Gene annotation
Transcriptome id Sobic.005G027400.3,Sobic.005G027400.2
Synonym Sb05g002300
Functional annotation RNA recognition motif containing protein, expressed
UniProt C5Y449
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF350
NCBI CDD KOG0117; Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)
KEGG Orthology K13161; heterogeneous nuclear ribonucleoprotein R
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G00830 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os12g04180.3,LOC_Os12g04180.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a013102 , Zm00025a033427 , Zm00025a053691
Brachypodium -
Barley -
Wheat TraesCS4D02G127500 , TraesCS4D02G127500 , TraesCS4A02G186200 , TraesCS4B02G132700 , TraesCS4B02G132700 , TraesCS4B02G132700
Populus -


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cDNA sequences
Sobic.005G027400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
2 Sobic.004G065100 RNA recognition motif, putative, expressed K12842: U2-associated protein SR140
3 Sobic.001G451400 HEAT repeat family protein, putative, expressed K15305: VAC14, vacuole morphology and inheritance protein 14
4 Sobic.009G132700 - -
5 Sobic.007G117400 expressed protein -
6 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
7 Sobic.001G289800 BAH domain containing protein, putative, expressed -
8 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
9 Sobic.004G006900 OsFBX49 - F-box domain containing protein, expressed -
10 Sobic.010G143800 expressed protein -
11 Sobic.001G441400 transcription factor, putative, expressed K09060: plant G-box-binding factor
12 Sobic.003G184699 - -
13 Sobic.001G363500 DIRP family protein, putative, expressed -
14 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
15 Sobic.006G252900 ubiquitin family protein, putative, expressed -
16 Sobic.006G041600 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
17 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
18 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
19 Sobic.009G191000 MATH domain containing protein, expressed -
20 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -


Gene co-expression network
sample Sobic005G027400 Sobic005G027400 Sobic002G309600 Sobic002G309600 Sobic005G027400--Sobic002G309600 Sobic004G065100 Sobic004G065100 Sobic005G027400--Sobic004G065100 Sobic001G451400 Sobic001G451400 Sobic005G027400--Sobic001G451400 Sobic009G132700 Sobic009G132700 Sobic005G027400--Sobic009G132700 Sobic007G117400 Sobic007G117400 Sobic005G027400--Sobic007G117400 Sobic001G219600 Sobic001G219600 Sobic005G027400--Sobic001G219600 Sobic001G289800 Sobic001G289800 Sobic005G027400--Sobic001G289800 Sobic008G047800 Sobic008G047800 Sobic005G027400--Sobic008G047800 Sobic004G006900 Sobic004G006900 Sobic005G027400--Sobic004G006900 Sobic003G280800 Sobic003G280800 Sobic002G309600--Sobic003G280800 Sobic002G134200 Sobic002G134200 Sobic002G309600--Sobic002G134200 Sobic002G309600--Sobic007G117400 Sobic008G009700 Sobic008G009700 Sobic002G309600--Sobic008G009700 Sobic001G071400 Sobic001G071400 Sobic002G309600--Sobic001G071400 Sobic005G112300 Sobic005G112300 Sobic002G309600--Sobic005G112300 Sobic002G309600--Sobic004G065100 Sobic001G154900 Sobic001G154900 Sobic002G309600--Sobic001G154900 Sobic002G006900 Sobic002G006900 Sobic002G309600--Sobic002G006900 Sobic001G241200 Sobic001G241200 Sobic004G065100--Sobic001G241200 Sobic004G065100--Sobic002G309600 Sobic004G065100--Sobic007G117400 Sobic003G119000 Sobic003G119000 Sobic004G065100--Sobic003G119000 Sobic004G065100--Sobic005G027400 Sobic004G065100--Sobic001G154900 Sobic005G008800 Sobic005G008800 Sobic004G065100--Sobic005G008800 Sobic005G104500 Sobic005G104500 Sobic004G065100--Sobic005G104500 Sobic004G065100--Sobic005G112300 Sobic007G008900 Sobic007G008900 Sobic001G451400--Sobic007G008900 Sobic009G165700 Sobic009G165700 Sobic001G451400--Sobic009G165700 Sobic001G441400 Sobic001G441400 Sobic001G451400--Sobic001G441400 Sobic001G389100 Sobic001G389100 Sobic001G451400--Sobic001G389100 Sobic010G247800 Sobic010G247800 Sobic001G451400--Sobic010G247800 Sobic003G404500 Sobic003G404500 Sobic001G451400--Sobic003G404500 Sobic010G226000 Sobic010G226000 Sobic001G451400--Sobic010G226000 Sobic001G451400--Sobic005G027400 Sobic003G422500 Sobic003G422500 Sobic001G451400--Sobic003G422500 Sobic009G132700--Sobic005G027400 Sobic004G140600 Sobic004G140600 Sobic009G132700--Sobic004G140600 Sobic003G170900 Sobic003G170900 Sobic009G132700--Sobic003G170900 Sobic001G455600 Sobic001G455600 Sobic009G132700--Sobic001G455600 Sobic002G211800 Sobic002G211800 Sobic009G132700--Sobic002G211800 Sobic006G252900 Sobic006G252900 Sobic009G132700--Sobic006G252900 Sobic001G433800 Sobic001G433800 Sobic009G132700--Sobic001G433800 Sobic001G111850 Sobic001G111850 Sobic009G132700--Sobic001G111850 Sobic003G188400 Sobic003G188400 Sobic009G132700--Sobic003G188400 Sobic007G117400--Sobic002G309600 Sobic007G117400--Sobic001G241200 Sobic007G117400--Sobic004G065100 Sobic007G161000 Sobic007G161000 Sobic007G117400--Sobic007G161000 Sobic007G117400--Sobic003G280800 Sobic004G009600 Sobic004G009600 Sobic007G117400--Sobic004G009600 Sobic007G117400--Sobic001G154900 Sobic009G040600 Sobic009G040600 Sobic007G117400--Sobic009G040600 Sobic007G117400--Sobic005G008800 Sobic009G260500 Sobic009G260500 Sobic001G219600--Sobic009G260500 Sobic001G219600--Sobic002G309600 Sobic002G317200 Sobic002G317200 Sobic001G219600--Sobic002G317200 Sobic009G047200 Sobic009G047200 Sobic001G219600--Sobic009G047200 Sobic003G141500 Sobic003G141500 Sobic001G219600--Sobic003G141500 Sobic010G139000 Sobic010G139000 Sobic001G219600--Sobic010G139000 Sobic001G219600--Sobic001G071400 Sobic002G397500 Sobic002G397500 Sobic001G219600--Sobic002G397500 Sobic001G020000 Sobic001G020000 Sobic001G219600--Sobic001G020000 Sobic001G289600 Sobic001G289600 Sobic001G289800--Sobic001G289600 Sobic001G289800--Sobic003G422500 Sobic001G194200 Sobic001G194200 Sobic001G289800--Sobic001G194200 Sobic004G291900 Sobic004G291900 Sobic001G289800--Sobic004G291900 Sobic004G034900 Sobic004G034900 Sobic001G289800--Sobic004G034900 Sobic001G002000 Sobic001G002000 Sobic001G289800--Sobic001G002000 Sobic010G010700 Sobic010G010700 Sobic001G289800--Sobic010G010700 Sobic007G062800 Sobic007G062800 Sobic001G289800--Sobic007G062800 Sobic005G001000 Sobic005G001000 Sobic001G289800--Sobic005G001000 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic001G155000 Sobic001G155000 Sobic008G047800--Sobic001G155000 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic008G047800--Sobic002G309600 Sobic004G006900--Sobic005G027400 Sobic004G006900--Sobic001G441400 Sobic004G006900--Sobic002G309600 Sobic010G143800 Sobic010G143800 Sobic004G006900--Sobic010G143800 Sobic004G263600 Sobic004G263600 Sobic004G006900--Sobic004G263600 Sobic002G299700 Sobic002G299700 Sobic004G006900--Sobic002G299700 Sobic002G275600 Sobic002G275600 Sobic004G006900--Sobic002G275600 Sobic004G006900--Sobic001G451400 Sobic004G006900--Sobic006G252900
Octagon: transcription factors


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