Gene annotation
Transcriptome id Sobic.007G014800.1
Synonym Sb07g001330, EMB140
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6PFD2
Pfam PF05843 PF00076
Panther DB PTHR24012 PTHR24012:SF358
NCBI CDD KOG0128; RNA-binding protein SART3 (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0006397; mRNA processing GO:0005634nucleus GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G24270 : EMBRYO DEFECTIVE 140
RAP-DB (Rice) LOC_Os08g02130.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a040236
Brachypodium -
Barley HORVU7Hr1G113320.12 , HORVU7Hr1G076160.9 , HORVU7Hr1G076160.8 , HORVU7Hr1G076160.7 , HORVU7Hr1G076160.6 , HORVU7Hr1G076160.5 , HORVU7Hr1G076160.4 , HORVU7Hr1G076160.3 , HORVU7Hr1G076160.2 , HORVU7Hr1G076160.1 , HORVU7Hr1G113320.7 , HORVU7Hr1G113320.6 , HORVU7Hr1G113320.5 , HORVU7Hr1G113320.4 , HORVU7Hr1G113320.3 , HORVU7Hr1G113320.2 , HORVU7Hr1G113320.1 , HORVU7Hr1G113320.9 , HORVU7Hr1G113320.8 , HORVU7Hr1G113320.17 , HORVU7Hr1G113320.15 , HORVU7Hr1G113320.14 , HORVU7Hr1G113320.13 , HORVU7Hr1G113320.11 , HORVU7Hr1G113320.10 , HORVU7Hr1G076160.10
Wheat TraesCS7B02G219700 , TraesCS7A02G318800 , TraesCS7D02G315400 , TraesCS7D02G315400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G014800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G123100 expressed protein K03352: anaphase-promoting complex subunit 5
2 Sobic.009G142000 plus-3 domain containing protein, putative, expressed -
3 Sobic.004G086200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
4 Sobic.002G112600 zinc finger family protein, putative, expressed -
5 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
6 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
7 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
8 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
9 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
10 Sobic.001G239800 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
11 Sobic.009G235200 ribosomal RNA large subunit methyltransferase J, putative, expressed K14857: SPB1, AdoMet-dependent rRNA methyltransferase SPB1
12 Sobic.010G224700 - K17680: twinkle protein
13 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6
14 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
15 Sobic.010G262100 expressed protein -
16 Sobic.003G309050 - -
17 Sobic.001G453500 expressed protein -
18 Sobic.009G066400 MAR-binding filament-like protein 1, putative, expressed -
19 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
20 Sobic.004G111000 bromodomain containing protein, expressed -


Gene co-expression network
sample Sobic007G014800 Sobic007G014800 Sobic003G123100 Sobic003G123100 Sobic007G014800--Sobic003G123100 Sobic009G142000 Sobic009G142000 Sobic007G014800--Sobic009G142000 Sobic004G086200 Sobic004G086200 Sobic007G014800--Sobic004G086200 Sobic002G112600 Sobic002G112600 Sobic007G014800--Sobic002G112600 Sobic001G346900 Sobic001G346900 Sobic007G014800--Sobic001G346900 Sobic004G285000 Sobic004G285000 Sobic007G014800--Sobic004G285000 Sobic004G215900 Sobic004G215900 Sobic007G014800--Sobic004G215900 Sobic006G226300 Sobic006G226300 Sobic007G014800--Sobic006G226300 Sobic008G163500 Sobic008G163500 Sobic007G014800--Sobic008G163500 Sobic003G123100--Sobic007G014800 Sobic006G236000 Sobic006G236000 Sobic003G123100--Sobic006G236000 Sobic003G123100--Sobic009G142000 Sobic010G262100 Sobic010G262100 Sobic003G123100--Sobic010G262100 Sobic001G239800 Sobic001G239800 Sobic003G123100--Sobic001G239800 Sobic001G451300 Sobic001G451300 Sobic003G123100--Sobic001G451300 Sobic002G252100 Sobic002G252100 Sobic003G123100--Sobic002G252100 Sobic005G010900 Sobic005G010900 Sobic003G123100--Sobic005G010900 Sobic006G112700 Sobic006G112700 Sobic003G123100--Sobic006G112700 Sobic003G294600 Sobic003G294600 Sobic009G142000--Sobic003G294600 Sobic009G142000--Sobic001G451300 Sobic004G085000 Sobic004G085000 Sobic009G142000--Sobic004G085000 Sobic007G029200 Sobic007G029200 Sobic009G142000--Sobic007G029200 Sobic001G453000 Sobic001G453000 Sobic009G142000--Sobic001G453000 Sobic009G142000--Sobic003G123100 Sobic008G132000 Sobic008G132000 Sobic009G142000--Sobic008G132000 Sobic005G200900 Sobic005G200900 Sobic009G142000--Sobic005G200900 Sobic001G536000 Sobic001G536000 Sobic009G142000--Sobic001G536000 Sobic004G086200--Sobic001G346900 Sobic004G086200--Sobic004G285000 Sobic001G134300 Sobic001G134300 Sobic004G086200--Sobic001G134300 Sobic001G245900 Sobic001G245900 Sobic004G086200--Sobic001G245900 Sobic001G306900 Sobic001G306900 Sobic004G086200--Sobic001G306900 Sobic010G096000 Sobic010G096000 Sobic004G086200--Sobic010G096000 Sobic010G279900 Sobic010G279900 Sobic004G086200--Sobic010G279900 Sobic001G246500 Sobic001G246500 Sobic004G086200--Sobic001G246500 Sobic010G065300 Sobic010G065300 Sobic004G086200--Sobic010G065300 Sobic004G151000 Sobic004G151000 Sobic002G112600--Sobic004G151000 Sobic002G112600--Sobic004G215900 Sobic010G224700 Sobic010G224700 Sobic002G112600--Sobic010G224700 Sobic002G112600--Sobic007G014800 Sobic005G000300 Sobic005G000300 Sobic002G112600--Sobic005G000300 Sobic004G027400 Sobic004G027400 Sobic002G112600--Sobic004G027400 Sobic009G163600 Sobic009G163600 Sobic002G112600--Sobic009G163600 Sobic001G453500 Sobic001G453500 Sobic002G112600--Sobic001G453500 Sobic004G027300 Sobic004G027300 Sobic002G112600--Sobic004G027300 Sobic001G346900--Sobic004G086200 Sobic003G409200 Sobic003G409200 Sobic001G346900--Sobic003G409200 Sobic001G346900--Sobic001G134300 Sobic003G042400 Sobic003G042400 Sobic001G346900--Sobic003G042400 Sobic008G147200 Sobic008G147200 Sobic001G346900--Sobic008G147200 Sobic001G346900--Sobic004G285000 Sobic003G416700 Sobic003G416700 Sobic001G346900--Sobic003G416700 Sobic001G346900--Sobic010G096000 Sobic002G422100 Sobic002G422100 Sobic001G346900--Sobic002G422100 Sobic004G285000--Sobic004G086200 Sobic004G111000 Sobic004G111000 Sobic004G285000--Sobic004G111000 Sobic004G285000--Sobic001G346900 Sobic003G427100 Sobic003G427100 Sobic004G285000--Sobic003G427100 Sobic009G151200 Sobic009G151200 Sobic004G285000--Sobic009G151200 Sobic010G215900 Sobic010G215900 Sobic004G285000--Sobic010G215900 Sobic004G285000--Sobic003G409200 Sobic007G044100 Sobic007G044100 Sobic004G285000--Sobic007G044100 Sobic001G013300 Sobic001G013300 Sobic004G285000--Sobic001G013300 Sobic008G068100 Sobic008G068100 Sobic004G215900--Sobic008G068100 Sobic004G215900--Sobic006G236000 Sobic009G191500 Sobic009G191500 Sobic004G215900--Sobic009G191500 Sobic002G003300 Sobic002G003300 Sobic004G215900--Sobic002G003300 Sobic001G024000 Sobic001G024000 Sobic004G215900--Sobic001G024000 Sobic008G111600 Sobic008G111600 Sobic004G215900--Sobic008G111600 Sobic004G038100 Sobic004G038100 Sobic004G215900--Sobic004G038100 Sobic004G215900--Sobic002G112600 Sobic002G043000 Sobic002G043000 Sobic004G215900--Sobic002G043000 Sobic002G142600 Sobic002G142600 Sobic006G226300--Sobic002G142600 Sobic006G226300--Sobic001G346900 Sobic005G157100 Sobic005G157100 Sobic006G226300--Sobic005G157100 Sobic006G226300--Sobic003G042400 Sobic006G226300--Sobic004G285000 Sobic006G226300--Sobic008G147200 Sobic005G137700 Sobic005G137700 Sobic006G226300--Sobic005G137700 Sobic003G258900 Sobic003G258900 Sobic006G226300--Sobic003G258900 Sobic006G226300--Sobic001G246500 Sobic005G028100 Sobic005G028100 Sobic008G163500--Sobic005G028100 Sobic003G123200 Sobic003G123200 Sobic008G163500--Sobic003G123200 Sobic009G246500 Sobic009G246500 Sobic008G163500--Sobic009G246500 Sobic010G205900 Sobic010G205900 Sobic008G163500--Sobic010G205900 Sobic008G049100 Sobic008G049100 Sobic008G163500--Sobic008G049100 Sobic005G098800 Sobic005G098800 Sobic008G163500--Sobic005G098800 Sobic001G422500 Sobic001G422500 Sobic008G163500--Sobic001G422500 Sobic008G163500--Sobic010G224700 Sobic004G036700 Sobic004G036700 Sobic008G163500--Sobic004G036700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.