Gene annotation
Transcriptome id Sobic.002G362200.1
Synonym ATMSH2, Sb02g038230, MSH2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
MSH-like DNA mismatch repair protein, putative, expressed
UniProt C5XD67
Pfam PF00488 PF05192 PF05188 PF01624 PF05190
Panther DB PTHR11361:SF35 PTHR11361
NCBI CDD -
KEGG Orthology K08735; DNA mismatch repair protein MSH2
Gene Ontology GO:0005524; ATP binding GO:0006298mismatch repair


Orthologs (automatic annotation)
TAIR AT3G18524 : MUTS homolog 2
RAP-DB (Rice) LOC_Os05g19270.1 : MSH-like DNA mismatch repair protein, putative, expressed
MaizeGDB (Corn) Zm00025a048633
Brachypodium KQK14295 , PNT74475
Barley HORVU1Hr1G030930.32 , HORVU1Hr1G030930.30 , HORVU1Hr1G030930.31 , HORVU1Hr1G030930.33 , HORVU1Hr1G030930.34 , HORVU1Hr1G030930.35 , HORVU1Hr1G030930.36 , HORVU1Hr1G030930.37 , HORVU1Hr1G030930.38 , HORVU1Hr1G030930.39 , HORVU1Hr1G030930.15 , HORVU1Hr1G030930.2 , HORVU1Hr1G030930.3 , HORVU1Hr1G030930.4 , HORVU1Hr1G030930.5 , HORVU1Hr1G030930.6 , HORVU1Hr1G030930.8 , HORVU1Hr1G030930.9 , HORVU1Hr1G030930.18 , HORVU1Hr1G030930.19 , HORVU1Hr1G030930.12 , HORVU1Hr1G030930.13 , HORVU1Hr1G030930.10 , HORVU1Hr1G030930.11 , HORVU1Hr1G030930.16 , HORVU1Hr1G030930.17 , HORVU1Hr1G030930.14 , HORVU1Hr1G030930.1 , HORVU1Hr1G030930.7 , HORVU1Hr1G030930.23 , HORVU1Hr1G030930.22 , HORVU1Hr1G030930.21 , HORVU1Hr1G030930.20 , HORVU1Hr1G030930.27 , HORVU1Hr1G030930.26 , HORVU1Hr1G030930.25 , HORVU1Hr1G030930.24 , HORVU1Hr1G030930.29 , HORVU1Hr1G030930.28
Wheat TraesCS1B02G149700 , TraesCS1B02G149700 , TraesCS1B02G149700 , TraesCS1A02G135100 , TraesCS1A02G135100 , TraesCS1A02G135100 , TraesCS1A02G135100 , TraesCS1D02G131600 , TraesCS1D02G131600 , TraesCS1D02G131600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G111600 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
2 Sobic.010G252700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cullin family domain containing protein, putative, expressed K03349: anaphase-promoting complex subunit 2
3 Sobic.008G090000 oxysterol-binding protein, putative, expressed -
4 Sobic.008G179000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
6 Sobic.001G537400 MYB family transcription factor, putative, expressed -
7 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
8 Sobic.008G031200 pentatricopeptide, putative, expressed -
9 Sobic.003G147500 PHS1, putative, expressed K14165: atypical dual specificity phosphatase
10 Sobic.009G052100 tubulin/FtsZ domain containing protein, putative, expressed K10389: tubulin gamma
11 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
12 Sobic.005G088900 AGAP007117-PA, putative, expressed -
13 Sobic.003G173400 tetratricopeptide repeat protein 5, putative, expressed -
14 Sobic.005G078700 OsFBX411 - F-box domain containing protein, expressed -
15 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
16 Sobic.010G252200 PPR repeat domain containing protein, putative, expressed -
17 Sobic.002G168000 expressed protein -
18 Sobic.001G140700 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
19 Sobic.002G043000 HEN1, putative, expressed -
20 Sobic.003G144000 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic002G362200 Sobic002G362200 Sobic008G111600 Sobic008G111600 Sobic002G362200--Sobic008G111600 Sobic010G252700 Sobic010G252700 Sobic002G362200--Sobic010G252700 Sobic008G090000 Sobic008G090000 Sobic002G362200--Sobic008G090000 Sobic008G179000 Sobic008G179000 Sobic002G362200--Sobic008G179000 Sobic002G426100 Sobic002G426100 Sobic002G362200--Sobic002G426100 Sobic001G537400 Sobic001G537400 Sobic002G362200--Sobic001G537400 Sobic001G268300 Sobic001G268300 Sobic002G362200--Sobic001G268300 Sobic008G031200 Sobic008G031200 Sobic002G362200--Sobic008G031200 Sobic003G147500 Sobic003G147500 Sobic002G362200--Sobic003G147500 Sobic008G111600--Sobic002G426100 Sobic006G181800 Sobic006G181800 Sobic008G111600--Sobic006G181800 Sobic008G111600--Sobic002G362200 Sobic004G215900 Sobic004G215900 Sobic008G111600--Sobic004G215900 Sobic002G043000 Sobic002G043000 Sobic008G111600--Sobic002G043000 Sobic001G024000 Sobic001G024000 Sobic008G111600--Sobic001G024000 Sobic002G078100 Sobic002G078100 Sobic008G111600--Sobic002G078100 Sobic002G003300 Sobic002G003300 Sobic008G111600--Sobic002G003300 Sobic003G144000 Sobic003G144000 Sobic008G111600--Sobic003G144000 Sobic010G252700--Sobic008G179000 Sobic007G123100 Sobic007G123100 Sobic010G252700--Sobic007G123100 Sobic009G052100 Sobic009G052100 Sobic010G252700--Sobic009G052100 Sobic010G252700--Sobic002G362200 Sobic001G149100 Sobic001G149100 Sobic010G252700--Sobic001G149100 Sobic010G252700--Sobic008G031200 Sobic010G252700--Sobic008G090000 Sobic006G071628 Sobic006G071628 Sobic010G252700--Sobic006G071628 Sobic010G250800 Sobic010G250800 Sobic010G252700--Sobic010G250800 Sobic006G275500 Sobic006G275500 Sobic008G090000--Sobic006G275500 Sobic008G090000--Sobic003G147500 Sobic006G084300 Sobic006G084300 Sobic008G090000--Sobic006G084300 Sobic006G016700 Sobic006G016700 Sobic008G090000--Sobic006G016700 Sobic008G083500 Sobic008G083500 Sobic008G090000--Sobic008G083500 Sobic009G146250 Sobic009G146250 Sobic008G090000--Sobic009G146250 Sobic002G168000 Sobic002G168000 Sobic008G090000--Sobic002G168000 Sobic009G188900 Sobic009G188900 Sobic008G090000--Sobic009G188900 Sobic008G090000--Sobic002G362200 Sobic008G179000--Sobic010G252700 Sobic008G179000--Sobic008G031200 Sobic008G179000--Sobic001G268300 Sobic008G179000--Sobic002G362200 Sobic008G179000--Sobic007G123100 Sobic008G179000--Sobic001G149100 Sobic004G241000 Sobic004G241000 Sobic008G179000--Sobic004G241000 Sobic004G256900 Sobic004G256900 Sobic008G179000--Sobic004G256900 Sobic008G009000 Sobic008G009000 Sobic008G179000--Sobic008G009000 Sobic009G120400 Sobic009G120400 Sobic002G426100--Sobic009G120400 Sobic002G426100--Sobic008G111600 Sobic002G426100--Sobic006G181800 Sobic002G426100--Sobic002G078100 Sobic002G426100--Sobic002G043000 Sobic006G017800 Sobic006G017800 Sobic002G426100--Sobic006G017800 Sobic002G066800 Sobic002G066800 Sobic002G426100--Sobic002G066800 Sobic007G186400 Sobic007G186400 Sobic002G426100--Sobic007G186400 Sobic004G129500 Sobic004G129500 Sobic002G426100--Sobic004G129500 Sobic001G537400--Sobic002G362200 Sobic001G199500 Sobic001G199500 Sobic001G537400--Sobic001G199500 Sobic009G177200 Sobic009G177200 Sobic001G537400--Sobic009G177200 Sobic001G537400--Sobic009G188900 Sobic001G537400--Sobic002G426100 Sobic001G537400--Sobic008G031200 Sobic001G537400--Sobic009G052100 Sobic007G006800 Sobic007G006800 Sobic001G537400--Sobic007G006800 Sobic001G211500 Sobic001G211500 Sobic001G537400--Sobic001G211500 Sobic009G041800 Sobic009G041800 Sobic001G268300--Sobic009G041800 Sobic001G268300--Sobic008G179000 Sobic006G262800 Sobic006G262800 Sobic001G268300--Sobic006G262800 Sobic001G268300--Sobic002G362200 Sobic001G268300--Sobic008G031200 Sobic003G142400 Sobic003G142400 Sobic001G268300--Sobic003G142400 Sobic010G252200 Sobic010G252200 Sobic001G268300--Sobic010G252200 Sobic004G282500 Sobic004G282500 Sobic001G268300--Sobic004G282500 Sobic005G078700 Sobic005G078700 Sobic001G268300--Sobic005G078700 Sobic008G031200--Sobic008G179000 Sobic008G031200--Sobic001G268300 Sobic008G031200--Sobic010G252700 Sobic008G031200--Sobic002G362200 Sobic003G397100 Sobic003G397100 Sobic008G031200--Sobic003G397100 Sobic003G153900 Sobic003G153900 Sobic008G031200--Sobic003G153900 Sobic002G084400 Sobic002G084400 Sobic008G031200--Sobic002G084400 Sobic008G031200--Sobic001G537400 Sobic002G123600 Sobic002G123600 Sobic008G031200--Sobic002G123600 Sobic003G147500--Sobic006G016700 Sobic003G147500--Sobic006G275500 Sobic009G224300 Sobic009G224300 Sobic003G147500--Sobic009G224300 Sobic003G147500--Sobic008G090000 Sobic010G250400 Sobic010G250400 Sobic003G147500--Sobic010G250400 Sobic003G147500--Sobic002G168000 Sobic007G219100 Sobic007G219100 Sobic003G147500--Sobic007G219100 Sobic004G123200 Sobic004G123200 Sobic003G147500--Sobic004G123200 Sobic003G147500--Sobic009G146250
Octagon: transcription factors


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