Gene annotation
Transcriptome id Sobic.003G294600.1
Synonym Sb03g034510, HAT3.1
Functional annotation Homeobox domain containing protein, expressed
UniProt C5XK29
Pfam PF00628 PF00046
Panther DB PTHR12628 PTHR12628:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G19510 : Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
RAP-DB (Rice) LOC_Os06g12400.1 : Homeobox domain containing protein, expressed
MaizeGDB (Corn) Zm00025a045693 , Zm00025a044599 , Zm00025a037959 , Zm00025a040054 , Zm00025a032844 , Zm00025a027570
Brachypodium KQK09722 , PNT70902 , KQK05353 , KQK05356 , KQK05354 , KQK05355 , PNT70907 , PNT70900 , PNT70905 , PNT70906 , PNT70901 , PNT70903 , PNT70908 , PNT70909 , PNT70913 , PNT70912 , PNT70911 , PNT70910 , PNT70904 , PNT70898 , PNT70899
Barley HORVU1Hr1G076380.1 , HORVU1Hr1G076380.3 , HORVU1Hr1G076380.2 , HORVU1Hr1G076380.5 , HORVU1Hr1G076380.4
Wheat TraesCS3B02G307000 , TraesCS3D02G272700 , TraesCS3D02G272700 , TraesCS3D02G272700 , TraesCS3D02G272700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G002500 RCD1, putative, expressed -
2 Sobic.009G142000 plus-3 domain containing protein, putative, expressed -
3 Sobic.009G088000 expressed protein -
4 Sobic.001G453000 no apical meristem protein, putative, expressed -
5 Sobic.010G148932 - -
6 Sobic.007G077900 zinc finger domain, LSD1 subclass family protein, expressed -
7 Sobic.006G040800 expressed protein -
8 Sobic.003G445500 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
9 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8
10 Sobic.003G293200 plus-3 domain containing protein, expressed -
11 Sobic.008G132000 RGH1A, putative, expressed -
12 Sobic.006G036100 expressed protein K11266: MAternally affected uncoordination
13 Sobic.007G031600 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
14 Sobic.003G144300 expressed protein -
15 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
16 Sobic.002G127400 glycosyl hydrolase family 10 protein, putative, expressed -
17 Sobic.007G225100 ZOS8-09 - C2H2 zinc finger protein, expressed -
18 Sobic.001G111600 expressed protein -
19 Sobic.002G405500 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11841: USP10, ubiquitin carboxyl-terminal hydrolase 10
20 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus


Gene co-expression network
sample Sobic003G294600 Sobic003G294600 Sobic008G002500 Sobic008G002500 Sobic003G294600--Sobic008G002500 Sobic009G142000 Sobic009G142000 Sobic003G294600--Sobic009G142000 Sobic009G088000 Sobic009G088000 Sobic003G294600--Sobic009G088000 Sobic001G453000 Sobic001G453000 Sobic003G294600--Sobic001G453000 Sobic010G148932 Sobic010G148932 Sobic003G294600--Sobic010G148932 Sobic007G077900 Sobic007G077900 Sobic003G294600--Sobic007G077900 Sobic006G040800 Sobic006G040800 Sobic003G294600--Sobic006G040800 Sobic003G445500 Sobic003G445500 Sobic003G294600--Sobic003G445500 Sobic010G053600 Sobic010G053600 Sobic003G294600--Sobic010G053600 Sobic008G002500--Sobic006G040800 Sobic001G063700 Sobic001G063700 Sobic008G002500--Sobic001G063700 Sobic001G354600 Sobic001G354600 Sobic008G002500--Sobic001G354600 Sobic003G360400 Sobic003G360400 Sobic008G002500--Sobic003G360400 Sobic008G002500--Sobic009G088000 Sobic003G188400 Sobic003G188400 Sobic008G002500--Sobic003G188400 Sobic001G522600 Sobic001G522600 Sobic008G002500--Sobic001G522600 Sobic001G433800 Sobic001G433800 Sobic008G002500--Sobic001G433800 Sobic004G332400 Sobic004G332400 Sobic008G002500--Sobic004G332400 Sobic009G142000--Sobic003G294600 Sobic001G451300 Sobic001G451300 Sobic009G142000--Sobic001G451300 Sobic004G085000 Sobic004G085000 Sobic009G142000--Sobic004G085000 Sobic007G029200 Sobic007G029200 Sobic009G142000--Sobic007G029200 Sobic009G142000--Sobic001G453000 Sobic003G123100 Sobic003G123100 Sobic009G142000--Sobic003G123100 Sobic008G132000 Sobic008G132000 Sobic009G142000--Sobic008G132000 Sobic005G200900 Sobic005G200900 Sobic009G142000--Sobic005G200900 Sobic001G536000 Sobic001G536000 Sobic009G142000--Sobic001G536000 Sobic009G088000--Sobic008G002500 Sobic009G088000--Sobic006G040800 Sobic002G126300 Sobic002G126300 Sobic009G088000--Sobic002G126300 Sobic009G088000--Sobic003G294600 Sobic003G164200 Sobic003G164200 Sobic009G088000--Sobic003G164200 Sobic009G088000--Sobic005G200900 Sobic002G137200 Sobic002G137200 Sobic009G088000--Sobic002G137200 Sobic004G355800 Sobic004G355800 Sobic009G088000--Sobic004G355800 Sobic010G236400 Sobic010G236400 Sobic009G088000--Sobic010G236400 Sobic007G168300 Sobic007G168300 Sobic001G453000--Sobic007G168300 Sobic001G453000--Sobic003G294600 Sobic001G453000--Sobic009G142000 Sobic003G042400 Sobic003G042400 Sobic001G453000--Sobic003G042400 Sobic007G155500 Sobic007G155500 Sobic001G453000--Sobic007G155500 Sobic002G396500 Sobic002G396500 Sobic001G453000--Sobic002G396500 Sobic001G453000--Sobic004G085000 Sobic002G179400 Sobic002G179400 Sobic001G453000--Sobic002G179400 Sobic010G114900 Sobic010G114900 Sobic001G453000--Sobic010G114900 Sobic003G312100 Sobic003G312100 Sobic010G148932--Sobic003G312100 Sobic002G042600 Sobic002G042600 Sobic010G148932--Sobic002G042600 Sobic003G229500 Sobic003G229500 Sobic010G148932--Sobic003G229500 Sobic002G397500 Sobic002G397500 Sobic010G148932--Sobic002G397500 Sobic008G098900 Sobic008G098900 Sobic010G148932--Sobic008G098900 Sobic001G117200 Sobic001G117200 Sobic010G148932--Sobic001G117200 Sobic001G137000 Sobic001G137000 Sobic010G148932--Sobic001G137000 Sobic007G062800 Sobic007G062800 Sobic010G148932--Sobic007G062800 Sobic001G457900 Sobic001G457900 Sobic010G148932--Sobic001G457900 Sobic007G077900--Sobic003G312100 Sobic007G077900--Sobic010G114900 Sobic007G077900--Sobic010G148932 Sobic001G453400 Sobic001G453400 Sobic007G077900--Sobic001G453400 Sobic002G405500 Sobic002G405500 Sobic007G077900--Sobic002G405500 Sobic007G077900--Sobic001G137000 Sobic007G077900--Sobic003G294600 Sobic010G003400 Sobic010G003400 Sobic007G077900--Sobic010G003400 Sobic007G077900--Sobic002G396500 Sobic006G040800--Sobic008G002500 Sobic006G040800--Sobic001G063700 Sobic006G040800--Sobic004G332400 Sobic006G040800--Sobic009G088000 Sobic006G040800--Sobic003G360400 Sobic008G164600 Sobic008G164600 Sobic006G040800--Sobic008G164600 Sobic006G040800--Sobic001G354600 Sobic006G040800--Sobic001G433800 Sobic007G225100 Sobic007G225100 Sobic006G040800--Sobic007G225100 Sobic001G111600 Sobic001G111600 Sobic003G445500--Sobic001G111600 Sobic001G352900 Sobic001G352900 Sobic003G445500--Sobic001G352900 Sobic009G109200 Sobic009G109200 Sobic003G445500--Sobic009G109200 Sobic005G128400 Sobic005G128400 Sobic003G445500--Sobic005G128400 Sobic003G293200 Sobic003G293200 Sobic003G445500--Sobic003G293200 Sobic005G191900 Sobic005G191900 Sobic003G445500--Sobic005G191900 Sobic003G445500--Sobic002G397500 Sobic003G445500--Sobic003G294600 Sobic003G445500--Sobic010G053600 Sobic010G053600--Sobic001G352900 Sobic002G391600 Sobic002G391600 Sobic010G053600--Sobic002G391600 Sobic010G053600--Sobic009G109200 Sobic001G004400 Sobic001G004400 Sobic010G053600--Sobic001G004400 Sobic007G171100 Sobic007G171100 Sobic010G053600--Sobic007G171100 Sobic004G260100 Sobic004G260100 Sobic010G053600--Sobic004G260100 Sobic006G036100 Sobic006G036100 Sobic010G053600--Sobic006G036100 Sobic004G248600 Sobic004G248600 Sobic010G053600--Sobic004G248600 Sobic004G242400 Sobic004G242400 Sobic010G053600--Sobic004G242400
Octagon: transcription factors


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