Sobic006G232800 Sobic006G232800 Sobic008G132200--Sobic006G232800 Sobic010G253200 Sobic010G253200 Sobic008G132200--Sobic010G253200 Sobic001G347700--Sobic007G048700 Sobic001G347700--Sobic003G167000 Sobic001G347700--Sobic001G352800 Sobic001G485300 Sobic001G485300 Sobic001G347700--Sobic001G485300 Sobic001G347700--Sobic003G260600 Sobic010G028400 Sobic010G028400 Sobic001G347700--Sobic010G028400 Sobic002G352200 Sobic002G352200 Sobic001G347700--Sobic002G352200 Sobic002G217500 Sobic002G217500 Sobic001G347700--Sobic002G217500 Sobic004G040700 Sobic004G040700 Sobic001G347700--Sobic004G040700 Sobic003G418400 Sobic003G418400 Sobic005G210500--Sobic003G418400 Sobic001G486600 Sobic001G486600 Sobic005G210500--Sobic001G486600 Sobic009G214500 Sobic009G214500 Sobic005G210500--Sobic009G214500 Sobic010G038200 Sobic010G038200 Sobic005G210500--Sobic010G038200 Sobic001G117900 Sobic001G117900 Sobic005G210500--Sobic001G117900 Sobic003G005500 Sobic003G005500 Sobic005G210500--Sobic003G005500 Sobic010G252200 Sobic010G252200 Sobic005G210500--Sobic010G252200 Sobic007G102300 Sobic007G102300 Sobic005G210500--Sobic007G102300 Sobic010G030000 Sobic010G030000 Sobic005G210500--Sobic010G030000 Sobic002G153000 Sobic002G153000 Sobic002G232400--Sobic002G153000 Sobic002G090500 Sobic002G090500 Sobic002G232400--Sobic002G090500 Sobic002G232400--Sobic001G352800 Sobic002G232400--Sobic001G192700 Sobic002G232400--Sobic002G268700 Sobic010G002800 Sobic010G002800 Sobic002G232400--Sobic010G002800 Sobic004G218600 Sobic004G218600 Sobic002G232400--Sobic004G218600 Sobic008G084100 Sobic008G084100 Sobic002G232400--Sobic008G084100 Sobic010G018500 Sobic010G018500 Sobic002G232400--Sobic010G018500 Sobic006G271000--Sobic001G352800 Sobic002G153400 Sobic002G153400 Sobic006G271000--Sobic002G153400 Sobic006G271000--Sobic009G220000 Sobic006G271000--Sobic001G135200 Sobic006G271000--Sobic001G192700 Sobic006G271000--Sobic001G286100 Sobic006G271000--Sobic010G002800 Sobic006G271000--Sobic001G348000 Sobic006G271000--Sobic005G210500 Sobic001G286100--Sobic004G069400 Sobic008G118300 Sobic008G118300 Sobic001G286100--Sobic008G118300 Sobic001G286100--Sobic003G418400 Sobic007G201000 Sobic007G201000 Sobic001G286100--Sobic007G201000 Sobic010G250000 Sobic010G250000 Sobic001G286100--Sobic010G250000 Sobic001G286100--Sobic001G135200 Sobic001G286100--Sobic006G271000 Sobic009G063800 Sobic009G063800 Sobic001G286100--Sobic009G063800 Sobic001G309200 Sobic001G309200 Sobic001G286100--Sobic001G309200
Octagon: transcription factors


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