Gene annotation
Transcriptome id Sobic.004G069400.2,Sobic.004G069400.8,Sobic.004G069400.3,Sobic.004G069400.4,Sobic.004G069400.5,Sobic.004G069400.9,Sobic.004G069400.6,Sobic.004G069400.7
Synonym Sb04g005820
Functional annotation mTERF family protein, expressed
UniProt C5XWZ1
Pfam PF02536
Panther DB PTHR13068 PTHR13068:SF33
NCBI CDD -
KEGG Orthology K15032; mTERF domain-containing protein, mitochondrial
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005739mitochondrion GO:0003690double-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT1G21150 : Mitochondrial transcription termination factor family protein
RAP-DB (Rice) LOC_Os06g12060.1 : mTERF family protein, expressed
MaizeGDB (Corn) Zm00025a019332
Brachypodium -
Barley HORVU5Hr1G069340.1 , HORVU5Hr1G069340.2 , HORVU6Hr1G003560.2 , HORVU6Hr1G003560.3 , HORVU6Hr1G003560.1 , HORVU6Hr1G002980.17 , HORVU6Hr1G002980.16 , HORVU6Hr1G002980.15 , HORVU6Hr1G002980.14 , HORVU6Hr1G002980.13 , HORVU6Hr1G002980.12 , HORVU6Hr1G002980.11 , HORVU6Hr1G002980.10 , HORVU6Hr1G002980.18 , HORVU7Hr1G037550.1 , HORVU7Hr1G037550.3 , HORVU7Hr1G037550.2 , HORVU7Hr1G037550.5 , HORVU7Hr1G037550.4 , HORVU7Hr1G037550.6 , HORVU6Hr1G002980.9 , HORVU6Hr1G002980.8 , HORVU6Hr1G002980.7 , HORVU6Hr1G002980.6 , HORVU6Hr1G002980.5 , HORVU6Hr1G002980.4 , HORVU6Hr1G002980.3 , HORVU6Hr1G002980.2 , HORVU6Hr1G002980.1
Wheat TraesCS2D02G488800 , TraesCS6A02G066800 , TraesCSU02G085400 , TraesCS1A02G440100 , TraesCS6B02G048900 , TraesCS2D02G488800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G286100 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
2 Sobic.001G140700 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
3 Sobic.002G268700 hydroxymethylglutaryl-CoA synthase, putative, expressed K01641: hydroxymethylglutaryl-CoA synthase
4 Sobic.001G413100 nucleotide binding protein, putative, expressed -
5 Sobic.002G232400 clathrin adaptor complex small chain domain containing protein, expressed -
6 Sobic.002G304400 expressed protein -
7 Sobic.009G220000 threonine synthase, chloroplast precursor, putative, expressed K01733: threonine synthase
8 Sobic.006G119300 ribonuclease H2 subunit B, putative, expressed K10744: ribonuclease H2 subunit B
9 Sobic.009G244900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cycloartenol-C-24-methyltransferase 1, putative, expressed K00559: SMT1, sterol 24-C-methyltransferase
10 Sobic.007G112100 enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed K00208: enoyl-[acyl-carrier protein] reductase I
11 Sobic.006G271000 mis12 protein, expressed -
12 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
13 Sobic.001G348000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nodulation protein-related, putative, expressed -
14 Sobic.001G518600 fatty acid hydroxylase, putative, expressed K14424: plant 4alpha-monomethylsterol monooxygenase
15 Sobic.008G084100 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
16 Sobic.007G140100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
17 Sobic.001G486600 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
18 Sobic.001G135200 OB-fold nucleic acid binding domain containing protein, putative, expressed K15365: RecQ-mediated genome instability protein 2
19 Sobic.004G356300 expressed protein -
20 Sobic.003G075200 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial


Gene co-expression network
sample Sobic004G069400 Sobic004G069400 Sobic001G286100 Sobic001G286100 Sobic004G069400--Sobic001G286100 Sobic001G140700 Sobic001G140700 Sobic004G069400--Sobic001G140700 Sobic002G268700 Sobic002G268700 Sobic004G069400--Sobic002G268700 Sobic001G413100 Sobic001G413100 Sobic004G069400--Sobic001G413100 Sobic002G232400 Sobic002G232400 Sobic004G069400--Sobic002G232400 Sobic002G304400 Sobic002G304400 Sobic004G069400--Sobic002G304400 Sobic009G220000 Sobic009G220000 Sobic004G069400--Sobic009G220000 Sobic006G119300 Sobic006G119300 Sobic004G069400--Sobic006G119300 Sobic009G244900 Sobic009G244900 Sobic004G069400--Sobic009G244900 Sobic001G286100--Sobic004G069400 Sobic008G118300 Sobic008G118300 Sobic001G286100--Sobic008G118300 Sobic003G418400 Sobic003G418400 Sobic001G286100--Sobic003G418400 Sobic007G201000 Sobic007G201000 Sobic001G286100--Sobic007G201000 Sobic010G250000 Sobic010G250000 Sobic001G286100--Sobic010G250000 Sobic001G135200 Sobic001G135200 Sobic001G286100--Sobic001G135200 Sobic006G271000 Sobic006G271000 Sobic001G286100--Sobic006G271000 Sobic009G063800 Sobic009G063800 Sobic001G286100--Sobic009G063800 Sobic001G309200 Sobic001G309200 Sobic001G286100--Sobic001G309200 Sobic007G125300 Sobic007G125300 Sobic001G140700--Sobic007G125300 Sobic001G140700--Sobic004G069400 Sobic006G094100 Sobic006G094100 Sobic001G140700--Sobic006G094100 Sobic002G236700 Sobic002G236700 Sobic001G140700--Sobic002G236700 Sobic003G212600 Sobic003G212600 Sobic001G140700--Sobic003G212600 Sobic001G268300 Sobic001G268300 Sobic001G140700--Sobic001G268300 Sobic006G120600 Sobic006G120600 Sobic001G140700--Sobic006G120600 Sobic009G087300 Sobic009G087300 Sobic001G140700--Sobic009G087300 Sobic010G250400 Sobic010G250400 Sobic001G140700--Sobic010G250400 Sobic002G268700--Sobic002G232400 Sobic001G348000 Sobic001G348000 Sobic002G268700--Sobic001G348000 Sobic004G231200 Sobic004G231200 Sobic002G268700--Sobic004G231200 Sobic002G268700--Sobic004G069400 Sobic007G048700 Sobic007G048700 Sobic002G268700--Sobic007G048700 Sobic010G080900 Sobic010G080900 Sobic002G268700--Sobic010G080900 Sobic002G070300 Sobic002G070300 Sobic002G268700--Sobic002G070300 Sobic004G064600 Sobic004G064600 Sobic002G268700--Sobic004G064600 Sobic002G426100 Sobic002G426100 Sobic002G268700--Sobic002G426100 Sobic010G134100 Sobic010G134100 Sobic001G413100--Sobic010G134100 Sobic001G167500 Sobic001G167500 Sobic001G413100--Sobic001G167500 Sobic009G041800 Sobic009G041800 Sobic001G413100--Sobic009G041800 Sobic008G084100 Sobic008G084100 Sobic001G413100--Sobic008G084100 Sobic001G413100--Sobic004G069400 Sobic001G176900 Sobic001G176900 Sobic001G413100--Sobic001G176900 Sobic001G413100--Sobic002G304400 Sobic003G388900 Sobic003G388900 Sobic001G413100--Sobic003G388900 Sobic003G388700 Sobic003G388700 Sobic001G413100--Sobic003G388700 Sobic002G153000 Sobic002G153000 Sobic002G232400--Sobic002G153000 Sobic002G090500 Sobic002G090500 Sobic002G232400--Sobic002G090500 Sobic001G352800 Sobic001G352800 Sobic002G232400--Sobic001G352800 Sobic001G192700 Sobic001G192700 Sobic002G232400--Sobic001G192700 Sobic002G232400--Sobic002G268700 Sobic010G002800 Sobic010G002800 Sobic002G232400--Sobic010G002800 Sobic004G218600 Sobic004G218600 Sobic002G232400--Sobic004G218600 Sobic002G232400--Sobic008G084100 Sobic010G018500 Sobic010G018500 Sobic002G232400--Sobic010G018500 Sobic002G304400--Sobic001G413100 Sobic002G304400--Sobic008G118300 Sobic002G304400--Sobic004G069400 Sobic007G112100 Sobic007G112100 Sobic002G304400--Sobic007G112100 Sobic002G304400--Sobic001G286100 Sobic002G304400--Sobic001G167500 Sobic001G336050 Sobic001G336050 Sobic002G304400--Sobic001G336050 Sobic001G521100 Sobic001G521100 Sobic002G304400--Sobic001G521100 Sobic001G081900 Sobic001G081900 Sobic002G304400--Sobic001G081900 Sobic009G220000--Sobic007G048700 Sobic003G075200 Sobic003G075200 Sobic009G220000--Sobic003G075200 Sobic009G220000--Sobic004G069400 Sobic009G220000--Sobic006G271000 Sobic003G261100 Sobic003G261100 Sobic009G220000--Sobic003G261100 Sobic004G356300 Sobic004G356300 Sobic009G220000--Sobic004G356300 Sobic002G352200 Sobic002G352200 Sobic009G220000--Sobic002G352200 Sobic004G007700 Sobic004G007700 Sobic009G220000--Sobic004G007700 Sobic009G220000--Sobic001G135200 Sobic002G113400 Sobic002G113400 Sobic006G119300--Sobic002G113400 Sobic001G486600 Sobic001G486600 Sobic006G119300--Sobic001G486600 Sobic002G297500 Sobic002G297500 Sobic006G119300--Sobic002G297500 Sobic006G119300--Sobic007G125300 Sobic010G252200 Sobic010G252200 Sobic006G119300--Sobic010G252200 Sobic006G119300--Sobic001G521100 Sobic004G032900 Sobic004G032900 Sobic006G119300--Sobic004G032900 Sobic005G210500 Sobic005G210500 Sobic006G119300--Sobic005G210500 Sobic004G053900 Sobic004G053900 Sobic006G119300--Sobic004G053900 Sobic007G192500 Sobic007G192500 Sobic009G244900--Sobic007G192500 Sobic002G201700 Sobic002G201700 Sobic009G244900--Sobic002G201700 Sobic004G261800 Sobic004G261800 Sobic009G244900--Sobic004G261800 Sobic010G101600 Sobic010G101600 Sobic009G244900--Sobic010G101600 Sobic002G167100 Sobic002G167100 Sobic009G244900--Sobic002G167100 Sobic009G244900--Sobic002G153000 Sobic009G244900--Sobic001G135200 Sobic010G250300 Sobic010G250300 Sobic009G244900--Sobic010G250300 Sobic009G244900--Sobic004G069400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.