Gene annotation
Transcriptome id Sobic.002G003300.2,Sobic.002G003300.1,Sobic.002G003300.3
Synonym Sb02g000480, ATKU70, KU70
Functional annotation -
UniProt A0A1W0W1M9 , C5X745 , A0A1W0W1R4
Pfam PF02735 PF03731 PF02037 PF03730 PF02735 PF03731
Panther DB PTHR12604 PTHR12604:SF2
NCBI CDD KOG2327; DNA-binding subunit of a DNA-dependent protein kinase (Ku70 autoantigen)
KEGG Orthology K10884; XRCC6, KU70, ATP-dependent DNA helicase 2 subunit 1
Gene Ontology GO:0006303; double-strand break repair via nonhomologous end joining GO:0004003DNA helicase activity GO:0003677DNA binding GO:0005634nucleus GO:0003684damaged DNA binding GO:0000723telomere maintenance GO:0006303double-strand break repair via nonhomologous end joining GO:0003677DNA binding GO:0005634nucleus GO:0003684damaged DNA binding GO:0000723telomere maintenance


Orthologs (automatic annotation)
TAIR AT1G16970 : KU70 homolog
RAP-DB (Rice) LOC_Os07g08729.1 : ATP-dependent DNA helicase 2 subunit 1, putative, expressed
MaizeGDB (Corn) Zm00025a016073 , Zm00025a016074
Brachypodium KQK20547
Barley HORVU5Hr1G012090.20 , HORVU5Hr1G012090.17 , HORVU5Hr1G012090.16 , HORVU5Hr1G012090.14 , HORVU5Hr1G012090.13 , HORVU5Hr1G012090.12 , HORVU5Hr1G012090.11 , HORVU5Hr1G012090.10 , HORVU5Hr1G012090.19 , HORVU5Hr1G012090.18 , HORVU5Hr1G012090.9 , HORVU5Hr1G012090.8 , HORVU5Hr1G012090.7 , HORVU5Hr1G012090.6 , HORVU5Hr1G012090.5 , HORVU5Hr1G012090.4 , HORVU5Hr1G012090.3 , HORVU5Hr1G012090.2 , HORVU5Hr1G012090.1 , HORVU5Hr1G012090.22 , HORVU5Hr1G012090.23 , HORVU5Hr1G012090.21 , HORVU5Hr1G012090.15 , HORVU5Hr1G012090.24
Wheat TraesCS5A02G051500 , TraesCS5B02G057400 , TraesCS5D02G062500 , TraesCS5D02G062500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
2 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
3 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
4 Sobic.008G111600 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
5 Sobic.005G088900 AGAP007117-PA, putative, expressed -
6 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
7 Sobic.002G043000 HEN1, putative, expressed -
8 Sobic.001G024000 expressed protein K14844: pumilio homology domain family member 6
9 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
10 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
11 Sobic.002G112600 zinc finger family protein, putative, expressed -
12 Sobic.004G027400 - -
13 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
14 Sobic.003G123100 expressed protein K03352: anaphase-promoting complex subunit 5
15 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
16 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
17 Sobic.005G079201 - -
18 Sobic.007G014800 RNA recognition motif containing protein, putative, expressed -
19 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
20 Sobic.001G483800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tubulin--tyrosine ligase-like protein 12, putative, expressed K16609: tubulin--tyrosine ligase-like protein 12


Gene co-expression network
sample Sobic002G003300 Sobic002G003300 Sobic004G215900 Sobic004G215900 Sobic002G003300--Sobic004G215900 Sobic009G191500 Sobic009G191500 Sobic002G003300--Sobic009G191500 Sobic008G068100 Sobic008G068100 Sobic002G003300--Sobic008G068100 Sobic008G111600 Sobic008G111600 Sobic002G003300--Sobic008G111600 Sobic005G088900 Sobic005G088900 Sobic002G003300--Sobic005G088900 Sobic006G236000 Sobic006G236000 Sobic002G003300--Sobic006G236000 Sobic002G043000 Sobic002G043000 Sobic002G003300--Sobic002G043000 Sobic001G024000 Sobic001G024000 Sobic002G003300--Sobic001G024000 Sobic006G181800 Sobic006G181800 Sobic002G003300--Sobic006G181800 Sobic004G215900--Sobic008G068100 Sobic004G215900--Sobic006G236000 Sobic004G215900--Sobic009G191500 Sobic004G215900--Sobic002G003300 Sobic004G215900--Sobic001G024000 Sobic004G215900--Sobic008G111600 Sobic004G038100 Sobic004G038100 Sobic004G215900--Sobic004G038100 Sobic002G112600 Sobic002G112600 Sobic004G215900--Sobic002G112600 Sobic004G215900--Sobic002G043000 Sobic009G191500--Sobic008G068100 Sobic009G191500--Sobic004G215900 Sobic001G483800 Sobic001G483800 Sobic009G191500--Sobic001G483800 Sobic005G079201 Sobic005G079201 Sobic009G191500--Sobic005G079201 Sobic009G191500--Sobic005G088900 Sobic009G191500--Sobic002G003300 Sobic010G153300 Sobic010G153300 Sobic009G191500--Sobic010G153300 Sobic007G060600 Sobic007G060600 Sobic009G191500--Sobic007G060600 Sobic003G336500 Sobic003G336500 Sobic009G191500--Sobic003G336500 Sobic008G068100--Sobic009G191500 Sobic008G068100--Sobic004G215900 Sobic008G068100--Sobic005G079201 Sobic008G068100--Sobic006G236000 Sobic008G068100--Sobic002G003300 Sobic008G068100--Sobic001G483800 Sobic008G068100--Sobic005G088900 Sobic008G068100--Sobic003G336500 Sobic008G068100--Sobic001G024000 Sobic002G426100 Sobic002G426100 Sobic008G111600--Sobic002G426100 Sobic008G111600--Sobic006G181800 Sobic002G362200 Sobic002G362200 Sobic008G111600--Sobic002G362200 Sobic008G111600--Sobic004G215900 Sobic008G111600--Sobic002G043000 Sobic008G111600--Sobic001G024000 Sobic002G078100 Sobic002G078100 Sobic008G111600--Sobic002G078100 Sobic008G111600--Sobic002G003300 Sobic003G144000 Sobic003G144000 Sobic008G111600--Sobic003G144000 Sobic001G199500 Sobic001G199500 Sobic005G088900--Sobic001G199500 Sobic005G088900--Sobic009G191500 Sobic009G176300 Sobic009G176300 Sobic005G088900--Sobic009G176300 Sobic005G088900--Sobic004G215900 Sobic005G088900--Sobic008G068100 Sobic003G432300 Sobic003G432300 Sobic005G088900--Sobic003G432300 Sobic005G088900--Sobic003G144000 Sobic002G133000 Sobic002G133000 Sobic005G088900--Sobic002G133000 Sobic005G088900--Sobic002G003300 Sobic006G236000--Sobic004G215900 Sobic006G236000--Sobic008G068100 Sobic003G123100 Sobic003G123100 Sobic006G236000--Sobic003G123100 Sobic006G236000--Sobic002G043000 Sobic006G112700 Sobic006G112700 Sobic006G236000--Sobic006G112700 Sobic006G236000--Sobic006G181800 Sobic006G236000--Sobic009G191500 Sobic006G236000--Sobic002G003300 Sobic006G236000--Sobic008G111600 Sobic002G043000--Sobic008G111600 Sobic002G043000--Sobic004G215900 Sobic002G043000--Sobic002G426100 Sobic002G043000--Sobic006G236000 Sobic002G043000--Sobic008G068100 Sobic002G043000--Sobic006G181800 Sobic002G043000--Sobic004G038100 Sobic006G280100 Sobic006G280100 Sobic002G043000--Sobic006G280100 Sobic004G129500 Sobic004G129500 Sobic002G043000--Sobic004G129500 Sobic001G024000--Sobic004G215900 Sobic010G205900 Sobic010G205900 Sobic001G024000--Sobic010G205900 Sobic001G024000--Sobic008G111600 Sobic009G246500 Sobic009G246500 Sobic001G024000--Sobic009G246500 Sobic001G024000--Sobic008G068100 Sobic003G412000 Sobic003G412000 Sobic001G024000--Sobic003G412000 Sobic008G049100 Sobic008G049100 Sobic001G024000--Sobic008G049100 Sobic003G123200 Sobic003G123200 Sobic001G024000--Sobic003G123200 Sobic001G024000--Sobic002G003300 Sobic006G181800--Sobic008G111600 Sobic006G181800--Sobic004G038100 Sobic006G181800--Sobic002G426100 Sobic006G033101 Sobic006G033101 Sobic006G181800--Sobic006G033101 Sobic002G371600 Sobic002G371600 Sobic006G181800--Sobic002G371600 Sobic006G181800--Sobic002G043000 Sobic008G092800 Sobic008G092800 Sobic006G181800--Sobic008G092800 Sobic006G181800--Sobic006G236000 Sobic010G188000 Sobic010G188000 Sobic006G181800--Sobic010G188000
Octagon: transcription factors


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