Gene annotation
Transcriptome id Sobic.001G239800.1
Synonym Sb01g021230
Functional annotation 3-5 exonuclease family protein, putative, expressed
UniProt A0A1B6QKN7
Pfam PF08066 PF00570 PF01612
Panther DB PTHR12124 PTHR12124:SF43
NCBI CDD KOG2206; Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)
KEGG Orthology K12591; RRP6, exosome complex exonuclease RRP6
Gene Ontology GO:0006396; RNA processing GO:0000176nuclear exosome (RNase complex) GO:0005622intracellular GO:0003676nucleic acid binding GO:00084083'-5' exonuclease activity GO:0006139nucleobase-containing compound metabolic process


Orthologs (automatic annotation)
TAIR AT5G35910 : Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain
RAP-DB (Rice) LOC_Os10g30100.1 : 3-5 exonuclease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a003628 , Zm00025a036043 , Zm00025a005231 , Zm00025a051211 , Zm00025a006828 , Zm00025a000724 , Zm00025a012497 , Zm00025a058017 , Zm00025a058015 , Zm00025a058106
Brachypodium KQK23561 , KQJ96813 , KQK23562 , PNT67421 , PNT78162 , PNT78163
Barley HORVU1Hr1G036040.15 , HORVU1Hr1G036040.10 , HORVU1Hr1G036040.11 , HORVU1Hr1G036040.12 , HORVU1Hr1G036040.13 , HORVU1Hr1G036040.6 , HORVU1Hr1G036040.7 , HORVU1Hr1G036040.4 , HORVU1Hr1G036040.1 , HORVU1Hr1G036040.8 , HORVU1Hr1G036040.9
Wheat TraesCS4D02G272400 , TraesCS4D02G272400 , TraesCS1D02G138000 , TraesCS4A02G032200 , TraesCS1B02G155600 , TraesCS1B02G155600 , TraesCS1A02G137000 , TraesCS1A02G137000 , TraesCS4B02G273400 , TraesCS4B02G273400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G112700 ATPOT1, putative, expressed -
2 Sobic.003G123100 expressed protein K03352: anaphase-promoting complex subunit 5
3 Sobic.002G318800 - K14776: DDX10, ATP-dependent RNA helicase DDX10/DBP4
4 Sobic.003G330900 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
5 Sobic.001G536000 actin, putative, expressed K11340: ACTL6A, actin-like protein 6A
6 Sobic.002G252100 methyl-binding domain protein MBD, putative, expressed -
7 Sobic.007G014800 RNA recognition motif containing protein, putative, expressed -
8 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
9 Sobic.004G315500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed K10756: replication factor C subunit 3/5
10 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
11 Sobic.007G217100 sas10/Utp3 family protein, expressed K14767: UTP3, U3 small nucleolar RNA-associated protein 3
12 Sobic.004G321700 mitochondrial transcription termination factor family protein, putative, expressed K15032: mTERF domain-containing protein, mitochondrial
13 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
14 Sobic.003G375200 mitotic checkpoint family protein, putative, expressed -
15 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
16 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
17 Sobic.004G034700 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
18 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
19 Sobic.005G010900 expressed protein K14311: nuclear pore complex protein Nup188
20 Sobic.009G142000 plus-3 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G239800 Sobic001G239800 Sobic006G112700 Sobic006G112700 Sobic001G239800--Sobic006G112700 Sobic003G123100 Sobic003G123100 Sobic001G239800--Sobic003G123100 Sobic002G318800 Sobic002G318800 Sobic001G239800--Sobic002G318800 Sobic003G330900 Sobic003G330900 Sobic001G239800--Sobic003G330900 Sobic001G536000 Sobic001G536000 Sobic001G239800--Sobic001G536000 Sobic002G252100 Sobic002G252100 Sobic001G239800--Sobic002G252100 Sobic007G014800 Sobic007G014800 Sobic001G239800--Sobic007G014800 Sobic006G125900 Sobic006G125900 Sobic001G239800--Sobic006G125900 Sobic004G315500 Sobic004G315500 Sobic001G239800--Sobic004G315500 Sobic008G080500 Sobic008G080500 Sobic006G112700--Sobic008G080500 Sobic003G209400 Sobic003G209400 Sobic006G112700--Sobic003G209400 Sobic006G112700--Sobic001G239800 Sobic006G236000 Sobic006G236000 Sobic006G112700--Sobic006G236000 Sobic009G142000 Sobic009G142000 Sobic006G112700--Sobic009G142000 Sobic010G262100 Sobic010G262100 Sobic006G112700--Sobic010G262100 Sobic006G112700--Sobic003G123100 Sobic008G092800 Sobic008G092800 Sobic006G112700--Sobic008G092800 Sobic001G451300 Sobic001G451300 Sobic006G112700--Sobic001G451300 Sobic003G123100--Sobic007G014800 Sobic003G123100--Sobic006G236000 Sobic003G123100--Sobic009G142000 Sobic003G123100--Sobic010G262100 Sobic003G123100--Sobic001G239800 Sobic003G123100--Sobic001G451300 Sobic003G123100--Sobic002G252100 Sobic005G010900 Sobic005G010900 Sobic003G123100--Sobic005G010900 Sobic003G123100--Sobic006G112700 Sobic002G318800--Sobic001G239800 Sobic001G450000 Sobic001G450000 Sobic002G318800--Sobic001G450000 Sobic007G097400 Sobic007G097400 Sobic002G318800--Sobic007G097400 Sobic007G075800 Sobic007G075800 Sobic002G318800--Sobic007G075800 Sobic002G318800--Sobic003G209400 Sobic002G318800--Sobic006G125900 Sobic008G051200 Sobic008G051200 Sobic002G318800--Sobic008G051200 Sobic007G201700 Sobic007G201700 Sobic002G318800--Sobic007G201700 Sobic002G112600 Sobic002G112600 Sobic002G318800--Sobic002G112600 Sobic003G330900--Sobic001G239800 Sobic001G440100 Sobic001G440100 Sobic003G330900--Sobic001G440100 Sobic001G052400 Sobic001G052400 Sobic003G330900--Sobic001G052400 Sobic004G006600 Sobic004G006600 Sobic003G330900--Sobic004G006600 Sobic002G374300 Sobic002G374300 Sobic003G330900--Sobic002G374300 Sobic003G330900--Sobic006G125900 Sobic003G330900--Sobic004G315500 Sobic010G038100 Sobic010G038100 Sobic003G330900--Sobic010G038100 Sobic001G501800 Sobic001G501800 Sobic003G330900--Sobic001G501800 Sobic004G034700 Sobic004G034700 Sobic001G536000--Sobic004G034700 Sobic001G536000--Sobic009G142000 Sobic002G405500 Sobic002G405500 Sobic001G536000--Sobic002G405500 Sobic001G536000--Sobic001G451300 Sobic001G536000--Sobic001G239800 Sobic001G453000 Sobic001G453000 Sobic001G536000--Sobic001G453000 Sobic003G375200 Sobic003G375200 Sobic001G536000--Sobic003G375200 Sobic001G536000--Sobic006G112700 Sobic003G294600 Sobic003G294600 Sobic001G536000--Sobic003G294600 Sobic006G245900 Sobic006G245900 Sobic002G252100--Sobic006G245900 Sobic002G252100--Sobic003G123100 Sobic002G252100--Sobic001G239800 Sobic001G346900 Sobic001G346900 Sobic002G252100--Sobic001G346900 Sobic002G371600 Sobic002G371600 Sobic002G252100--Sobic002G371600 Sobic006G270600 Sobic006G270600 Sobic002G252100--Sobic006G270600 Sobic001G098400 Sobic001G098400 Sobic002G252100--Sobic001G098400 Sobic002G252100--Sobic004G315500 Sobic002G252100--Sobic007G014800 Sobic007G014800--Sobic003G123100 Sobic007G014800--Sobic009G142000 Sobic004G086200 Sobic004G086200 Sobic007G014800--Sobic004G086200 Sobic007G014800--Sobic002G112600 Sobic007G014800--Sobic001G346900 Sobic004G285000 Sobic004G285000 Sobic007G014800--Sobic004G285000 Sobic004G215900 Sobic004G215900 Sobic007G014800--Sobic004G215900 Sobic006G226300 Sobic006G226300 Sobic007G014800--Sobic006G226300 Sobic008G163500 Sobic008G163500 Sobic007G014800--Sobic008G163500 Sobic001G453400 Sobic001G453400 Sobic006G125900--Sobic001G453400 Sobic001G145400 Sobic001G145400 Sobic006G125900--Sobic001G145400 Sobic006G125900--Sobic001G052400 Sobic006G125900--Sobic008G051200 Sobic010G174700 Sobic010G174700 Sobic006G125900--Sobic010G174700 Sobic001G429600 Sobic001G429600 Sobic006G125900--Sobic001G429600 Sobic004G340400 Sobic004G340400 Sobic006G125900--Sobic004G340400 Sobic007G217100 Sobic007G217100 Sobic006G125900--Sobic007G217100 Sobic010G003400 Sobic010G003400 Sobic006G125900--Sobic010G003400 Sobic001G488100 Sobic001G488100 Sobic004G315500--Sobic001G488100 Sobic004G315500--Sobic005G010900 Sobic001G373000 Sobic001G373000 Sobic004G315500--Sobic001G373000 Sobic010G188000 Sobic010G188000 Sobic004G315500--Sobic010G188000 Sobic004G322300 Sobic004G322300 Sobic004G315500--Sobic004G322300 Sobic006G137700 Sobic006G137700 Sobic004G315500--Sobic006G137700 Sobic004G315500--Sobic001G239800 Sobic007G089800 Sobic007G089800 Sobic004G315500--Sobic007G089800 Sobic004G315500--Sobic003G123100
Octagon: transcription factors


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