Gene annotation
Transcriptome id Sobic.001G087600.3,Sobic.001G087600.1,Sobic.001G087600.2
Synonym EMF2, VEF2, CYR1, AtEMF2
Functional annotation ZOS9-03 - C2H2 zinc finger protein, expressed
UniProt A0A1Z5S4V0 , A0A1B6QHZ0 , A0A1Z5S4Y3
Pfam PF09733
Panther DB PTHR22597
NCBI CDD KOG2350; Zn-finger protein joined to JAZF1 (predicted suppressor)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G51230 : VEFS-Box of polycomb protein
RAP-DB (Rice) LOC_Os09g13630.1 : ZOS9-03 - C2H2 zinc finger protein, expressed
MaizeGDB (Corn) Zm00025a046388 , Zm00025a008180
Brachypodium KQJ93183 , KQJ93182 , KQJ93181 , KQJ93180 , KQJ93185 , KQJ93184 , KQJ93178 , KQJ93179 , KQJ87520 , PNT63119 , PNT63118
Barley HORVU2Hr1G000010.17 , HORVU2Hr1G000010.16 , HORVU2Hr1G000010.15 , HORVU2Hr1G000010.14 , HORVU2Hr1G000010.13 , HORVU2Hr1G000010.12 , HORVU2Hr1G000010.11 , HORVU2Hr1G000010.10 , HORVU5Hr1G054730.21 , HORVU5Hr1G054730.20 , HORVU2Hr1G000010.19 , HORVU2Hr1G000010.18 , HORVU2Hr1G000010.39 , HORVU2Hr1G000010.38 , HORVU2Hr1G000010.31 , HORVU2Hr1G000010.30 , HORVU2Hr1G000010.33 , HORVU2Hr1G000010.32 , HORVU2Hr1G000010.35 , HORVU2Hr1G000010.34 , HORVU2Hr1G000010.37 , HORVU2Hr1G000010.36 , HORVU2Hr1G000010.28 , HORVU2Hr1G000010.29 , HORVU2Hr1G000010.26 , HORVU2Hr1G000010.27 , HORVU2Hr1G000010.24 , HORVU2Hr1G000010.22 , HORVU2Hr1G000010.23 , HORVU2Hr1G000010.20 , HORVU2Hr1G000010.21 , HORVU5Hr1G054730.12 , HORVU5Hr1G054730.13 , HORVU5Hr1G054730.10 , HORVU5Hr1G054730.11 , HORVU5Hr1G054730.17 , HORVU5Hr1G054730.14 , HORVU5Hr1G054730.22 , HORVU5Hr1G054730.18 , HORVU5Hr1G054730.19 , HORVU2Hr1G000010.40 , HORVU2Hr1G000010.41 , HORVU2Hr1G000010.42 , HORVU2Hr1G000010.43 , HORVU2Hr1G000010.44 , HORVU2Hr1G000010.45 , HORVU5Hr1G054730.8 , HORVU5Hr1G054730.9 , HORVU5Hr1G054730.1 , HORVU5Hr1G054730.2 , HORVU5Hr1G054730.3 , HORVU5Hr1G054730.4 , HORVU5Hr1G054730.5 , HORVU5Hr1G054730.6 , HORVU5Hr1G054730.7 , HORVU5Hr1G054730.16 , HORVU2Hr1G000010.25 , HORVU2Hr1G000010.9 , HORVU2Hr1G000010.8 , HORVU2Hr1G000010.7 , HORVU2Hr1G000010.6 , HORVU2Hr1G000010.5 , HORVU2Hr1G000010.4 , HORVU2Hr1G000010.3 , HORVU2Hr1G000010.2 , HORVU2Hr1G000010.1 , HORVU5Hr1G054730.15
Wheat TraesCSU02G075500 , TraesCS5B02G177400 , TraesCSU02G194400 , TraesCSU02G224600 , TraesCS5D02G184200 , TraesCS5D02G184200 , TraesCS5A02G179600 , TraesCS2D02G000600 , TraesCS5B02G177400 , TraesCS2D02G000600 , TraesCS2D02G000600 , TraesCS5B02G177400 , TraesCS5B02G177400 , TraesCS2B02G020400 , TraesCS2B02G020400 , TraesCS2B02G020400 , TraesCS2B02G023900 , TraesCS2A02G000100 , TraesCS2A02G000100 , TraesCS2B02G023900 , TraesCS3B02G073800 , TraesCS2A02G002500 , TraesCS2A02G002500 , TraesCS2D02G000600 , TraesCS2A02G002500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G087600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G151100 CCR4-NOT transcription factor, putative, expressed K12580: CNOT3, CCR4-NOT transcription complex subunit 3
2 Sobic.001G461400 pre-mRNA-processing factor 39, putative, expressed K13217: PRPF39, pre-mRNA-processing factor 39
3 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
4 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
5 Sobic.002G154000 EDM2, putative, expressed -
6 Sobic.003G416700 homeobox domain containing protein, expressed -
7 Sobic.002G430300 HEAT repeat family protein, putative, expressed K06100: symplekin
8 Sobic.005G167700 protein phosphatase 2C, putative, expressed -
9 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
10 Sobic.010G185400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
11 Sobic.003G312700 glycosyl hydrolase family 47 domain contain protein, expressed K10085: ER degradation enhancer, mannosidase alpha-like 2
12 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
13 Sobic.004G256500 WD domain, G-beta repeat domain containing protein, expressed K12616: enhancer of mRNA-decapping protein 4
14 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
15 Sobic.001G035200 ThiF family domain containing protein, putative, expressed K04532: NAE1, amyloid beta precursor protein binding protein 1
16 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
17 Sobic.001G058200 PPR repeat domain containing protein, putative, expressed -
18 Sobic.004G129300 chromatin modification-related protein EAF3, putative, expressed K11339: MORF4L1, MRG15, mortality factor 4-like protein 1
19 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
20 Sobic.003G152400 WD domain containing protein, putative, expressed K17601: WD repeat-containing protein 81


Gene co-expression network
sample Sobic001G087600 Sobic001G087600 Sobic001G151100 Sobic001G151100 Sobic001G087600--Sobic001G151100 Sobic001G461400 Sobic001G461400 Sobic001G087600--Sobic001G461400 Sobic001G020000 Sobic001G020000 Sobic001G087600--Sobic001G020000 Sobic002G145800 Sobic002G145800 Sobic001G087600--Sobic002G145800 Sobic002G154000 Sobic002G154000 Sobic001G087600--Sobic002G154000 Sobic003G416700 Sobic003G416700 Sobic001G087600--Sobic003G416700 Sobic002G430300 Sobic002G430300 Sobic001G087600--Sobic002G430300 Sobic005G167700 Sobic005G167700 Sobic001G087600--Sobic005G167700 Sobic002G371700 Sobic002G371700 Sobic001G087600--Sobic002G371700 Sobic001G058200 Sobic001G058200 Sobic001G151100--Sobic001G058200 Sobic001G433800 Sobic001G433800 Sobic001G151100--Sobic001G433800 Sobic001G151100--Sobic005G167700 Sobic001G151100--Sobic001G087600 Sobic002G308700 Sobic002G308700 Sobic001G151100--Sobic002G308700 Sobic005G162500 Sobic005G162500 Sobic001G151100--Sobic005G162500 Sobic002G133300 Sobic002G133300 Sobic001G151100--Sobic002G133300 Sobic001G542400 Sobic001G542400 Sobic001G151100--Sobic001G542400 Sobic004G248600 Sobic004G248600 Sobic001G151100--Sobic004G248600 Sobic001G063700 Sobic001G063700 Sobic001G461400--Sobic001G063700 Sobic001G461400--Sobic003G416700 Sobic002G264200 Sobic002G264200 Sobic001G461400--Sobic002G264200 Sobic001G461400--Sobic002G154000 Sobic001G461400--Sobic001G087600 Sobic005G200800 Sobic005G200800 Sobic001G461400--Sobic005G200800 Sobic003G360400 Sobic003G360400 Sobic001G461400--Sobic003G360400 Sobic002G071500 Sobic002G071500 Sobic001G461400--Sobic002G071500 Sobic010G112100 Sobic010G112100 Sobic001G461400--Sobic010G112100 Sobic001G219600 Sobic001G219600 Sobic001G020000--Sobic001G219600 Sobic001G020000--Sobic001G433800 Sobic002G317200 Sobic002G317200 Sobic001G020000--Sobic002G317200 Sobic001G354600 Sobic001G354600 Sobic001G020000--Sobic001G354600 Sobic001G020000--Sobic001G087600 Sobic002G425500 Sobic002G425500 Sobic001G020000--Sobic002G425500 Sobic003G095900 Sobic003G095900 Sobic001G020000--Sobic003G095900 Sobic001G352900 Sobic001G352900 Sobic001G020000--Sobic001G352900 Sobic004G124300 Sobic004G124300 Sobic001G020000--Sobic004G124300 Sobic006G269800 Sobic006G269800 Sobic002G145800--Sobic006G269800 Sobic002G145800--Sobic003G416700 Sobic007G183300 Sobic007G183300 Sobic002G145800--Sobic007G183300 Sobic002G145800--Sobic001G087600 Sobic001G051700 Sobic001G051700 Sobic002G145800--Sobic001G051700 Sobic003G062300 Sobic003G062300 Sobic002G145800--Sobic003G062300 Sobic008G147200 Sobic008G147200 Sobic002G145800--Sobic008G147200 Sobic001G023000 Sobic001G023000 Sobic002G145800--Sobic001G023000 Sobic010G186600 Sobic010G186600 Sobic002G145800--Sobic010G186600 Sobic002G154000--Sobic003G360400 Sobic002G154000--Sobic003G416700 Sobic002G154000--Sobic010G112100 Sobic002G154000--Sobic001G063700 Sobic010G001100 Sobic010G001100 Sobic002G154000--Sobic010G001100 Sobic002G154000--Sobic001G461400 Sobic002G154000--Sobic001G433800 Sobic004G048800 Sobic004G048800 Sobic002G154000--Sobic004G048800 Sobic007G063000 Sobic007G063000 Sobic002G154000--Sobic007G063000 Sobic003G416700--Sobic002G154000 Sobic003G416700--Sobic002G264200 Sobic003G416700--Sobic001G461400 Sobic007G183900 Sobic007G183900 Sobic003G416700--Sobic007G183900 Sobic003G416700--Sobic001G051700 Sobic003G416700--Sobic003G360400 Sobic009G119000 Sobic009G119000 Sobic003G416700--Sobic009G119000 Sobic003G416700--Sobic001G063700 Sobic010G275500 Sobic010G275500 Sobic003G416700--Sobic010G275500 Sobic004G141800 Sobic004G141800 Sobic002G430300--Sobic004G141800 Sobic001G393700 Sobic001G393700 Sobic002G430300--Sobic001G393700 Sobic003G405500 Sobic003G405500 Sobic002G430300--Sobic003G405500 Sobic003G152400 Sobic003G152400 Sobic002G430300--Sobic003G152400 Sobic001G145400 Sobic001G145400 Sobic002G430300--Sobic001G145400 Sobic005G133800 Sobic005G133800 Sobic002G430300--Sobic005G133800 Sobic002G430300--Sobic001G087600 Sobic006G224800 Sobic006G224800 Sobic002G430300--Sobic006G224800 Sobic002G430300--Sobic002G145800 Sobic010G123600 Sobic010G123600 Sobic005G167700--Sobic010G123600 Sobic003G441900 Sobic003G441900 Sobic005G167700--Sobic003G441900 Sobic005G167700--Sobic001G433800 Sobic003G168100 Sobic003G168100 Sobic005G167700--Sobic003G168100 Sobic005G167700--Sobic001G151100 Sobic004G158400 Sobic004G158400 Sobic005G167700--Sobic004G158400 Sobic003G188400 Sobic003G188400 Sobic005G167700--Sobic003G188400 Sobic010G126000 Sobic010G126000 Sobic005G167700--Sobic010G126000 Sobic005G167700--Sobic003G360400 Sobic008G103300 Sobic008G103300 Sobic002G371700--Sobic008G103300 Sobic004G053500 Sobic004G053500 Sobic002G371700--Sobic004G053500 Sobic010G059500 Sobic010G059500 Sobic002G371700--Sobic010G059500 Sobic002G142900 Sobic002G142900 Sobic002G371700--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic002G371700--Sobic004G131300 Sobic002G401500 Sobic002G401500 Sobic002G371700--Sobic002G401500 Sobic005G110499 Sobic005G110499 Sobic002G371700--Sobic005G110499 Sobic002G371700--Sobic001G087600 Sobic003G363700 Sobic003G363700 Sobic002G371700--Sobic003G363700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.