Gene annotation
Transcriptome id Sobic.007G062800.1,Sobic.007G062800.2
Synonym ATXR3, Sb07g005020, SDG2
Functional annotation SET domain containing protein, expressed
UniProt C5YHX1
Pfam PF00856
Panther DB PTHR22884 PTHR22884:SF343
NCBI CDD KOG1080; Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G15180 : SET domain protein 2
RAP-DB (Rice) LOC_Os08g08210.1 : SET domain containing protein, expressed
MaizeGDB (Corn) Zm00025a017613 , Zm00025a029998 , Zm00025a052429 , Zm00025a054766 , Zm00025a032458 , Zm00025a032457 , Zm00025a032420 , Zm00025a032421 , Zm00025a007716
Brachypodium KQJ95145
Barley HORVU7Hr1G066590.9 , HORVU7Hr1G066590.8 , HORVU7Hr1G066590.3 , HORVU7Hr1G066590.2 , HORVU7Hr1G066590.1 , HORVU7Hr1G066590.7 , HORVU7Hr1G066590.6 , HORVU7Hr1G066590.5 , HORVU7Hr1G066590.4 , HORVU7Hr1G066590.13 , HORVU7Hr1G066590.12 , HORVU7Hr1G066590.11 , HORVU7Hr1G066590.10 , HORVU7Hr1G066590.16 , HORVU7Hr1G066590.15 , HORVU7Hr1G066590.14
Wheat TraesCS7B02G197700 , TraesCS7B02G197700 , TraesCS7B02G197700 , TraesCS7B02G197700 , TraesCS7D02G287600 , TraesCS7D02G287600 , TraesCS7D02G287600 , TraesCS7A02G287700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G540400 expressed protein -
2 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
3 Sobic.002G405800 PHD-finger family protein, expressed -
4 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
5 Sobic.010G010700 PHD-finger family protein, expressed -
6 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
7 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
8 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
9 Sobic.002G397500 SAC3/GANP family protein, expressed -
10 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
11 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
12 Sobic.003G422500 expressed protein -
13 Sobic.001G289800 BAH domain containing protein, putative, expressed -
14 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
15 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
16 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
17 Sobic.001G363500 DIRP family protein, putative, expressed -
18 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
19 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
20 Sobic.010G105200 SYD, putative, expressed -


Gene co-expression network
sample Sobic007G062800 Sobic007G062800 Sobic001G540400 Sobic001G540400 Sobic007G062800--Sobic001G540400 Sobic005G112300 Sobic005G112300 Sobic007G062800--Sobic005G112300 Sobic002G405800 Sobic002G405800 Sobic007G062800--Sobic002G405800 Sobic002G008900 Sobic002G008900 Sobic007G062800--Sobic002G008900 Sobic010G010700 Sobic010G010700 Sobic007G062800--Sobic010G010700 Sobic004G242400 Sobic004G242400 Sobic007G062800--Sobic004G242400 Sobic004G034900 Sobic004G034900 Sobic007G062800--Sobic004G034900 Sobic004G276400 Sobic004G276400 Sobic007G062800--Sobic004G276400 Sobic002G397500 Sobic002G397500 Sobic007G062800--Sobic002G397500 Sobic001G289600 Sobic001G289600 Sobic001G540400--Sobic001G289600 Sobic003G408600 Sobic003G408600 Sobic001G540400--Sobic003G408600 Sobic001G540400--Sobic007G062800 Sobic005G008800 Sobic005G008800 Sobic001G540400--Sobic005G008800 Sobic001G540400--Sobic004G034900 Sobic001G540400--Sobic005G112300 Sobic003G422500 Sobic003G422500 Sobic001G540400--Sobic003G422500 Sobic001G540400--Sobic002G397500 Sobic010G112100 Sobic010G112100 Sobic001G540400--Sobic010G112100 Sobic001G363500 Sobic001G363500 Sobic005G112300--Sobic001G363500 Sobic005G112300--Sobic007G062800 Sobic005G112300--Sobic010G112100 Sobic010G139000 Sobic010G139000 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic005G112300--Sobic001G540400 Sobic005G112300--Sobic010G010700 Sobic005G112300--Sobic005G008800 Sobic002G071500 Sobic002G071500 Sobic005G112300--Sobic002G071500 Sobic002G405800--Sobic007G062800 Sobic002G405800--Sobic005G112300 Sobic002G404700 Sobic002G404700 Sobic002G405800--Sobic002G404700 Sobic002G405800--Sobic010G010700 Sobic010G279450 Sobic010G279450 Sobic002G405800--Sobic010G279450 Sobic002G405800--Sobic002G008900 Sobic002G405800--Sobic004G034900 Sobic002G405800--Sobic001G289600 Sobic010G247800 Sobic010G247800 Sobic002G405800--Sobic010G247800 Sobic009G191000 Sobic009G191000 Sobic002G008900--Sobic009G191000 Sobic002G411600 Sobic002G411600 Sobic002G008900--Sobic002G411600 Sobic002G008900--Sobic007G062800 Sobic002G008900--Sobic003G422500 Sobic005G001000 Sobic005G001000 Sobic002G008900--Sobic005G001000 Sobic002G008900--Sobic010G010700 Sobic002G008900--Sobic004G034900 Sobic010G206900 Sobic010G206900 Sobic002G008900--Sobic010G206900 Sobic009G053900 Sobic009G053900 Sobic002G008900--Sobic009G053900 Sobic010G010700--Sobic010G206900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic001G194200 Sobic001G194200 Sobic010G010700--Sobic001G194200 Sobic010G010700--Sobic007G062800 Sobic010G010700--Sobic002G008900 Sobic010G010700--Sobic005G112300 Sobic008G001200 Sobic008G001200 Sobic010G010700--Sobic008G001200 Sobic003G186000 Sobic003G186000 Sobic010G010700--Sobic003G186000 Sobic004G242400--Sobic007G062800 Sobic009G109200 Sobic009G109200 Sobic004G242400--Sobic009G109200 Sobic010G105200 Sobic010G105200 Sobic004G242400--Sobic010G105200 Sobic004G242400--Sobic004G276400 Sobic004G242400--Sobic010G010700 Sobic004G242400--Sobic010G112100 Sobic004G314000 Sobic004G314000 Sobic004G242400--Sobic004G314000 Sobic009G256300 Sobic009G256300 Sobic004G242400--Sobic009G256300 Sobic001G433800 Sobic001G433800 Sobic004G242400--Sobic001G433800 Sobic004G034900--Sobic001G289600 Sobic004G034900--Sobic010G206900 Sobic004G034900--Sobic010G010700 Sobic004G034900--Sobic002G411600 Sobic004G034900--Sobic001G540400 Sobic004G034900--Sobic003G422500 Sobic004G034900--Sobic004G276400 Sobic004G034900--Sobic002G008900 Sobic004G034900--Sobic007G062800 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G276400--Sobic004G034900 Sobic004G276400--Sobic007G062800 Sobic004G291900 Sobic004G291900 Sobic004G276400--Sobic004G291900 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic002G397500--Sobic003G408600 Sobic002G397500--Sobic007G062800 Sobic002G397500--Sobic005G112300 Sobic002G397500--Sobic001G540400 Sobic002G397500--Sobic009G109200 Sobic003G072200 Sobic003G072200 Sobic002G397500--Sobic003G072200 Sobic002G397500--Sobic004G242400 Sobic002G397500--Sobic004G276400 Sobic002G397500--Sobic010G112100
Octagon: transcription factors


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