Gene annotation
Transcriptome id Sobic.006G112700.2,Sobic.006G112700.1,Sobic.006G112700.3
Synonym AtPOT1b, Sb06g019440
Functional annotation ATPOT1, putative, expressed
UniProt A0A1B6PLH8
Pfam PF02765
Panther DB PTHR14513
NCBI CDD KOG4757; Predicted telomere binding protein
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0000784nuclear chromosome, telomeric region GO:0000723telomere maintenance


Orthologs (automatic annotation)
TAIR AT5G06310 : Nucleic acid-binding, OB-fold-like protein
RAP-DB (Rice) LOC_Os04g39280.1 : ATPOT1, putative, expressed
MaizeGDB (Corn) Zm00025a057378 , Zm00025a056260
Brachypodium -
Barley -
Wheat TraesCS2D02G329600 , TraesCS2B02G348600 , TraesCS2B02G348600 , TraesCS2A02G335300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G080500 expressed protein -
2 Sobic.003G209400 expressed protein -
3 Sobic.001G239800 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
4 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
5 Sobic.009G142000 plus-3 domain containing protein, putative, expressed -
6 Sobic.010G262100 expressed protein -
7 Sobic.003G123100 expressed protein K03352: anaphase-promoting complex subunit 5
8 Sobic.008G092800 expressed protein -
9 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
10 Sobic.003G341700 exo70 exocyst complex subunit domain containing protein, expressed -
11 Sobic.001G536000 actin, putative, expressed K11340: ACTL6A, actin-like protein 6A
12 Sobic.009G007700 expressed protein -
13 Sobic.002G412700 histone-arginine methyltransferase CARM1, putative, expressed K05931: CARM1, type I protein arginine methyltransferase
14 Sobic.004G034700 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
15 Sobic.007G014800 RNA recognition motif containing protein, putative, expressed -
16 Sobic.005G200900 SCC3, putative, expressed K06671: STAG1_2, SCC3, cohesin complex subunit SA-1/2
17 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
18 Sobic.007G047600 expressed protein -
19 Sobic.003G309050 - -
20 Sobic.002G252100 methyl-binding domain protein MBD, putative, expressed -


Gene co-expression network
sample Sobic006G112700 Sobic006G112700 Sobic008G080500 Sobic008G080500 Sobic006G112700--Sobic008G080500 Sobic003G209400 Sobic003G209400 Sobic006G112700--Sobic003G209400 Sobic001G239800 Sobic001G239800 Sobic006G112700--Sobic001G239800 Sobic006G236000 Sobic006G236000 Sobic006G112700--Sobic006G236000 Sobic009G142000 Sobic009G142000 Sobic006G112700--Sobic009G142000 Sobic010G262100 Sobic010G262100 Sobic006G112700--Sobic010G262100 Sobic003G123100 Sobic003G123100 Sobic006G112700--Sobic003G123100 Sobic008G092800 Sobic008G092800 Sobic006G112700--Sobic008G092800 Sobic001G451300 Sobic001G451300 Sobic006G112700--Sobic001G451300 Sobic007G159200 Sobic007G159200 Sobic008G080500--Sobic007G159200 Sobic008G080500--Sobic010G262100 Sobic004G355800 Sobic004G355800 Sobic008G080500--Sobic004G355800 Sobic008G080500--Sobic006G112700 Sobic002G079100 Sobic002G079100 Sobic008G080500--Sobic002G079100 Sobic005G200900 Sobic005G200900 Sobic008G080500--Sobic005G200900 Sobic010G269300 Sobic010G269300 Sobic008G080500--Sobic010G269300 Sobic003G299500 Sobic003G299500 Sobic008G080500--Sobic003G299500 Sobic002G235900 Sobic002G235900 Sobic008G080500--Sobic002G235900 Sobic009G007700 Sobic009G007700 Sobic003G209400--Sobic009G007700 Sobic002G412700 Sobic002G412700 Sobic003G209400--Sobic002G412700 Sobic003G209400--Sobic006G112700 Sobic010G085200 Sobic010G085200 Sobic003G209400--Sobic010G085200 Sobic003G209400--Sobic008G080500 Sobic007G097400 Sobic007G097400 Sobic003G209400--Sobic007G097400 Sobic004G034700 Sobic004G034700 Sobic003G209400--Sobic004G034700 Sobic008G017100 Sobic008G017100 Sobic003G209400--Sobic008G017100 Sobic002G356600 Sobic002G356600 Sobic003G209400--Sobic002G356600 Sobic001G239800--Sobic006G112700 Sobic001G239800--Sobic003G123100 Sobic002G318800 Sobic002G318800 Sobic001G239800--Sobic002G318800 Sobic003G330900 Sobic003G330900 Sobic001G239800--Sobic003G330900 Sobic001G536000 Sobic001G536000 Sobic001G239800--Sobic001G536000 Sobic002G252100 Sobic002G252100 Sobic001G239800--Sobic002G252100 Sobic007G014800 Sobic007G014800 Sobic001G239800--Sobic007G014800 Sobic006G125900 Sobic006G125900 Sobic001G239800--Sobic006G125900 Sobic004G315500 Sobic004G315500 Sobic001G239800--Sobic004G315500 Sobic004G215900 Sobic004G215900 Sobic006G236000--Sobic004G215900 Sobic008G068100 Sobic008G068100 Sobic006G236000--Sobic008G068100 Sobic006G236000--Sobic003G123100 Sobic002G043000 Sobic002G043000 Sobic006G236000--Sobic002G043000 Sobic006G236000--Sobic006G112700 Sobic006G181800 Sobic006G181800 Sobic006G236000--Sobic006G181800 Sobic009G191500 Sobic009G191500 Sobic006G236000--Sobic009G191500 Sobic002G003300 Sobic002G003300 Sobic006G236000--Sobic002G003300 Sobic008G111600 Sobic008G111600 Sobic006G236000--Sobic008G111600 Sobic003G294600 Sobic003G294600 Sobic009G142000--Sobic003G294600 Sobic009G142000--Sobic001G451300 Sobic004G085000 Sobic004G085000 Sobic009G142000--Sobic004G085000 Sobic007G029200 Sobic007G029200 Sobic009G142000--Sobic007G029200 Sobic001G453000 Sobic001G453000 Sobic009G142000--Sobic001G453000 Sobic009G142000--Sobic003G123100 Sobic008G132000 Sobic008G132000 Sobic009G142000--Sobic008G132000 Sobic009G142000--Sobic005G200900 Sobic009G142000--Sobic001G536000 Sobic010G262100--Sobic001G451300 Sobic010G138900 Sobic010G138900 Sobic010G262100--Sobic010G138900 Sobic001G248100 Sobic001G248100 Sobic010G262100--Sobic001G248100 Sobic010G262100--Sobic008G080500 Sobic002G043100 Sobic002G043100 Sobic010G262100--Sobic002G043100 Sobic002G399800 Sobic002G399800 Sobic010G262100--Sobic002G399800 Sobic002G371600 Sobic002G371600 Sobic010G262100--Sobic002G371600 Sobic003G314700 Sobic003G314700 Sobic010G262100--Sobic003G314700 Sobic010G262100--Sobic008G092800 Sobic003G123100--Sobic007G014800 Sobic003G123100--Sobic006G236000 Sobic003G123100--Sobic009G142000 Sobic003G123100--Sobic010G262100 Sobic003G123100--Sobic001G239800 Sobic003G123100--Sobic001G451300 Sobic003G123100--Sobic002G252100 Sobic005G010900 Sobic005G010900 Sobic003G123100--Sobic005G010900 Sobic003G123100--Sobic006G112700 Sobic003G143800 Sobic003G143800 Sobic008G092800--Sobic003G143800 Sobic007G145400 Sobic007G145400 Sobic008G092800--Sobic007G145400 Sobic003G016500 Sobic003G016500 Sobic008G092800--Sobic003G016500 Sobic008G092800--Sobic001G248100 Sobic008G092800--Sobic010G262100 Sobic001G437400 Sobic001G437400 Sobic008G092800--Sobic001G437400 Sobic007G047600 Sobic007G047600 Sobic008G092800--Sobic007G047600 Sobic008G092800--Sobic006G181800 Sobic008G092800--Sobic002G371600 Sobic001G451300--Sobic010G262100 Sobic001G451300--Sobic004G034700 Sobic001G451300--Sobic010G138900 Sobic001G451300--Sobic002G043100 Sobic003G309050 Sobic003G309050 Sobic001G451300--Sobic003G309050 Sobic010G174700 Sobic010G174700 Sobic001G451300--Sobic010G174700 Sobic001G451300--Sobic002G371600 Sobic001G451300--Sobic009G142000 Sobic001G451300--Sobic002G399800
Octagon: transcription factors


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