Gene annotation
Transcriptome id Sobic.001G486600.1
Synonym RFC4, Sb01g045530, EMB1968
Functional annotation RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed
UniProt C5WVW1
Pfam PF00004 PF08542
Panther DB PTHR11669 PTHR11669:SF17
NCBI CDD KOG0989; Replication factor C, subunit RFC4
KEGG Orthology K10755; replication factor C subunit 2/4
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT1G21690 : ATPase family associated with various cellular activities (AAA)
RAP-DB (Rice) LOC_Os12g07720.1 : RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed
MaizeGDB (Corn) Zm00025a054061
Brachypodium KQJ92020 , PNT65360
Barley HORVU5Hr1G037020.15 , HORVU5Hr1G037020.14 , HORVU5Hr1G037020.13 , HORVU5Hr1G037020.12 , HORVU5Hr1G037020.11 , HORVU5Hr1G037020.10 , HORVU5Hr1G037020.7 , HORVU5Hr1G037020.4 , HORVU5Hr1G037020.3 , HORVU5Hr1G037020.1 , HORVU5Hr1G037020.6 , HORVU5Hr1G037020.5 , HORVU5Hr1G037020.2 , HORVU5Hr1G037020.9 , HORVU5Hr1G037020.8
Wheat TraesCS5B02G119700 , TraesCS5A02G113700 , TraesCS5D02G128600 , TraesCS5D02G128600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G210500 - K10901: BLM, RECQL3, bloom syndrome protein
2 Sobic.008G131900 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@resistance protein LR10, putative, expressed -
3 Sobic.010G038200 CDT1A - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
4 Sobic.002G173400 expressed protein -
5 Sobic.006G119300 ribonuclease H2 subunit B, putative, expressed K10744: ribonuclease H2 subunit B
6 Sobic.008G047500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.010G030000 leucine rich repeat protein, putative, expressed -
8 Sobic.010G252200 PPR repeat domain containing protein, putative, expressed -
9 Sobic.003G204100 expressed protein -
10 Sobic.001G529500 PPR repeat domain containing protein, putative, expressed -
11 Sobic.006G126800 expressed protein K10730: ATP-dependent DNA helicase Q4
12 Sobic.001G117900 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
13 Sobic.006G106600 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
14 Sobic.010G009700 OsFBX182 - F-box domain containing protein, expressed -
15 Sobic.006G127200 kelch repeat protein, putative, expressed -
16 Sobic.003G418400 expressed protein -
17 Sobic.008G004900 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
18 Sobic.010G222800 expressed protein -
19 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
20 Sobic.002G095300 deoxynucleoside kinase family, putative, expressed K00893: deoxycitidine kinase


Gene co-expression network
sample Sobic001G486600 Sobic001G486600 Sobic005G210500 Sobic005G210500 Sobic001G486600--Sobic005G210500 Sobic008G131900 Sobic008G131900 Sobic001G486600--Sobic008G131900 Sobic010G038200 Sobic010G038200 Sobic001G486600--Sobic010G038200 Sobic002G173400 Sobic002G173400 Sobic001G486600--Sobic002G173400 Sobic006G119300 Sobic006G119300 Sobic001G486600--Sobic006G119300 Sobic008G047500 Sobic008G047500 Sobic001G486600--Sobic008G047500 Sobic010G030000 Sobic010G030000 Sobic001G486600--Sobic010G030000 Sobic010G252200 Sobic010G252200 Sobic001G486600--Sobic010G252200 Sobic003G204100 Sobic003G204100 Sobic001G486600--Sobic003G204100 Sobic003G418400 Sobic003G418400 Sobic005G210500--Sobic003G418400 Sobic005G210500--Sobic001G486600 Sobic009G214500 Sobic009G214500 Sobic005G210500--Sobic009G214500 Sobic005G210500--Sobic010G038200 Sobic001G117900 Sobic001G117900 Sobic005G210500--Sobic001G117900 Sobic003G005500 Sobic003G005500 Sobic005G210500--Sobic003G005500 Sobic005G210500--Sobic010G252200 Sobic007G102300 Sobic007G102300 Sobic005G210500--Sobic007G102300 Sobic005G210500--Sobic010G030000 Sobic008G131900--Sobic002G173400 Sobic008G131900--Sobic010G038200 Sobic009G136000 Sobic009G136000 Sobic008G131900--Sobic009G136000 Sobic010G024000 Sobic010G024000 Sobic008G131900--Sobic010G024000 Sobic008G131900--Sobic010G030000 Sobic008G131900--Sobic001G486600 Sobic002G052800 Sobic002G052800 Sobic008G131900--Sobic002G052800 Sobic010G222800 Sobic010G222800 Sobic008G131900--Sobic010G222800 Sobic006G193100 Sobic006G193100 Sobic008G131900--Sobic006G193100 Sobic010G038200--Sobic009G136000 Sobic010G038200--Sobic010G030000 Sobic010G009700 Sobic010G009700 Sobic010G038200--Sobic010G009700 Sobic010G038200--Sobic008G131900 Sobic001G248400 Sobic001G248400 Sobic010G038200--Sobic001G248400 Sobic005G060100 Sobic005G060100 Sobic010G038200--Sobic005G060100 Sobic010G038200--Sobic009G214500 Sobic003G216600 Sobic003G216600 Sobic010G038200--Sobic003G216600 Sobic010G038200--Sobic002G052800 Sobic002G173400--Sobic008G131900 Sobic009G120400 Sobic009G120400 Sobic002G173400--Sobic009G120400 Sobic003G194800 Sobic003G194800 Sobic002G173400--Sobic003G194800 Sobic002G173400--Sobic008G047500 Sobic002G173400--Sobic002G052800 Sobic002G173400--Sobic010G038200 Sobic010G143600 Sobic010G143600 Sobic002G173400--Sobic010G143600 Sobic004G000400 Sobic004G000400 Sobic002G173400--Sobic004G000400 Sobic002G173400--Sobic005G060100 Sobic002G113400 Sobic002G113400 Sobic006G119300--Sobic002G113400 Sobic006G119300--Sobic001G486600 Sobic002G297500 Sobic002G297500 Sobic006G119300--Sobic002G297500 Sobic007G125300 Sobic007G125300 Sobic006G119300--Sobic007G125300 Sobic006G119300--Sobic010G252200 Sobic001G521100 Sobic001G521100 Sobic006G119300--Sobic001G521100 Sobic004G032900 Sobic004G032900 Sobic006G119300--Sobic004G032900 Sobic006G119300--Sobic005G210500 Sobic004G053900 Sobic004G053900 Sobic006G119300--Sobic004G053900 Sobic008G085950 Sobic008G085950 Sobic008G047500--Sobic008G085950 Sobic008G047500--Sobic003G204100 Sobic008G047500--Sobic003G194800 Sobic007G102000 Sobic007G102000 Sobic008G047500--Sobic007G102000 Sobic002G390800 Sobic002G390800 Sobic008G047500--Sobic002G390800 Sobic008G047500--Sobic002G173400 Sobic004G298600 Sobic004G298600 Sobic008G047500--Sobic004G298600 Sobic007G105700 Sobic007G105700 Sobic008G047500--Sobic007G105700 Sobic008G047500--Sobic010G009700 Sobic010G030000--Sobic010G038200 Sobic010G030000--Sobic009G136000 Sobic010G030000--Sobic008G131900 Sobic010G030000--Sobic010G009700 Sobic010G243100 Sobic010G243100 Sobic010G030000--Sobic010G243100 Sobic010G030000--Sobic005G210500 Sobic010G030000--Sobic003G216600 Sobic010G030000--Sobic001G486600 Sobic010G030000--Sobic010G222800 Sobic006G126800 Sobic006G126800 Sobic010G252200--Sobic006G126800 Sobic010G252200--Sobic005G210500 Sobic009G081800 Sobic009G081800 Sobic010G252200--Sobic009G081800 Sobic010G252200--Sobic001G486600 Sobic003G184666 Sobic003G184666 Sobic010G252200--Sobic003G184666 Sobic010G252200--Sobic006G119300 Sobic001G268300 Sobic001G268300 Sobic010G252200--Sobic001G268300 Sobic002G362200 Sobic002G362200 Sobic010G252200--Sobic002G362200 Sobic003G045450 Sobic003G045450 Sobic010G252200--Sobic003G045450 Sobic003G204100--Sobic008G047500 Sobic003G204100--Sobic003G194800 Sobic003G204100--Sobic003G045450 Sobic003G204100--Sobic004G298600 Sobic003G204100--Sobic008G085950 Sobic003G204100--Sobic002G173400 Sobic003G204100--Sobic010G143600 Sobic003G204100--Sobic001G117900 Sobic003G204100--Sobic007G102000
Octagon: transcription factors


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