Gene annotation
Transcriptome id Sobic.001G461400.1
Synonym Sb01g043300, PRP39
Functional annotation pre-mRNA-processing factor 39, putative, expressed
UniProt C5WTP4
Pfam -
Panther DB PTHR17204 PTHR17204:SF5
NCBI CDD KOG1258; mRNA processing protein
KEGG Orthology K13217; PRPF39, pre-mRNA-processing factor 39
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G04080 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g11200.1 : pre-mRNA-processing factor 39, putative, expressed
MaizeGDB (Corn) Zm00025a053116 , Zm00025a001083
Brachypodium KQK22980
Barley HORVU6Hr1G005730.19 , HORVU6Hr1G005730.18 , HORVU6Hr1G005730.15 , HORVU6Hr1G005730.14 , HORVU6Hr1G005730.17 , HORVU6Hr1G005730.16 , HORVU6Hr1G005730.11 , HORVU6Hr1G005730.10 , HORVU6Hr1G005730.13 , HORVU6Hr1G005730.12 , HORVU6Hr1G005730.9 , HORVU6Hr1G005730.8 , HORVU6Hr1G005730.1 , HORVU6Hr1G005730.3 , HORVU6Hr1G005730.2 , HORVU6Hr1G005730.5 , HORVU6Hr1G005730.4 , HORVU6Hr1G005730.7 , HORVU6Hr1G005730.6 , HORVU6Hr1G005730.20
Wheat TraesCS6A02G032600 , TraesCS6A02G032600 , TraesCS6D02G037400 , TraesCS6D02G037400 , TraesCS6B02G045800 , TraesCS6B02G045800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G063700 expressed protein -
2 Sobic.003G416700 homeobox domain containing protein, expressed -
3 Sobic.002G264200 RNA recognition motif containing protein, expressed -
4 Sobic.002G154000 EDM2, putative, expressed -
5 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
6 Sobic.005G200800 homeobox domain containing protein, expressed -
7 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
8 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
9 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
10 Sobic.004G048800 - K12599: SKI2, antiviral helicase SKI2
11 Sobic.006G118700 MYB family transcription factor, putative, expressed -
12 Sobic.007G183900 ubiquitin family protein, putative, expressed -
13 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
14 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
15 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
16 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
17 Sobic.006G080400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11851: ubiquitin carboxyl-terminal hydrolase 30
18 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
19 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
20 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus


Gene co-expression network
sample Sobic001G461400 Sobic001G461400 Sobic001G063700 Sobic001G063700 Sobic001G461400--Sobic001G063700 Sobic003G416700 Sobic003G416700 Sobic001G461400--Sobic003G416700 Sobic002G264200 Sobic002G264200 Sobic001G461400--Sobic002G264200 Sobic002G154000 Sobic002G154000 Sobic001G461400--Sobic002G154000 Sobic001G087600 Sobic001G087600 Sobic001G461400--Sobic001G087600 Sobic005G200800 Sobic005G200800 Sobic001G461400--Sobic005G200800 Sobic003G360400 Sobic003G360400 Sobic001G461400--Sobic003G360400 Sobic002G071500 Sobic002G071500 Sobic001G461400--Sobic002G071500 Sobic010G112100 Sobic010G112100 Sobic001G461400--Sobic010G112100 Sobic001G063700--Sobic001G461400 Sobic001G063700--Sobic003G360400 Sobic001G063700--Sobic010G112100 Sobic001G063700--Sobic002G154000 Sobic003G188400 Sobic003G188400 Sobic001G063700--Sobic003G188400 Sobic001G433800 Sobic001G433800 Sobic001G063700--Sobic001G433800 Sobic009G256300 Sobic009G256300 Sobic001G063700--Sobic009G256300 Sobic008G002500 Sobic008G002500 Sobic001G063700--Sobic008G002500 Sobic001G354600 Sobic001G354600 Sobic001G063700--Sobic001G354600 Sobic003G416700--Sobic002G154000 Sobic003G416700--Sobic002G264200 Sobic003G416700--Sobic001G461400 Sobic007G183900 Sobic007G183900 Sobic003G416700--Sobic007G183900 Sobic001G051700 Sobic001G051700 Sobic003G416700--Sobic001G051700 Sobic003G416700--Sobic003G360400 Sobic009G119000 Sobic009G119000 Sobic003G416700--Sobic009G119000 Sobic003G416700--Sobic001G063700 Sobic010G275500 Sobic010G275500 Sobic003G416700--Sobic010G275500 Sobic010G069100 Sobic010G069100 Sobic002G264200--Sobic010G069100 Sobic002G264200--Sobic003G416700 Sobic002G264200--Sobic001G461400 Sobic008G153000 Sobic008G153000 Sobic002G264200--Sobic008G153000 Sobic010G236400 Sobic010G236400 Sobic002G264200--Sobic010G236400 Sobic002G264200--Sobic002G071500 Sobic007G065400 Sobic007G065400 Sobic002G264200--Sobic007G065400 Sobic002G153700 Sobic002G153700 Sobic002G264200--Sobic002G153700 Sobic006G118700 Sobic006G118700 Sobic002G264200--Sobic006G118700 Sobic002G154000--Sobic003G360400 Sobic002G154000--Sobic003G416700 Sobic002G154000--Sobic010G112100 Sobic002G154000--Sobic001G063700 Sobic010G001100 Sobic010G001100 Sobic002G154000--Sobic010G001100 Sobic002G154000--Sobic001G461400 Sobic002G154000--Sobic001G433800 Sobic004G048800 Sobic004G048800 Sobic002G154000--Sobic004G048800 Sobic007G063000 Sobic007G063000 Sobic002G154000--Sobic007G063000 Sobic001G151100 Sobic001G151100 Sobic001G087600--Sobic001G151100 Sobic001G087600--Sobic001G461400 Sobic001G020000 Sobic001G020000 Sobic001G087600--Sobic001G020000 Sobic002G145800 Sobic002G145800 Sobic001G087600--Sobic002G145800 Sobic001G087600--Sobic002G154000 Sobic001G087600--Sobic003G416700 Sobic002G430300 Sobic002G430300 Sobic001G087600--Sobic002G430300 Sobic005G167700 Sobic005G167700 Sobic001G087600--Sobic005G167700 Sobic002G371700 Sobic002G371700 Sobic001G087600--Sobic002G371700 Sobic003G214600 Sobic003G214600 Sobic005G200800--Sobic003G214600 Sobic007G183300 Sobic007G183300 Sobic005G200800--Sobic007G183300 Sobic007G168300 Sobic007G168300 Sobic005G200800--Sobic007G168300 Sobic002G029100 Sobic002G029100 Sobic005G200800--Sobic002G029100 Sobic005G200800--Sobic002G154000 Sobic005G200800--Sobic001G461400 Sobic009G255600 Sobic009G255600 Sobic005G200800--Sobic009G255600 Sobic005G200800--Sobic001G063700 Sobic005G200800--Sobic003G416700 Sobic003G360400--Sobic010G112100 Sobic003G360400--Sobic002G154000 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G389200 Sobic003G389200 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic005G112300 Sobic005G112300 Sobic003G360400--Sobic005G112300 Sobic003G360400--Sobic007G063000 Sobic003G360400--Sobic009G256300 Sobic002G071500--Sobic005G112300 Sobic003G408600 Sobic003G408600 Sobic002G071500--Sobic003G408600 Sobic008G009700 Sobic008G009700 Sobic002G071500--Sobic008G009700 Sobic010G116600 Sobic010G116600 Sobic002G071500--Sobic010G116600 Sobic001G026200 Sobic001G026200 Sobic002G071500--Sobic001G026200 Sobic002G071500--Sobic002G153700 Sobic002G071500--Sobic010G069100 Sobic003G119000 Sobic003G119000 Sobic002G071500--Sobic003G119000 Sobic010G201500 Sobic010G201500 Sobic002G071500--Sobic010G201500 Sobic010G112100--Sobic003G360400 Sobic010G112100--Sobic005G112300 Sobic010G112100--Sobic009G256300 Sobic010G112100--Sobic003G408600 Sobic010G112100--Sobic001G433800 Sobic001G540400 Sobic001G540400 Sobic010G112100--Sobic001G540400 Sobic007G062800 Sobic007G062800 Sobic010G112100--Sobic007G062800 Sobic004G242400 Sobic004G242400 Sobic010G112100--Sobic004G242400 Sobic010G112100--Sobic003G389200
Octagon: transcription factors


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