Gene annotation
Transcriptome id Sobic.007G077900.1,Sobic.007G077900.3,Sobic.007G077900.2
Synonym EMB1135
Functional annotation zinc finger domain, LSD1 subclass family protein, expressed
UniProt A0A1B6PGA3 , A0A1B6PGA7 , A0A1Z5R8J6
Pfam PF00628 PF13871 PF13872
Panther DB PTHR12706 PTHR12706:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT1G79350 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os08g12680.1 : zinc finger domain, LSD1 subclass family protein, expressed
MaizeGDB (Corn) Zm00025a056991 , Zm00025a054893
Brachypodium KQJ84484 , KQJ95604
Barley HORVU7Hr1G095820.1 , HORVU7Hr1G095820.3 , HORVU7Hr1G095820.2 , HORVU7Hr1G095820.5 , HORVU7Hr1G095820.4 , HORVU2Hr1G100080.7 , HORVU2Hr1G100080.6 , HORVU2Hr1G100080.5 , HORVU2Hr1G100080.4 , HORVU2Hr1G100080.3 , HORVU2Hr1G100080.2 , HORVU2Hr1G100080.1 , HORVU2Hr1G100080.9 , HORVU2Hr1G100080.8 , HORVU2Hr1G100080.20 , HORVU2Hr1G100080.19 , HORVU2Hr1G100080.18 , HORVU2Hr1G100080.17 , HORVU2Hr1G100080.16 , HORVU2Hr1G100080.15 , HORVU2Hr1G100080.14 , HORVU2Hr1G100080.13 , HORVU2Hr1G100080.12 , HORVU2Hr1G100080.11 , HORVU2Hr1G100080.10
Wheat TraesCS2A02G428300 , TraesCS2A02G428300 , TraesCS2A02G428300 , TraesCS2A02G428300 , TraesCS2A02G428300 , TraesCS2A02G428300 , TraesCS2A02G428300 , TraesCS7D02G403900 , TraesCS2A02G428300 , TraesCS2A02G428300 , TraesCS2D02G426400 , TraesCS2D02G426400 , TraesCS2D02G426400 , TraesCS2D02G426400 , TraesCS2D02G426400 , TraesCS2D02G426400 , TraesCS2D02G426400 , TraesCS7B02G310100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G312100 guanine nucleotide exchange family protein, putative, expressed -
2 Sobic.010G114900 expressed protein -
3 Sobic.010G148932 - -
4 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
5 Sobic.002G405500 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11841: USP10, ubiquitin carboxyl-terminal hydrolase 10
6 Sobic.001G137000 aberrant pollen transmission 1, putative, expressed -
7 Sobic.003G294600 Homeobox domain containing protein, expressed -
8 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
9 Sobic.002G396500 FAT domain-containing protein, putative, expressed K08874: transformation/transcription domain-associated protein
10 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
11 Sobic.007G019300 adaptin, putative, expressed K12397: AP-3 complex subunit beta
12 Sobic.004G256500 WD domain, G-beta repeat domain containing protein, expressed K12616: enhancer of mRNA-decapping protein 4
13 Sobic.007G098500 BIG, putative, expressed K10691: UBR4, E3 ubiquitin-protein ligase UBR4
14 Sobic.004G135400 expressed protein -
15 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
16 Sobic.001G004400 - K14290: XPO1, exportin-1
17 Sobic.004G277200 GPI transamidase subunit PIG-U domain containing protein, expressed K05293: GPI-anchor transamidase subunit U
18 Sobic.001G191700 expressed protein -
19 Sobic.001G453000 no apical meristem protein, putative, expressed -
20 Sobic.004G005100 peptidase family C78 domain containing protein, expressed -


Gene co-expression network
sample Sobic007G077900 Sobic007G077900 Sobic003G312100 Sobic003G312100 Sobic007G077900--Sobic003G312100 Sobic010G114900 Sobic010G114900 Sobic007G077900--Sobic010G114900 Sobic010G148932 Sobic010G148932 Sobic007G077900--Sobic010G148932 Sobic001G453400 Sobic001G453400 Sobic007G077900--Sobic001G453400 Sobic002G405500 Sobic002G405500 Sobic007G077900--Sobic002G405500 Sobic001G137000 Sobic001G137000 Sobic007G077900--Sobic001G137000 Sobic003G294600 Sobic003G294600 Sobic007G077900--Sobic003G294600 Sobic010G003400 Sobic010G003400 Sobic007G077900--Sobic010G003400 Sobic002G396500 Sobic002G396500 Sobic007G077900--Sobic002G396500 Sobic003G312100--Sobic010G148932 Sobic003G233400 Sobic003G233400 Sobic003G312100--Sobic003G233400 Sobic003G312100--Sobic001G137000 Sobic007G019300 Sobic007G019300 Sobic003G312100--Sobic007G019300 Sobic003G072200 Sobic003G072200 Sobic003G312100--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic003G312100--Sobic002G397500 Sobic001G004400 Sobic001G004400 Sobic003G312100--Sobic001G004400 Sobic004G248600 Sobic004G248600 Sobic003G312100--Sobic004G248600 Sobic003G312100--Sobic002G396500 Sobic010G114900--Sobic007G077900 Sobic004G085000 Sobic004G085000 Sobic010G114900--Sobic004G085000 Sobic010G114900--Sobic001G453400 Sobic010G114900--Sobic003G312100 Sobic007G168300 Sobic007G168300 Sobic010G114900--Sobic007G168300 Sobic010G114900--Sobic010G003400 Sobic007G155500 Sobic007G155500 Sobic010G114900--Sobic007G155500 Sobic005G010900 Sobic005G010900 Sobic010G114900--Sobic005G010900 Sobic001G052400 Sobic001G052400 Sobic010G114900--Sobic001G052400 Sobic010G148932--Sobic003G312100 Sobic002G042600 Sobic002G042600 Sobic010G148932--Sobic002G042600 Sobic003G229500 Sobic003G229500 Sobic010G148932--Sobic003G229500 Sobic010G148932--Sobic002G397500 Sobic008G098900 Sobic008G098900 Sobic010G148932--Sobic008G098900 Sobic001G117200 Sobic001G117200 Sobic010G148932--Sobic001G117200 Sobic010G148932--Sobic001G137000 Sobic007G062800 Sobic007G062800 Sobic010G148932--Sobic007G062800 Sobic001G457900 Sobic001G457900 Sobic010G148932--Sobic001G457900 Sobic001G453400--Sobic010G003400 Sobic006G086600 Sobic006G086600 Sobic001G453400--Sobic006G086600 Sobic001G376900 Sobic001G376900 Sobic001G453400--Sobic001G376900 Sobic003G156500 Sobic003G156500 Sobic001G453400--Sobic003G156500 Sobic001G453400--Sobic001G052400 Sobic001G089600 Sobic001G089600 Sobic001G453400--Sobic001G089600 Sobic006G125900 Sobic006G125900 Sobic001G453400--Sobic006G125900 Sobic007G106700 Sobic007G106700 Sobic001G453400--Sobic007G106700 Sobic001G453400--Sobic010G114900 Sobic006G080400 Sobic006G080400 Sobic002G405500--Sobic006G080400 Sobic002G405500--Sobic007G077900 Sobic010G219000 Sobic010G219000 Sobic002G405500--Sobic010G219000 Sobic002G405500--Sobic007G019300 Sobic004G155600 Sobic004G155600 Sobic002G405500--Sobic004G155600 Sobic004G223300 Sobic004G223300 Sobic002G405500--Sobic004G223300 Sobic001G536000 Sobic001G536000 Sobic002G405500--Sobic001G536000 Sobic010G228500 Sobic010G228500 Sobic002G405500--Sobic010G228500 Sobic001G453000 Sobic001G453000 Sobic002G405500--Sobic001G453000 Sobic008G092600 Sobic008G092600 Sobic001G137000--Sobic008G092600 Sobic007G098500 Sobic007G098500 Sobic001G137000--Sobic007G098500 Sobic001G137000--Sobic003G233400 Sobic001G137000--Sobic003G312100 Sobic001G137000--Sobic001G117200 Sobic001G137000--Sobic002G396500 Sobic001G050600 Sobic001G050600 Sobic001G137000--Sobic001G050600 Sobic001G137000--Sobic008G098900 Sobic008G099800 Sobic008G099800 Sobic001G137000--Sobic008G099800 Sobic008G002500 Sobic008G002500 Sobic003G294600--Sobic008G002500 Sobic009G142000 Sobic009G142000 Sobic003G294600--Sobic009G142000 Sobic009G088000 Sobic009G088000 Sobic003G294600--Sobic009G088000 Sobic003G294600--Sobic001G453000 Sobic003G294600--Sobic010G148932 Sobic003G294600--Sobic007G077900 Sobic006G040800 Sobic006G040800 Sobic003G294600--Sobic006G040800 Sobic003G445500 Sobic003G445500 Sobic003G294600--Sobic003G445500 Sobic010G053600 Sobic010G053600 Sobic003G294600--Sobic010G053600 Sobic010G003400--Sobic006G086600 Sobic010G003400--Sobic001G453400 Sobic010G003400--Sobic001G052400 Sobic009G101200 Sobic009G101200 Sobic010G003400--Sobic009G101200 Sobic003G260400 Sobic003G260400 Sobic010G003400--Sobic003G260400 Sobic010G003400--Sobic001G004400 Sobic004G320500 Sobic004G320500 Sobic010G003400--Sobic004G320500 Sobic010G003400--Sobic001G089600 Sobic004G030800 Sobic004G030800 Sobic010G003400--Sobic004G030800 Sobic002G396500--Sobic007G098500 Sobic010G001100 Sobic010G001100 Sobic002G396500--Sobic010G001100 Sobic010G105200 Sobic010G105200 Sobic002G396500--Sobic010G105200 Sobic002G396500--Sobic003G072200 Sobic002G396500--Sobic008G092600 Sobic002G396500--Sobic001G137000 Sobic002G396500--Sobic003G233400 Sobic002G396500--Sobic003G312100 Sobic009G109200 Sobic009G109200 Sobic002G396500--Sobic009G109200
Octagon: transcription factors


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