Gene annotation
Transcriptome id Sobic.009G177500.1,Sobic.009G177500.3,Sobic.009G177500.2
Synonym Sb09g023793
Functional annotation CCR4-NOT transcription factor, putative, expressed
UniProt A0A1Z5R4C0 , A0A1B6P9C5 , A0A1Z5R382
Pfam PF04153
Panther DB PTHR23326 PTHR23326:SF6
NCBI CDD -
KEGG Orthology K12605; CNOT2, CCR4-NOT transcription complex subunit 2
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G07705 : VIRE2 interacting protein 2,NOT2 / NOT3 / NOT5 family
RAP-DB (Rice) LOC_Os02g54120.4,LOC_Os02g54120.2,LOC_Os02g54120.1 : CCR4-NOT transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a013745 , Zm00025a044050
Brachypodium PNT71037 , PNT71036 , KQK05700 , KQK05699 , KQK05698
Barley HORVU1Hr1G069060.8 , HORVU1Hr1G069060.9 , HORVU1Hr1G069060.1 , HORVU1Hr1G069060.2 , HORVU1Hr1G069060.3 , HORVU1Hr1G069060.4 , HORVU1Hr1G069060.5 , HORVU1Hr1G069060.6 , HORVU1Hr1G069060.7 , HORVU1Hr1G069060.23 , HORVU1Hr1G069060.22 , HORVU1Hr1G069060.21 , HORVU1Hr1G069060.20 , HORVU1Hr1G069060.12 , HORVU1Hr1G069060.13 , HORVU1Hr1G069060.10 , HORVU1Hr1G069060.11 , HORVU1Hr1G069060.16 , HORVU1Hr1G069060.17 , HORVU1Hr1G069060.14 , HORVU1Hr1G069060.15 , HORVU1Hr1G069060.18 , HORVU1Hr1G069060.19
Wheat TraesCS1D02G303900 , TraesCS1B02G314900 , TraesCS1B02G314900 , TraesCS1B02G314900 , TraesCS1B02G314900 , TraesCS1B02G314900 , TraesCS1A02G304400 , TraesCS1A02G304400 , TraesCS1D02G303900 , TraesCS1D02G303900 , TraesCS1D02G303900
Populus PNS95568 , PNS95569 , PNT58353 , PNT58352 , PNT58357 , PNT58356 , PNT58355 , PNT58354 , PNS95571 , PNS95570 , PNS95573 , PNS95572 , PNS95575 , PNS95574 , PNS95577 , PNS95576 , PNS95578


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cDNA sequences
Sobic.009G177500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
2 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
3 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
4 Sobic.004G140600 exonuclease, putative, expressed K13288: orn, REX2, oligoribonuclease
5 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
6 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
7 Sobic.007G090430 - -
8 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
9 Sobic.002G343901 - -
10 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
11 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
12 Sobic.001G363500 DIRP family protein, putative, expressed -
13 Sobic.006G096900 expressed protein -
14 Sobic.006G252900 ubiquitin family protein, putative, expressed -
15 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
16 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
17 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
18 Sobic.004G048800 - K12599: SKI2, antiviral helicase SKI2
19 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
20 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R


Gene co-expression network
sample Sobic009G177500 Sobic009G177500 Sobic001G433800 Sobic001G433800 Sobic009G177500--Sobic001G433800 Sobic001G227200 Sobic001G227200 Sobic009G177500--Sobic001G227200 Sobic005G112300 Sobic005G112300 Sobic009G177500--Sobic005G112300 Sobic004G140600 Sobic004G140600 Sobic009G177500--Sobic004G140600 Sobic008G047800 Sobic008G047800 Sobic009G177500--Sobic008G047800 Sobic010G112100 Sobic010G112100 Sobic009G177500--Sobic010G112100 Sobic007G090430 Sobic007G090430 Sobic009G177500--Sobic007G090430 Sobic001G392300 Sobic001G392300 Sobic009G177500--Sobic001G392300 Sobic002G343901 Sobic002G343901 Sobic009G177500--Sobic002G343901 Sobic001G433800--Sobic010G112100 Sobic003G360400 Sobic003G360400 Sobic001G433800--Sobic003G360400 Sobic007G063000 Sobic007G063000 Sobic001G433800--Sobic007G063000 Sobic001G433800--Sobic005G112300 Sobic004G242400 Sobic004G242400 Sobic001G433800--Sobic004G242400 Sobic002G133300 Sobic002G133300 Sobic001G433800--Sobic002G133300 Sobic001G363500 Sobic001G363500 Sobic001G433800--Sobic001G363500 Sobic006G252900 Sobic006G252900 Sobic001G433800--Sobic006G252900 Sobic006G041600 Sobic006G041600 Sobic001G433800--Sobic006G041600 Sobic001G227200--Sobic004G140600 Sobic001G227200--Sobic009G177500 Sobic005G106500 Sobic005G106500 Sobic001G227200--Sobic005G106500 Sobic010G139000 Sobic010G139000 Sobic001G227200--Sobic010G139000 Sobic001G227200--Sobic002G343901 Sobic004G258700 Sobic004G258700 Sobic001G227200--Sobic004G258700 Sobic001G311500 Sobic001G311500 Sobic001G227200--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic001G227200--Sobic001G036050 Sobic001G456900 Sobic001G456900 Sobic001G227200--Sobic001G456900 Sobic005G112300--Sobic001G363500 Sobic007G062800 Sobic007G062800 Sobic005G112300--Sobic007G062800 Sobic005G112300--Sobic010G112100 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic001G540400 Sobic001G540400 Sobic005G112300--Sobic001G540400 Sobic010G010700 Sobic010G010700 Sobic005G112300--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic005G112300--Sobic005G008800 Sobic002G071500 Sobic002G071500 Sobic005G112300--Sobic002G071500 Sobic004G140600--Sobic001G227200 Sobic004G140600--Sobic009G177500 Sobic008G063300 Sobic008G063300 Sobic004G140600--Sobic008G063300 Sobic009G132700 Sobic009G132700 Sobic004G140600--Sobic009G132700 Sobic001G455600 Sobic001G455600 Sobic004G140600--Sobic001G455600 Sobic004G140600--Sobic010G139000 Sobic004G140600--Sobic002G343901 Sobic001G219600 Sobic001G219600 Sobic004G140600--Sobic001G219600 Sobic004G140600--Sobic001G433800 Sobic002G006900 Sobic002G006900 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic001G155000 Sobic001G155000 Sobic008G047800--Sobic001G155000 Sobic009G040600 Sobic009G040600 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600 Sobic010G112100--Sobic003G360400 Sobic010G112100--Sobic005G112300 Sobic009G256300 Sobic009G256300 Sobic010G112100--Sobic009G256300 Sobic003G408600 Sobic003G408600 Sobic010G112100--Sobic003G408600 Sobic010G112100--Sobic001G433800 Sobic010G112100--Sobic001G540400 Sobic010G112100--Sobic007G062800 Sobic010G112100--Sobic004G242400 Sobic003G389200 Sobic003G389200 Sobic010G112100--Sobic003G389200 Sobic008G173100 Sobic008G173100 Sobic007G090430--Sobic008G173100 Sobic007G090430--Sobic009G177500 Sobic001G384300 Sobic001G384300 Sobic007G090430--Sobic001G384300 Sobic009G260500 Sobic009G260500 Sobic007G090430--Sobic009G260500 Sobic002G063900 Sobic002G063900 Sobic007G090430--Sobic002G063900 Sobic001G398800 Sobic001G398800 Sobic007G090430--Sobic001G398800 Sobic004G048800 Sobic004G048800 Sobic007G090430--Sobic004G048800 Sobic005G207500 Sobic005G207500 Sobic007G090430--Sobic005G207500 Sobic002G317200 Sobic002G317200 Sobic007G090430--Sobic002G317200 Sobic001G080700 Sobic001G080700 Sobic001G392300--Sobic001G080700 Sobic007G061000 Sobic007G061000 Sobic001G392300--Sobic007G061000 Sobic001G392300--Sobic009G177500 Sobic004G353200 Sobic004G353200 Sobic001G392300--Sobic004G353200 Sobic001G007000 Sobic001G007000 Sobic001G392300--Sobic001G007000 Sobic007G075900 Sobic007G075900 Sobic001G392300--Sobic007G075900 Sobic009G044800 Sobic009G044800 Sobic001G392300--Sobic009G044800 Sobic001G392300--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic001G392300--Sobic006G200600 Sobic002G180666 Sobic002G180666 Sobic002G343901--Sobic002G180666 Sobic006G216800 Sobic006G216800 Sobic002G343901--Sobic006G216800 Sobic002G343901--Sobic009G177500 Sobic003G148000 Sobic003G148000 Sobic002G343901--Sobic003G148000 Sobic002G343901--Sobic001G227200 Sobic008G162900 Sobic008G162900 Sobic002G343901--Sobic008G162900 Sobic002G343901--Sobic004G140600 Sobic002G133400 Sobic002G133400 Sobic002G343901--Sobic002G133400 Sobic002G343901--Sobic005G112300
Octagon: transcription factors


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