Gene annotation
Transcriptome id Sobic.006G126800.1
Synonym
Functional annotation expressed protein
UniProt C5YAB4
Pfam PF00270 PF00271
Panther DB PTHR13710 PTHR13710:SF76
NCBI CDD KOG0351; ATP-dependent DNA helicase
KEGG Orthology K10730; ATP-dependent DNA helicase Q4
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G27880 : DEAD/DEAH box RNA helicase family protein
RAP-DB (Rice) LOC_Os04g40970.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a056335
Brachypodium KQJ83245 , KQJ83246 , PNT61332
Barley HORVU2Hr1G084110.10 , HORVU2Hr1G084110.11 , HORVU2Hr1G084110.12 , HORVU2Hr1G084110.13 , HORVU2Hr1G084110.15 , HORVU2Hr1G084110.18 , HORVU2Hr1G084110.19 , HORVU2Hr1G084110.14 , HORVU2Hr1G084110.16 , HORVU2Hr1G084110.17 , HORVU2Hr1G084110.8 , HORVU2Hr1G084110.9 , HORVU2Hr1G084110.2 , HORVU2Hr1G084110.3 , HORVU2Hr1G084110.1 , HORVU2Hr1G084110.6 , HORVU2Hr1G084110.7 , HORVU2Hr1G084110.4 , HORVU2Hr1G084110.5 , HORVU2Hr1G084110.25 , HORVU2Hr1G084110.24 , HORVU2Hr1G084110.27 , HORVU2Hr1G084110.26 , HORVU2Hr1G084110.21 , HORVU2Hr1G084110.20 , HORVU2Hr1G084110.23 , HORVU2Hr1G084110.22
Wheat TraesCS2B02G363700 , TraesCS2A02G345300 , TraesCS2D02G344000 , TraesCS2D02G344000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G081800 helicase, putative, expressed K11273: DDX11, CHL1, chromosome transmission fidelity protein 1
2 Sobic.010G252200 PPR repeat domain containing protein, putative, expressed -
3 Sobic.010G269800 Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed K06640: serine/threonine-protein kinase ATR
4 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
5 Sobic.006G127200 kelch repeat protein, putative, expressed -
6 Sobic.002G173400 expressed protein -
7 Sobic.002G095300 deoxynucleoside kinase family, putative, expressed K00893: deoxycitidine kinase
8 Sobic.002G286632 - -
9 Sobic.005G210500 - K10901: BLM, RECQL3, bloom syndrome protein
10 Sobic.001G486600 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
11 Sobic.004G000400 OsPDIL1-4 protein disulfide isomerase PDIL1-4, expressed K09580: PDIA1, protein disulfide-isomerase A1
12 Sobic.003G315700 AAA-type ATPase family protein, putative, expressed -
13 Sobic.004G306100 expressed protein -
14 Sobic.005G068800 TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed K10728: topoisomerase (DNA) II binding protein 1
15 Sobic.007G125300 BRCA1 C Terminus domain containing protein, expressed -
16 Sobic.001G239900 amino acid permease, putative, expressed -
17 Sobic.010G087100 MCM9 - Putative minichromosome maintenance MCM family subunit 9, expressed K10738: DNA helicase MCM9
18 Sobic.006G119300 ribonuclease H2 subunit B, putative, expressed K10744: ribonuclease H2 subunit B
19 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
20 Sobic.003G184666 - -


Gene co-expression network
sample Sobic006G126800 Sobic006G126800 Sobic009G081800 Sobic009G081800 Sobic006G126800--Sobic009G081800 Sobic010G252200 Sobic010G252200 Sobic006G126800--Sobic010G252200 Sobic010G269800 Sobic010G269800 Sobic006G126800--Sobic010G269800 Sobic002G426100 Sobic002G426100 Sobic006G126800--Sobic002G426100 Sobic006G127200 Sobic006G127200 Sobic006G126800--Sobic006G127200 Sobic002G173400 Sobic002G173400 Sobic006G126800--Sobic002G173400 Sobic002G095300 Sobic002G095300 Sobic006G126800--Sobic002G095300 Sobic002G286632 Sobic002G286632 Sobic006G126800--Sobic002G286632 Sobic005G210500 Sobic005G210500 Sobic006G126800--Sobic005G210500 Sobic009G081800--Sobic006G126800 Sobic009G081800--Sobic010G252200 Sobic003G041400 Sobic003G041400 Sobic009G081800--Sobic003G041400 Sobic009G081800--Sobic006G127200 Sobic001G530100 Sobic001G530100 Sobic009G081800--Sobic001G530100 Sobic001G239900 Sobic001G239900 Sobic009G081800--Sobic001G239900 Sobic009G081800--Sobic010G269800 Sobic009G081800--Sobic005G210500 Sobic006G119300 Sobic006G119300 Sobic009G081800--Sobic006G119300 Sobic010G252200--Sobic006G126800 Sobic010G252200--Sobic005G210500 Sobic010G252200--Sobic009G081800 Sobic001G486600 Sobic001G486600 Sobic010G252200--Sobic001G486600 Sobic003G184666 Sobic003G184666 Sobic010G252200--Sobic003G184666 Sobic010G252200--Sobic006G119300 Sobic001G268300 Sobic001G268300 Sobic010G252200--Sobic001G268300 Sobic002G362200 Sobic002G362200 Sobic010G252200--Sobic002G362200 Sobic003G045450 Sobic003G045450 Sobic010G252200--Sobic003G045450 Sobic002G308000 Sobic002G308000 Sobic010G269800--Sobic002G308000 Sobic007G102000 Sobic007G102000 Sobic010G269800--Sobic007G102000 Sobic009G080600 Sobic009G080600 Sobic010G269800--Sobic009G080600 Sobic010G253200 Sobic010G253200 Sobic010G269800--Sobic010G253200 Sobic002G390800 Sobic002G390800 Sobic010G269800--Sobic002G390800 Sobic008G004900 Sobic008G004900 Sobic010G269800--Sobic008G004900 Sobic002G192900 Sobic002G192900 Sobic010G269800--Sobic002G192900 Sobic010G018900 Sobic010G018900 Sobic010G269800--Sobic010G018900 Sobic009G042000 Sobic009G042000 Sobic010G269800--Sobic009G042000 Sobic009G120400 Sobic009G120400 Sobic002G426100--Sobic009G120400 Sobic008G111600 Sobic008G111600 Sobic002G426100--Sobic008G111600 Sobic006G181800 Sobic006G181800 Sobic002G426100--Sobic006G181800 Sobic002G078100 Sobic002G078100 Sobic002G426100--Sobic002G078100 Sobic002G043000 Sobic002G043000 Sobic002G426100--Sobic002G043000 Sobic006G017800 Sobic006G017800 Sobic002G426100--Sobic006G017800 Sobic002G066800 Sobic002G066800 Sobic002G426100--Sobic002G066800 Sobic007G186400 Sobic007G186400 Sobic002G426100--Sobic007G186400 Sobic004G129500 Sobic004G129500 Sobic002G426100--Sobic004G129500 Sobic004G306100 Sobic004G306100 Sobic006G127200--Sobic004G306100 Sobic002G271400 Sobic002G271400 Sobic006G127200--Sobic002G271400 Sobic010G257500 Sobic010G257500 Sobic006G127200--Sobic010G257500 Sobic002G123600 Sobic002G123600 Sobic006G127200--Sobic002G123600 Sobic003G409600 Sobic003G409600 Sobic006G127200--Sobic003G409600 Sobic003G226700 Sobic003G226700 Sobic006G127200--Sobic003G226700 Sobic006G127200--Sobic009G081800 Sobic010G103500 Sobic010G103500 Sobic006G127200--Sobic010G103500 Sobic001G025900 Sobic001G025900 Sobic006G127200--Sobic001G025900 Sobic008G131900 Sobic008G131900 Sobic002G173400--Sobic008G131900 Sobic002G173400--Sobic009G120400 Sobic003G194800 Sobic003G194800 Sobic002G173400--Sobic003G194800 Sobic008G047500 Sobic008G047500 Sobic002G173400--Sobic008G047500 Sobic002G052800 Sobic002G052800 Sobic002G173400--Sobic002G052800 Sobic010G038200 Sobic010G038200 Sobic002G173400--Sobic010G038200 Sobic010G143600 Sobic010G143600 Sobic002G173400--Sobic010G143600 Sobic004G000400 Sobic004G000400 Sobic002G173400--Sobic004G000400 Sobic005G060100 Sobic005G060100 Sobic002G173400--Sobic005G060100 Sobic002G187600 Sobic002G187600 Sobic002G095300--Sobic002G187600 Sobic010G087100 Sobic010G087100 Sobic002G095300--Sobic010G087100 Sobic002G021200 Sobic002G021200 Sobic002G095300--Sobic002G021200 Sobic002G095300--Sobic002G123600 Sobic007G187700 Sobic007G187700 Sobic002G095300--Sobic007G187700 Sobic008G118100 Sobic008G118100 Sobic002G095300--Sobic008G118100 Sobic008G090400 Sobic008G090400 Sobic002G095300--Sobic008G090400 Sobic002G168000 Sobic002G168000 Sobic002G095300--Sobic002G168000 Sobic002G095300--Sobic006G126800 Sobic009G168200 Sobic009G168200 Sobic002G286632--Sobic009G168200 Sobic006G081700 Sobic006G081700 Sobic002G286632--Sobic006G081700 Sobic009G163400 Sobic009G163400 Sobic002G286632--Sobic009G163400 Sobic005G034200 Sobic005G034200 Sobic002G286632--Sobic005G034200 Sobic008G141900 Sobic008G141900 Sobic002G286632--Sobic008G141900 Sobic003G005500 Sobic003G005500 Sobic002G286632--Sobic003G005500 Sobic001G010500 Sobic001G010500 Sobic002G286632--Sobic001G010500 Sobic002G286632--Sobic002G173400 Sobic008G180200 Sobic008G180200 Sobic002G286632--Sobic008G180200 Sobic003G418400 Sobic003G418400 Sobic005G210500--Sobic003G418400 Sobic005G210500--Sobic001G486600 Sobic009G214500 Sobic009G214500 Sobic005G210500--Sobic009G214500 Sobic005G210500--Sobic010G038200 Sobic001G117900 Sobic001G117900 Sobic005G210500--Sobic001G117900 Sobic005G210500--Sobic003G005500 Sobic005G210500--Sobic010G252200 Sobic007G102300 Sobic007G102300 Sobic005G210500--Sobic007G102300 Sobic010G030000 Sobic010G030000 Sobic005G210500--Sobic010G030000
Octagon: transcription factors


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