Gene annotation
Transcriptome id Sobic.004G256500.1
Synonym VCS, Sb04g029510
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5XZS6
Pfam PF16529
Panther DB PTHR15598 PTHR15598:SF6
NCBI CDD -
KEGG Orthology K12616; enhancer of mRNA-decapping protein 4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G13290 : varicose-related
RAP-DB (Rice) LOC_Os02g49090.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a036622 , Zm00025a021864 , Zm00025a043008 , Zm00025a032553
Brachypodium KQK01533 , KQK18530 , PNT76022 , PNT76024 , PNT76021 , PNT76023 , PNT76025 , PNT76026
Barley HORVU7Hr1G045240.1 , HORVU7Hr1G045240.2 , HORVU7Hr1G045240.3 , HORVU7Hr1G045240.4 , HORVU7Hr1G045240.5 , HORVU7Hr1G045240.6 , HORVU7Hr1G045240.7 , HORVU7Hr1G045240.8 , HORVU7Hr1G045240.9 , HORVU6Hr1G071910.8 , HORVU6Hr1G071910.9 , HORVU6Hr1G071910.6 , HORVU6Hr1G071910.7 , HORVU6Hr1G071910.4 , HORVU6Hr1G071910.5 , HORVU6Hr1G071910.2 , HORVU6Hr1G071910.3 , HORVU6Hr1G071910.1 , HORVU6Hr1G071910.10 , HORVU6Hr1G071910.11 , HORVU6Hr1G071910.12 , HORVU6Hr1G071910.13 , HORVU7Hr1G045240.10 , HORVU6Hr1G071910.14
Wheat TraesCS7B02G127000 , TraesCS7B02G127000 , TraesCS7B02G127000 , TraesCS7B02G127000 , TraesCS7B02G127000 , TraesCS7D02G221700 , TraesCS7D02G221700 , TraesCS6B02G314800 , TraesCS6B02G314800 , TraesCS6B02G314800 , TraesCS7A02G220400 , TraesCS7A02G220400 , TraesCS7A02G220400 , TraesCS7A02G220400 , TraesCS7A02G220400 , TraesCS6A02G286100 , TraesCS6A02G286100 , TraesCS6A02G286100 , TraesCS6A02G286100 , TraesCS6D02G266500 , TraesCS6D02G266500
Populus PNS97090 , PNS97091 , PNS97092


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
2 Sobic.009G234700 protein of unknown function DUF1296 domain containing protein, expressed -
3 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
4 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
5 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
6 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
7 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
8 Sobic.001G287500 heat shock protein DnaJ, putative, expressed K09533: DnaJ homolog subfamily C member 13
9 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
10 Sobic.008G054600 splicing factor, putative, expressed -
11 Sobic.003G233400 expressed protein -
12 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
13 Sobic.001G004400 - K14290: XPO1, exportin-1
14 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
15 Sobic.008G124800 expressed protein -
16 Sobic.009G084900 expressed protein -
17 Sobic.002G179400 DNA binding protein, putative, expressed -
18 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
19 Sobic.001G058200 PPR repeat domain containing protein, putative, expressed -
20 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase


Gene co-expression network
sample Sobic004G256500 Sobic004G256500 Sobic004G131300 Sobic004G131300 Sobic004G256500--Sobic004G131300 Sobic009G234700 Sobic009G234700 Sobic004G256500--Sobic009G234700 Sobic001G145400 Sobic001G145400 Sobic004G256500--Sobic001G145400 Sobic002G133300 Sobic002G133300 Sobic004G256500--Sobic002G133300 Sobic002G142900 Sobic002G142900 Sobic004G256500--Sobic002G142900 Sobic004G053500 Sobic004G053500 Sobic004G256500--Sobic004G053500 Sobic002G371700 Sobic002G371700 Sobic004G256500--Sobic002G371700 Sobic001G287500 Sobic001G287500 Sobic004G256500--Sobic001G287500 Sobic001G087600 Sobic001G087600 Sobic004G256500--Sobic001G087600 Sobic004G131300--Sobic002G133300 Sobic004G131300--Sobic002G142900 Sobic005G172500 Sobic005G172500 Sobic004G131300--Sobic005G172500 Sobic009G084900 Sobic009G084900 Sobic004G131300--Sobic009G084900 Sobic004G131300--Sobic004G256500 Sobic010G059500 Sobic010G059500 Sobic004G131300--Sobic010G059500 Sobic007G054800 Sobic007G054800 Sobic004G131300--Sobic007G054800 Sobic006G136400 Sobic006G136400 Sobic004G131300--Sobic006G136400 Sobic002G256700 Sobic002G256700 Sobic004G131300--Sobic002G256700 Sobic009G234700--Sobic004G256500 Sobic009G234700--Sobic004G131300 Sobic009G234700--Sobic001G145400 Sobic009G234700--Sobic004G053500 Sobic006G002800 Sobic006G002800 Sobic009G234700--Sobic006G002800 Sobic009G234700--Sobic002G371700 Sobic003G046300 Sobic003G046300 Sobic009G234700--Sobic003G046300 Sobic009G234700--Sobic005G172500 Sobic001G455800 Sobic001G455800 Sobic009G234700--Sobic001G455800 Sobic006G086600 Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic010G007100 Sobic010G007100 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic004G276400 Sobic004G276400 Sobic002G133300--Sobic004G276400 Sobic001G433800 Sobic001G433800 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic001G289800 Sobic001G289800 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic002G133300--Sobic004G131300 Sobic001G194200 Sobic001G194200 Sobic002G133300--Sobic001G194200 Sobic001G493700 Sobic001G493700 Sobic002G133300--Sobic001G493700 Sobic002G142900--Sobic004G131300 Sobic001G263600 Sobic001G263600 Sobic002G142900--Sobic001G263600 Sobic002G142900--Sobic002G133300 Sobic003G195000 Sobic003G195000 Sobic002G142900--Sobic003G195000 Sobic002G142900--Sobic007G054800 Sobic005G162500 Sobic005G162500 Sobic002G142900--Sobic005G162500 Sobic003G104000 Sobic003G104000 Sobic002G142900--Sobic003G104000 Sobic002G142900--Sobic002G256700 Sobic002G335600 Sobic002G335600 Sobic002G142900--Sobic002G335600 Sobic002G401500 Sobic002G401500 Sobic004G053500--Sobic002G401500 Sobic002G179400 Sobic002G179400 Sobic004G053500--Sobic002G179400 Sobic004G053500--Sobic002G335600 Sobic006G166200 Sobic006G166200 Sobic004G053500--Sobic006G166200 Sobic006G032300 Sobic006G032300 Sobic004G053500--Sobic006G032300 Sobic005G133800 Sobic005G133800 Sobic004G053500--Sobic005G133800 Sobic002G340900 Sobic002G340900 Sobic004G053500--Sobic002G340900 Sobic003G296900 Sobic003G296900 Sobic004G053500--Sobic003G296900 Sobic004G053500--Sobic005G162500 Sobic008G103300 Sobic008G103300 Sobic002G371700--Sobic008G103300 Sobic002G371700--Sobic004G053500 Sobic002G371700--Sobic010G059500 Sobic002G371700--Sobic002G142900 Sobic002G371700--Sobic004G131300 Sobic002G371700--Sobic002G401500 Sobic005G110499 Sobic005G110499 Sobic002G371700--Sobic005G110499 Sobic002G371700--Sobic001G087600 Sobic003G363700 Sobic003G363700 Sobic002G371700--Sobic003G363700 Sobic003G233400 Sobic003G233400 Sobic001G287500--Sobic003G233400 Sobic001G287500--Sobic003G072200 Sobic007G098500 Sobic007G098500 Sobic001G287500--Sobic007G098500 Sobic004G051200 Sobic004G051200 Sobic001G287500--Sobic004G051200 Sobic008G092600 Sobic008G092600 Sobic001G287500--Sobic008G092600 Sobic001G347500 Sobic001G347500 Sobic001G287500--Sobic001G347500 Sobic001G426600 Sobic001G426600 Sobic001G287500--Sobic001G426600 Sobic004G040500 Sobic004G040500 Sobic001G287500--Sobic004G040500 Sobic004G204100 Sobic004G204100 Sobic001G287500--Sobic004G204100 Sobic001G151100 Sobic001G151100 Sobic001G087600--Sobic001G151100 Sobic001G461400 Sobic001G461400 Sobic001G087600--Sobic001G461400 Sobic001G020000 Sobic001G020000 Sobic001G087600--Sobic001G020000 Sobic002G145800 Sobic002G145800 Sobic001G087600--Sobic002G145800 Sobic002G154000 Sobic002G154000 Sobic001G087600--Sobic002G154000 Sobic003G416700 Sobic003G416700 Sobic001G087600--Sobic003G416700 Sobic002G430300 Sobic002G430300 Sobic001G087600--Sobic002G430300 Sobic005G167700 Sobic005G167700 Sobic001G087600--Sobic005G167700 Sobic001G087600--Sobic002G371700
Octagon: transcription factors


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