Gene annotation
Transcriptome id Sobic.009G191000.3,Sobic.009G191000.2,Sobic.009G191000.4,Sobic.009G191000.1
Synonym
Functional annotation MATH domain containing protein, expressed
UniProt A0A1B6PA09 , A0A1Z5R3G4 , A0A1Z5R4B0
Pfam PF00917
Panther DB PTHR24007
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G04300 : TRAF-like superfamily protein
RAP-DB (Rice) LOC_Os05g43280.1 : MATH domain containing protein, expressed
MaizeGDB (Corn) Zm00025a051728 , Zm00025a037909 , Zm00025a044172 , Zm00025a027335 , Zm00025a008510
Brachypodium KQK05507 , KQK05506 , KQK05505 , KQK05504 , PNT72960 , KQJ85980 , KQK10017 , PNT70952 , PNT70951 , PNT72959
Barley HORVU1Hr1G078170.10 , HORVU1Hr1G078170.8 , HORVU1Hr1G078170.9 , HORVU1Hr1G078170.2 , HORVU1Hr1G078170.5 , HORVU1Hr1G078170.6 , HORVU1Hr1G078170.7
Wheat TraesCS1B02G339200 , TraesCS1B02G339200 , TraesCS3B02G343300 , TraesCS3B02G343300 , TraesCS1D02G327700 , TraesCS3D02G310000 , TraesCS3D02G310000 , TraesCS1A02G325900 , TraesCS1A02G325900 , TraesCS3A02G321300 , TraesCS3A02G321300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
2 Sobic.002G411600 CW-type Zinc Finger, putative, expressed -
3 Sobic.003G422500 expressed protein -
4 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C
5 Sobic.001G289600 BAH domain containing protein, putative, expressed -
6 Sobic.003G313500 MATH domain containing protein, expressed -
7 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
8 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
9 Sobic.001G365900 PWWP domain containing protein, expressed -
10 Sobic.008G132600 expressed protein -
11 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
12 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
13 Sobic.001G289800 BAH domain containing protein, putative, expressed -
14 Sobic.010G010700 PHD-finger family protein, expressed -
15 Sobic.003G118200 phosphoadenosine phosphosulfate, putative, expressed -
16 Sobic.001G540400 expressed protein -
17 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
18 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
19 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
20 Sobic.002G405800 PHD-finger family protein, expressed -


Gene co-expression network
sample Sobic009G191000 Sobic009G191000 Sobic002G008900 Sobic002G008900 Sobic009G191000--Sobic002G008900 Sobic002G411600 Sobic002G411600 Sobic009G191000--Sobic002G411600 Sobic003G422500 Sobic003G422500 Sobic009G191000--Sobic003G422500 Sobic009G053900 Sobic009G053900 Sobic009G191000--Sobic009G053900 Sobic001G289600 Sobic001G289600 Sobic009G191000--Sobic001G289600 Sobic003G313500 Sobic003G313500 Sobic009G191000--Sobic003G313500 Sobic010G247800 Sobic010G247800 Sobic009G191000--Sobic010G247800 Sobic004G034900 Sobic004G034900 Sobic009G191000--Sobic004G034900 Sobic001G365900 Sobic001G365900 Sobic009G191000--Sobic001G365900 Sobic002G008900--Sobic009G191000 Sobic002G008900--Sobic002G411600 Sobic007G062800 Sobic007G062800 Sobic002G008900--Sobic007G062800 Sobic002G008900--Sobic003G422500 Sobic005G001000 Sobic005G001000 Sobic002G008900--Sobic005G001000 Sobic010G010700 Sobic010G010700 Sobic002G008900--Sobic010G010700 Sobic002G008900--Sobic004G034900 Sobic010G206900 Sobic010G206900 Sobic002G008900--Sobic010G206900 Sobic002G008900--Sobic009G053900 Sobic002G411600--Sobic009G191000 Sobic002G411600--Sobic003G422500 Sobic002G411600--Sobic010G206900 Sobic002G411600--Sobic002G008900 Sobic002G411600--Sobic004G034900 Sobic004G174200 Sobic004G174200 Sobic002G411600--Sobic004G174200 Sobic002G411600--Sobic010G247800 Sobic001G534700 Sobic001G534700 Sobic002G411600--Sobic001G534700 Sobic003G101400 Sobic003G101400 Sobic002G411600--Sobic003G101400 Sobic003G422500--Sobic002G411600 Sobic003G422500--Sobic009G191000 Sobic003G422500--Sobic001G289600 Sobic009G165700 Sobic009G165700 Sobic003G422500--Sobic009G165700 Sobic003G422500--Sobic002G008900 Sobic003G422500--Sobic004G034900 Sobic001G289800 Sobic001G289800 Sobic003G422500--Sobic001G289800 Sobic001G540400 Sobic001G540400 Sobic003G422500--Sobic001G540400 Sobic008G132600 Sobic008G132600 Sobic003G422500--Sobic008G132600 Sobic009G053900--Sobic009G191000 Sobic003G118200 Sobic003G118200 Sobic009G053900--Sobic003G118200 Sobic009G053900--Sobic002G008900 Sobic009G053900--Sobic003G422500 Sobic009G053900--Sobic001G365900 Sobic009G053900--Sobic001G289600 Sobic009G053900--Sobic010G206900 Sobic007G075400 Sobic007G075400 Sobic009G053900--Sobic007G075400 Sobic009G053900--Sobic001G540400 Sobic001G289600--Sobic001G540400 Sobic001G289600--Sobic004G034900 Sobic001G289600--Sobic001G289800 Sobic001G289600--Sobic003G422500 Sobic001G289600--Sobic001G365900 Sobic001G289600--Sobic009G191000 Sobic005G008800 Sobic005G008800 Sobic001G289600--Sobic005G008800 Sobic007G105100 Sobic007G105100 Sobic001G289600--Sobic007G105100 Sobic001G289600--Sobic010G010700 Sobic003G313500--Sobic009G191000 Sobic003G313500--Sobic003G422500 Sobic003G313500--Sobic002G411600 Sobic003G313500--Sobic001G540400 Sobic003G313500--Sobic004G034900 Sobic003G313500--Sobic001G289600 Sobic003G313500--Sobic009G053900 Sobic003G313500--Sobic002G008900 Sobic003G313500--Sobic001G365900 Sobic010G247800--Sobic010G206900 Sobic010G247800--Sobic009G165700 Sobic010G247800--Sobic002G411600 Sobic010G247800--Sobic003G422500 Sobic010G247800--Sobic009G191000 Sobic001G002000 Sobic001G002000 Sobic010G247800--Sobic001G002000 Sobic001G363500 Sobic001G363500 Sobic010G247800--Sobic001G363500 Sobic004G291900 Sobic004G291900 Sobic010G247800--Sobic004G291900 Sobic002G405800 Sobic002G405800 Sobic010G247800--Sobic002G405800 Sobic004G034900--Sobic001G289600 Sobic004G034900--Sobic010G206900 Sobic004G034900--Sobic010G010700 Sobic004G034900--Sobic002G411600 Sobic004G034900--Sobic001G540400 Sobic004G034900--Sobic003G422500 Sobic004G276400 Sobic004G276400 Sobic004G034900--Sobic004G276400 Sobic004G034900--Sobic002G008900 Sobic004G034900--Sobic007G062800 Sobic001G365900--Sobic010G206900 Sobic001G365900--Sobic001G534700 Sobic001G365900--Sobic001G289600 Sobic008G130100 Sobic008G130100 Sobic001G365900--Sobic008G130100 Sobic001G365900--Sobic002G411600 Sobic001G365900--Sobic002G008900 Sobic001G365900--Sobic009G191000 Sobic001G365900--Sobic004G034900 Sobic001G365900--Sobic001G540400
Octagon: transcription factors


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