Gene annotation
Transcriptome id Sobic.001G536000.1
Synonym ARP4, Sb01g049880, ATARP4
Functional annotation actin, putative, expressed
UniProt C5WMN2
Pfam PF00022
Panther DB PTHR11937 PTHR11937:SF235
NCBI CDD -
KEGG Orthology K11340; ACTL6A, actin-like protein 6A
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G18450 : actin-related protein 4
RAP-DB (Rice) LOC_Os08g04280.2 : actin, putative, expressed
MaizeGDB (Corn) Zm00025a000172
Brachypodium KQK24062
Barley HORVU5Hr1G088030.2 , HORVU5Hr1G088030.3 , HORVU5Hr1G088030.1 , HORVU5Hr1G088030.6 , HORVU5Hr1G088030.7 , HORVU5Hr1G088030.4 , HORVU5Hr1G088030.5 , HORVU5Hr1G088030.8 , HORVU5Hr1G088030.9 , HORVU6Hr1G032610.8 , HORVU6Hr1G032610.9 , HORVU6Hr1G032610.1 , HORVU6Hr1G032610.2 , HORVU6Hr1G032610.3 , HORVU6Hr1G032610.4 , HORVU6Hr1G032610.5 , HORVU6Hr1G032610.6 , HORVU6Hr1G032610.7 , HORVU5Hr1G088030.10 , HORVU5Hr1G088030.11 , HORVU5Hr1G088030.12 , HORVU5Hr1G088030.13 , HORVU5Hr1G088030.14 , HORVU5Hr1G088030.15 , HORVU5Hr1G088030.16 , HORVU5Hr1G088030.17 , HORVU5Hr1G088030.18 , HORVU5Hr1G088030.19 , HORVU5Hr1G088030.25 , HORVU5Hr1G088030.24 , HORVU5Hr1G088030.27 , HORVU5Hr1G088030.26 , HORVU5Hr1G088030.21 , HORVU5Hr1G088030.20 , HORVU5Hr1G088030.23 , HORVU5Hr1G088030.22 , HORVU6Hr1G032610.10 , HORVU6Hr1G032610.11
Wheat TraesCS6A02G162300 , TraesCS6A02G162300 , TraesCS5D02G364800 , TraesCS6D02G149800 , TraesCS5B02G358500 , TraesCS5A02G356000 , TraesCS6B02G189000
Populus -


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cDNA sequences
Sobic.001G536000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G034700 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
2 Sobic.009G142000 plus-3 domain containing protein, putative, expressed -
3 Sobic.002G405500 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11841: USP10, ubiquitin carboxyl-terminal hydrolase 10
4 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
5 Sobic.001G239800 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
6 Sobic.001G453000 no apical meristem protein, putative, expressed -
7 Sobic.003G375200 mitotic checkpoint family protein, putative, expressed -
8 Sobic.006G112700 ATPOT1, putative, expressed -
9 Sobic.003G294600 Homeobox domain containing protein, expressed -
10 Sobic.005G200900 SCC3, putative, expressed K06671: STAG1_2, SCC3, cohesin complex subunit SA-1/2
11 Sobic.002G412700 histone-arginine methyltransferase CARM1, putative, expressed K05931: CARM1, type I protein arginine methyltransferase
12 Sobic.008G009600 double-stranded RNA binding motif containing protein, expressed -
13 Sobic.004G155600 dnaJ domain containing protein, expressed -
14 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
15 Sobic.006G049600 methyltransferase domain containing protein, expressed -
16 Sobic.009G176700 expressed protein -
17 Sobic.003G123100 expressed protein K03352: anaphase-promoting complex subunit 5
18 Sobic.007G106700 NOL1/NOP2/sun family protein, putative, expressed -
19 Sobic.010G138900 cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed K11991: tRNA(adenine34) deaminase
20 Sobic.003G250900 AAA-type ATPase family protein, putative, expressed -


Gene co-expression network
sample Sobic001G536000 Sobic001G536000 Sobic004G034700 Sobic004G034700 Sobic001G536000--Sobic004G034700 Sobic009G142000 Sobic009G142000 Sobic001G536000--Sobic009G142000 Sobic002G405500 Sobic002G405500 Sobic001G536000--Sobic002G405500 Sobic001G451300 Sobic001G451300 Sobic001G536000--Sobic001G451300 Sobic001G239800 Sobic001G239800 Sobic001G536000--Sobic001G239800 Sobic001G453000 Sobic001G453000 Sobic001G536000--Sobic001G453000 Sobic003G375200 Sobic003G375200 Sobic001G536000--Sobic003G375200 Sobic006G112700 Sobic006G112700 Sobic001G536000--Sobic006G112700 Sobic003G294600 Sobic003G294600 Sobic001G536000--Sobic003G294600 Sobic004G034700--Sobic001G451300 Sobic002G412700 Sobic002G412700 Sobic004G034700--Sobic002G412700 Sobic004G034700--Sobic001G536000 Sobic010G053600 Sobic010G053600 Sobic004G034700--Sobic010G053600 Sobic004G256500 Sobic004G256500 Sobic004G034700--Sobic004G256500 Sobic006G036100 Sobic006G036100 Sobic004G034700--Sobic006G036100 Sobic001G020000 Sobic001G020000 Sobic004G034700--Sobic001G020000 Sobic010G138900 Sobic010G138900 Sobic004G034700--Sobic010G138900 Sobic001G248100 Sobic001G248100 Sobic004G034700--Sobic001G248100 Sobic009G142000--Sobic003G294600 Sobic009G142000--Sobic001G451300 Sobic004G085000 Sobic004G085000 Sobic009G142000--Sobic004G085000 Sobic007G029200 Sobic007G029200 Sobic009G142000--Sobic007G029200 Sobic009G142000--Sobic001G453000 Sobic003G123100 Sobic003G123100 Sobic009G142000--Sobic003G123100 Sobic008G132000 Sobic008G132000 Sobic009G142000--Sobic008G132000 Sobic005G200900 Sobic005G200900 Sobic009G142000--Sobic005G200900 Sobic009G142000--Sobic001G536000 Sobic006G080400 Sobic006G080400 Sobic002G405500--Sobic006G080400 Sobic007G077900 Sobic007G077900 Sobic002G405500--Sobic007G077900 Sobic010G219000 Sobic010G219000 Sobic002G405500--Sobic010G219000 Sobic007G019300 Sobic007G019300 Sobic002G405500--Sobic007G019300 Sobic004G155600 Sobic004G155600 Sobic002G405500--Sobic004G155600 Sobic004G223300 Sobic004G223300 Sobic002G405500--Sobic004G223300 Sobic002G405500--Sobic001G536000 Sobic010G228500 Sobic010G228500 Sobic002G405500--Sobic010G228500 Sobic002G405500--Sobic001G453000 Sobic010G262100 Sobic010G262100 Sobic001G451300--Sobic010G262100 Sobic001G451300--Sobic004G034700 Sobic001G451300--Sobic010G138900 Sobic002G043100 Sobic002G043100 Sobic001G451300--Sobic002G043100 Sobic003G309050 Sobic003G309050 Sobic001G451300--Sobic003G309050 Sobic010G174700 Sobic010G174700 Sobic001G451300--Sobic010G174700 Sobic002G371600 Sobic002G371600 Sobic001G451300--Sobic002G371600 Sobic001G451300--Sobic009G142000 Sobic002G399800 Sobic002G399800 Sobic001G451300--Sobic002G399800 Sobic001G239800--Sobic006G112700 Sobic001G239800--Sobic003G123100 Sobic002G318800 Sobic002G318800 Sobic001G239800--Sobic002G318800 Sobic003G330900 Sobic003G330900 Sobic001G239800--Sobic003G330900 Sobic001G239800--Sobic001G536000 Sobic002G252100 Sobic002G252100 Sobic001G239800--Sobic002G252100 Sobic007G014800 Sobic007G014800 Sobic001G239800--Sobic007G014800 Sobic006G125900 Sobic006G125900 Sobic001G239800--Sobic006G125900 Sobic004G315500 Sobic004G315500 Sobic001G239800--Sobic004G315500 Sobic007G168300 Sobic007G168300 Sobic001G453000--Sobic007G168300 Sobic001G453000--Sobic003G294600 Sobic001G453000--Sobic009G142000 Sobic003G042400 Sobic003G042400 Sobic001G453000--Sobic003G042400 Sobic007G155500 Sobic007G155500 Sobic001G453000--Sobic007G155500 Sobic002G396500 Sobic002G396500 Sobic001G453000--Sobic002G396500 Sobic001G453000--Sobic004G085000 Sobic002G179400 Sobic002G179400 Sobic001G453000--Sobic002G179400 Sobic010G114900 Sobic010G114900 Sobic001G453000--Sobic010G114900 Sobic010G080700 Sobic010G080700 Sobic003G375200--Sobic010G080700 Sobic010G059500 Sobic010G059500 Sobic003G375200--Sobic010G059500 Sobic001G145400 Sobic001G145400 Sobic003G375200--Sobic001G145400 Sobic001G255800 Sobic001G255800 Sobic003G375200--Sobic001G255800 Sobic002G133300 Sobic002G133300 Sobic003G375200--Sobic002G133300 Sobic003G375200--Sobic002G179400 Sobic003G039000 Sobic003G039000 Sobic003G375200--Sobic003G039000 Sobic001G450000 Sobic001G450000 Sobic003G375200--Sobic001G450000 Sobic008G091300 Sobic008G091300 Sobic003G375200--Sobic008G091300 Sobic008G080500 Sobic008G080500 Sobic006G112700--Sobic008G080500 Sobic003G209400 Sobic003G209400 Sobic006G112700--Sobic003G209400 Sobic006G112700--Sobic001G239800 Sobic006G236000 Sobic006G236000 Sobic006G112700--Sobic006G236000 Sobic006G112700--Sobic009G142000 Sobic006G112700--Sobic010G262100 Sobic006G112700--Sobic003G123100 Sobic008G092800 Sobic008G092800 Sobic006G112700--Sobic008G092800 Sobic006G112700--Sobic001G451300 Sobic008G002500 Sobic008G002500 Sobic003G294600--Sobic008G002500 Sobic003G294600--Sobic009G142000 Sobic009G088000 Sobic009G088000 Sobic003G294600--Sobic009G088000 Sobic003G294600--Sobic001G453000 Sobic010G148932 Sobic010G148932 Sobic003G294600--Sobic010G148932 Sobic003G294600--Sobic007G077900 Sobic006G040800 Sobic006G040800 Sobic003G294600--Sobic006G040800 Sobic003G445500 Sobic003G445500 Sobic003G294600--Sobic003G445500 Sobic003G294600--Sobic010G053600
Octagon: transcription factors


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