Gene annotation
Transcriptome id Sobic.002G008900.1
Synonym EMB2773, ATSCC2, SCC2
Functional annotation sister chromatid cohesion 2, putative, expressed
UniProt C5X796
Pfam PF12765 PF12830
Panther DB PTHR21704
NCBI CDD -
KEGG Orthology K06672; SCC2, cohesin loading factor subunit SCC2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G15540 : PHD finger family protein
RAP-DB (Rice) LOC_Os07g01940.1 : sister chromatid cohesion 2, putative, expressed
MaizeGDB (Corn) Zm00025a044885 , Zm00025a053107 , Zm00025a016250
Brachypodium KQK21199 , KQK21202 , KQK21203 , KQK21200 , KQK21201
Barley HORVU2Hr1G033240.23 , HORVU2Hr1G033240.22 , HORVU2Hr1G033240.21 , HORVU2Hr1G033240.20 , HORVU2Hr1G033240.27 , HORVU2Hr1G033240.26 , HORVU2Hr1G033240.25 , HORVU2Hr1G033240.29 , HORVU2Hr1G033240.28 , HORVU2Hr1G064000.10 , HORVU2Hr1G064000.11 , HORVU2Hr1G064000.12 , HORVU2Hr1G064000.13 , HORVU2Hr1G064000.14 , HORVU2Hr1G064000.15 , HORVU2Hr1G064000.16 , HORVU2Hr1G064000.17 , HORVU2Hr1G064000.18 , HORVU2Hr1G064000.19 , HORVU2Hr1G033240.30 , HORVU2Hr1G033240.31 , HORVU2Hr1G033240.32 , HORVU2Hr1G033240.33 , HORVU2Hr1G033240.34 , HORVU2Hr1G033240.35 , HORVU2Hr1G033240.36 , HORVU2Hr1G033240.38 , HORVU2Hr1G033240.39 , HORVU2Hr1G033240.37 , HORVU2Hr1G033240.41 , HORVU2Hr1G033240.40 , HORVU2Hr1G033240.43 , HORVU2Hr1G033240.42 , HORVU2Hr1G033240.45 , HORVU2Hr1G033240.44 , HORVU2Hr1G033240.47 , HORVU2Hr1G033240.46 , HORVU2Hr1G033240.49 , HORVU2Hr1G033240.48 , HORVU2Hr1G033240.1 , HORVU2Hr1G033240.2 , HORVU2Hr1G033240.3 , HORVU2Hr1G033240.4 , HORVU2Hr1G033240.5 , HORVU2Hr1G033240.6 , HORVU2Hr1G033240.18 , HORVU2Hr1G033240.19 , HORVU2Hr1G033240.12 , HORVU2Hr1G033240.13 , HORVU2Hr1G033240.10 , HORVU2Hr1G033240.11 , HORVU2Hr1G033240.16 , HORVU2Hr1G033240.17 , HORVU2Hr1G033240.14 , HORVU2Hr1G033240.15 , HORVU2Hr1G064000.2 , HORVU2Hr1G064000.3 , HORVU2Hr1G064000.1 , HORVU2Hr1G064000.6 , HORVU2Hr1G064000.7 , HORVU2Hr1G064000.4 , HORVU2Hr1G064000.5 , HORVU2Hr1G064000.8 , HORVU2Hr1G064000.9
Wheat TraesCS2A02G260400 , TraesCS2D02G263300 , TraesCS2B02G281600 , TraesCS2B02G281600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G191000 MATH domain containing protein, expressed -
2 Sobic.002G411600 CW-type Zinc Finger, putative, expressed -
3 Sobic.007G062800 SET domain containing protein, expressed -
4 Sobic.003G422500 expressed protein -
5 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
6 Sobic.010G010700 PHD-finger family protein, expressed -
7 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
8 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
9 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C
10 Sobic.001G540400 expressed protein -
11 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
12 Sobic.001G365900 PWWP domain containing protein, expressed -
13 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
14 Sobic.002G405800 PHD-finger family protein, expressed -
15 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
16 Sobic.001G289600 BAH domain containing protein, putative, expressed -
17 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
18 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -
19 Sobic.003G313500 MATH domain containing protein, expressed -
20 Sobic.001G289800 BAH domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G008900 Sobic002G008900 Sobic009G191000 Sobic009G191000 Sobic002G008900--Sobic009G191000 Sobic002G411600 Sobic002G411600 Sobic002G008900--Sobic002G411600 Sobic007G062800 Sobic007G062800 Sobic002G008900--Sobic007G062800 Sobic003G422500 Sobic003G422500 Sobic002G008900--Sobic003G422500 Sobic005G001000 Sobic005G001000 Sobic002G008900--Sobic005G001000 Sobic010G010700 Sobic010G010700 Sobic002G008900--Sobic010G010700 Sobic004G034900 Sobic004G034900 Sobic002G008900--Sobic004G034900 Sobic010G206900 Sobic010G206900 Sobic002G008900--Sobic010G206900 Sobic009G053900 Sobic009G053900 Sobic002G008900--Sobic009G053900 Sobic009G191000--Sobic002G008900 Sobic009G191000--Sobic002G411600 Sobic009G191000--Sobic003G422500 Sobic009G191000--Sobic009G053900 Sobic001G289600 Sobic001G289600 Sobic009G191000--Sobic001G289600 Sobic003G313500 Sobic003G313500 Sobic009G191000--Sobic003G313500 Sobic010G247800 Sobic010G247800 Sobic009G191000--Sobic010G247800 Sobic009G191000--Sobic004G034900 Sobic001G365900 Sobic001G365900 Sobic009G191000--Sobic001G365900 Sobic002G411600--Sobic009G191000 Sobic002G411600--Sobic003G422500 Sobic002G411600--Sobic010G206900 Sobic002G411600--Sobic002G008900 Sobic002G411600--Sobic004G034900 Sobic004G174200 Sobic004G174200 Sobic002G411600--Sobic004G174200 Sobic002G411600--Sobic010G247800 Sobic001G534700 Sobic001G534700 Sobic002G411600--Sobic001G534700 Sobic003G101400 Sobic003G101400 Sobic002G411600--Sobic003G101400 Sobic001G540400 Sobic001G540400 Sobic007G062800--Sobic001G540400 Sobic005G112300 Sobic005G112300 Sobic007G062800--Sobic005G112300 Sobic002G405800 Sobic002G405800 Sobic007G062800--Sobic002G405800 Sobic007G062800--Sobic002G008900 Sobic007G062800--Sobic010G010700 Sobic004G242400 Sobic004G242400 Sobic007G062800--Sobic004G242400 Sobic007G062800--Sobic004G034900 Sobic004G276400 Sobic004G276400 Sobic007G062800--Sobic004G276400 Sobic002G397500 Sobic002G397500 Sobic007G062800--Sobic002G397500 Sobic003G422500--Sobic002G411600 Sobic003G422500--Sobic009G191000 Sobic003G422500--Sobic001G289600 Sobic009G165700 Sobic009G165700 Sobic003G422500--Sobic009G165700 Sobic003G422500--Sobic002G008900 Sobic003G422500--Sobic004G034900 Sobic001G289800 Sobic001G289800 Sobic003G422500--Sobic001G289800 Sobic003G422500--Sobic001G540400 Sobic008G132600 Sobic008G132600 Sobic003G422500--Sobic008G132600 Sobic001G194200 Sobic001G194200 Sobic005G001000--Sobic001G194200 Sobic005G001000--Sobic002G008900 Sobic001G370900 Sobic001G370900 Sobic005G001000--Sobic001G370900 Sobic003G205200 Sobic003G205200 Sobic005G001000--Sobic003G205200 Sobic004G291900 Sobic004G291900 Sobic005G001000--Sobic004G291900 Sobic003G186000 Sobic003G186000 Sobic005G001000--Sobic003G186000 Sobic008G001200 Sobic008G001200 Sobic005G001000--Sobic008G001200 Sobic005G001000--Sobic003G422500 Sobic009G256400 Sobic009G256400 Sobic005G001000--Sobic009G256400 Sobic010G010700--Sobic010G206900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic010G010700--Sobic001G194200 Sobic010G010700--Sobic007G062800 Sobic010G010700--Sobic002G008900 Sobic010G010700--Sobic005G112300 Sobic010G010700--Sobic008G001200 Sobic010G010700--Sobic003G186000 Sobic004G034900--Sobic001G289600 Sobic004G034900--Sobic010G206900 Sobic004G034900--Sobic010G010700 Sobic004G034900--Sobic002G411600 Sobic004G034900--Sobic001G540400 Sobic004G034900--Sobic003G422500 Sobic004G034900--Sobic004G276400 Sobic004G034900--Sobic002G008900 Sobic004G034900--Sobic007G062800 Sobic010G206900--Sobic010G010700 Sobic010G206900--Sobic001G365900 Sobic010G206900--Sobic004G034900 Sobic010G206900--Sobic001G534700 Sobic010G206900--Sobic010G247800 Sobic010G206900--Sobic002G411600 Sobic010G206900--Sobic008G001200 Sobic003G196300 Sobic003G196300 Sobic010G206900--Sobic003G196300 Sobic010G206900--Sobic009G165700 Sobic009G053900--Sobic009G191000 Sobic003G118200 Sobic003G118200 Sobic009G053900--Sobic003G118200 Sobic009G053900--Sobic002G008900 Sobic009G053900--Sobic003G422500 Sobic009G053900--Sobic001G365900 Sobic009G053900--Sobic001G289600 Sobic009G053900--Sobic010G206900 Sobic007G075400 Sobic007G075400 Sobic009G053900--Sobic007G075400 Sobic009G053900--Sobic001G540400
Octagon: transcription factors


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