Gene annotation
Transcriptome id Sobic.002G043000.1
Synonym Sb02g003680, HEN1, CRM2
Functional annotation HEN1, putative, expressed
UniProt C5XAA0 , C6JSL2
Pfam PF08242
Panther DB PTHR21404
NCBI CDD KOG1045; Uncharacterized conserved protein HEN1/CORYMBOSA2
KEGG Orthology -
Gene Ontology GO:0008173; RNA methyltransferase activity GO:0008171O-methyltransferase activity GO:0001510RNA methylation


Orthologs (automatic annotation)
TAIR AT4G20910 : double-stranded RNA binding protein-related / DsRBD protein-related
RAP-DB (Rice) LOC_Os07g06970.1 : HEN1, putative, expressed
MaizeGDB (Corn) Zm00025a047633 , Zm00025a045080 , Zm00025a052565
Brachypodium KQK20786
Barley HORVU2Hr1G058940.1 , HORVU2Hr1G058940.2 , HORVU2Hr1G058940.3 , HORVU2Hr1G058940.4 , HORVU2Hr1G058940.5 , HORVU2Hr1G058940.6 , HORVU2Hr1G058940.7 , HORVU2Hr1G058940.8 , HORVU2Hr1G058940.9 , HORVU2Hr1G058940.20 , HORVU2Hr1G058940.18 , HORVU2Hr1G058940.19 , HORVU2Hr1G058940.12 , HORVU2Hr1G058940.13 , HORVU2Hr1G058940.10 , HORVU2Hr1G058940.11 , HORVU2Hr1G058940.16 , HORVU2Hr1G058940.17 , HORVU2Hr1G058940.14 , HORVU2Hr1G058940.15
Wheat TraesCS2D02G249000 , TraesCS2D02G249000 , TraesCS2D02G249000 , TraesCS2B02G263600 , TraesCS2D02G114600 , TraesCS2A02G246700 , TraesCS2A02G246700 , TraesCS2A02G246700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G111600 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
2 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
3 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
4 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
5 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
6 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
7 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
8 Sobic.006G280100 SET domain containing protein, expressed -
9 Sobic.004G129500 expressed protein -
10 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
11 Sobic.006G206200 - -
12 Sobic.002G078100 PPR repeat domain containing protein, putative, expressed -
13 Sobic.002G003300 - K10884: XRCC6, KU70, ATP-dependent DNA helicase 2 subunit 1
14 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
15 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
16 Sobic.005G088900 AGAP007117-PA, putative, expressed -
17 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1
18 Sobic.001G373800 MIF4G domain containing protein, putative, expressed K12882: NCBP1, nuclear cap-binding protein subunit 1
19 Sobic.003G361400 nsp1-like C-terminal region family protein, expressed K14306: NUP62, nuclear pore complex protein Nup62
20 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3


Gene co-expression network
sample Sobic002G043000 Sobic002G043000 Sobic008G111600 Sobic008G111600 Sobic002G043000--Sobic008G111600 Sobic004G215900 Sobic004G215900 Sobic002G043000--Sobic004G215900 Sobic002G426100 Sobic002G426100 Sobic002G043000--Sobic002G426100 Sobic006G236000 Sobic006G236000 Sobic002G043000--Sobic006G236000 Sobic008G068100 Sobic008G068100 Sobic002G043000--Sobic008G068100 Sobic006G181800 Sobic006G181800 Sobic002G043000--Sobic006G181800 Sobic004G038100 Sobic004G038100 Sobic002G043000--Sobic004G038100 Sobic006G280100 Sobic006G280100 Sobic002G043000--Sobic006G280100 Sobic004G129500 Sobic004G129500 Sobic002G043000--Sobic004G129500 Sobic008G111600--Sobic002G426100 Sobic008G111600--Sobic006G181800 Sobic002G362200 Sobic002G362200 Sobic008G111600--Sobic002G362200 Sobic008G111600--Sobic004G215900 Sobic008G111600--Sobic002G043000 Sobic001G024000 Sobic001G024000 Sobic008G111600--Sobic001G024000 Sobic002G078100 Sobic002G078100 Sobic008G111600--Sobic002G078100 Sobic002G003300 Sobic002G003300 Sobic008G111600--Sobic002G003300 Sobic003G144000 Sobic003G144000 Sobic008G111600--Sobic003G144000 Sobic004G215900--Sobic008G068100 Sobic004G215900--Sobic006G236000 Sobic009G191500 Sobic009G191500 Sobic004G215900--Sobic009G191500 Sobic004G215900--Sobic002G003300 Sobic004G215900--Sobic001G024000 Sobic004G215900--Sobic008G111600 Sobic004G215900--Sobic004G038100 Sobic002G112600 Sobic002G112600 Sobic004G215900--Sobic002G112600 Sobic004G215900--Sobic002G043000 Sobic009G120400 Sobic009G120400 Sobic002G426100--Sobic009G120400 Sobic002G426100--Sobic008G111600 Sobic002G426100--Sobic006G181800 Sobic002G426100--Sobic002G078100 Sobic002G426100--Sobic002G043000 Sobic006G017800 Sobic006G017800 Sobic002G426100--Sobic006G017800 Sobic002G066800 Sobic002G066800 Sobic002G426100--Sobic002G066800 Sobic007G186400 Sobic007G186400 Sobic002G426100--Sobic007G186400 Sobic002G426100--Sobic004G129500 Sobic006G236000--Sobic004G215900 Sobic006G236000--Sobic008G068100 Sobic003G123100 Sobic003G123100 Sobic006G236000--Sobic003G123100 Sobic006G236000--Sobic002G043000 Sobic006G112700 Sobic006G112700 Sobic006G236000--Sobic006G112700 Sobic006G236000--Sobic006G181800 Sobic006G236000--Sobic009G191500 Sobic006G236000--Sobic002G003300 Sobic006G236000--Sobic008G111600 Sobic008G068100--Sobic009G191500 Sobic008G068100--Sobic004G215900 Sobic005G079201 Sobic005G079201 Sobic008G068100--Sobic005G079201 Sobic008G068100--Sobic006G236000 Sobic008G068100--Sobic002G003300 Sobic001G483800 Sobic001G483800 Sobic008G068100--Sobic001G483800 Sobic005G088900 Sobic005G088900 Sobic008G068100--Sobic005G088900 Sobic003G336500 Sobic003G336500 Sobic008G068100--Sobic003G336500 Sobic008G068100--Sobic001G024000 Sobic006G181800--Sobic008G111600 Sobic006G181800--Sobic004G038100 Sobic006G181800--Sobic002G426100 Sobic006G033101 Sobic006G033101 Sobic006G181800--Sobic006G033101 Sobic002G371600 Sobic002G371600 Sobic006G181800--Sobic002G371600 Sobic006G181800--Sobic002G043000 Sobic008G092800 Sobic008G092800 Sobic006G181800--Sobic008G092800 Sobic006G181800--Sobic006G236000 Sobic010G188000 Sobic010G188000 Sobic006G181800--Sobic010G188000 Sobic004G038100--Sobic006G033101 Sobic004G038100--Sobic006G181800 Sobic001G373000 Sobic001G373000 Sobic004G038100--Sobic001G373000 Sobic004G038100--Sobic004G215900 Sobic004G038100--Sobic010G188000 Sobic003G259600 Sobic003G259600 Sobic004G038100--Sobic003G259600 Sobic001G373800 Sobic001G373800 Sobic004G038100--Sobic001G373800 Sobic004G038100--Sobic006G280100 Sobic009G104900 Sobic009G104900 Sobic004G038100--Sobic009G104900 Sobic009G190200 Sobic009G190200 Sobic006G280100--Sobic009G190200 Sobic002G219900 Sobic002G219900 Sobic006G280100--Sobic002G219900 Sobic004G043750 Sobic004G043750 Sobic006G280100--Sobic004G043750 Sobic006G280100--Sobic004G038100 Sobic007G159200 Sobic007G159200 Sobic006G280100--Sobic007G159200 Sobic003G135500 Sobic003G135500 Sobic006G280100--Sobic003G135500 Sobic007G125700 Sobic007G125700 Sobic006G280100--Sobic007G125700 Sobic002G079100 Sobic002G079100 Sobic006G280100--Sobic002G079100 Sobic008G080500 Sobic008G080500 Sobic006G280100--Sobic008G080500 Sobic007G036800 Sobic007G036800 Sobic004G129500--Sobic007G036800 Sobic010G103500 Sobic010G103500 Sobic004G129500--Sobic010G103500 Sobic001G296800 Sobic001G296800 Sobic004G129500--Sobic001G296800 Sobic003G028400 Sobic003G028400 Sobic004G129500--Sobic003G028400 Sobic003G411700 Sobic003G411700 Sobic004G129500--Sobic003G411700 Sobic004G129500--Sobic002G426100 Sobic002G123600 Sobic002G123600 Sobic004G129500--Sobic002G123600 Sobic004G129500--Sobic002G043000 Sobic001G361200 Sobic001G361200 Sobic004G129500--Sobic001G361200
Octagon: transcription factors


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