Gene annotation
Transcriptome id Sobic.003G072200.1
Synonym Sb03g006120, PRT6
Functional annotation zinc finger protein, putative, expressed
UniProt C5XPZ8
Pfam PF02207
Panther DB PTHR21497 PTHR21497:SF24
NCBI CDD KOG1139; Predicted ubiquitin-protein ligase of the N-recognin family
KEGG Orthology K11978; E3 ubiquitin-protein ligase UBR3
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G02310 : proteolysis 6
RAP-DB (Rice) LOC_Os01g05500.1 : zinc finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a023462
Brachypodium PNT69934 , KQK02705
Barley HORVU3Hr1G013300.21 , HORVU3Hr1G013300.20 , HORVU3Hr1G013300.23 , HORVU3Hr1G013300.22 , HORVU3Hr1G013300.24 , HORVU3Hr1G013300.8 , HORVU3Hr1G013300.9 , HORVU3Hr1G013300.6 , HORVU3Hr1G013300.7 , HORVU3Hr1G013300.4 , HORVU3Hr1G013300.5 , HORVU3Hr1G013300.2 , HORVU3Hr1G013300.3 , HORVU3Hr1G013300.1 , HORVU4Hr1G088660.1 , HORVU3Hr1G106440.1 , HORVU4Hr1G024900.1 , HORVU2Hr1G087100.1 , HORVU3Hr1G013300.14 , HORVU3Hr1G013300.15 , HORVU3Hr1G013300.17 , HORVU3Hr1G013300.10 , HORVU3Hr1G013300.11 , HORVU3Hr1G013300.12 , HORVU3Hr1G013300.13 , HORVU3Hr1G013300.18 , HORVU3Hr1G013300.19
Wheat TraesCS3A02G073400 , TraesCS3A02G073400 , TraesCS3D02G073100 , TraesCS3B02G086400 , TraesCS3B02G086400 , TraesCS3B02G086400 , TraesCS3B02G086400 , TraesCS3A02G072400 , TraesCS3A02G072400 , TraesCS3B02G087600 , TraesCS3B02G087600 , TraesCS3D02G072000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G397500 SAC3/GANP family protein, expressed -
2 Sobic.007G098500 BIG, putative, expressed K10691: UBR4, E3 ubiquitin-protein ligase UBR4
3 Sobic.007G062800 SET domain containing protein, expressed -
4 Sobic.003G233400 expressed protein -
5 Sobic.009G084900 expressed protein -
6 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
7 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
8 Sobic.001G347500 expressed protein -
9 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
10 Sobic.001G289800 BAH domain containing protein, putative, expressed -
11 Sobic.010G105200 SYD, putative, expressed -
12 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
13 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
14 Sobic.008G092600 ubiquitin-protein ligase 1, putative, expressed K10592: HUWE1, MULE, E3 ubiquitin-protein ligase HUWE1
15 Sobic.001G287500 heat shock protein DnaJ, putative, expressed K09533: DnaJ homolog subfamily C member 13
16 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
17 Sobic.001G363500 DIRP family protein, putative, expressed -
18 Sobic.003G312100 guanine nucleotide exchange family protein, putative, expressed -
19 Sobic.004G051200 WD domain containing protein, putative, expressed -
20 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR


Gene co-expression network
sample Sobic003G072200 Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic003G072200--Sobic002G397500 Sobic007G098500 Sobic007G098500 Sobic003G072200--Sobic007G098500 Sobic007G062800 Sobic007G062800 Sobic003G072200--Sobic007G062800 Sobic003G233400 Sobic003G233400 Sobic003G072200--Sobic003G233400 Sobic009G084900 Sobic009G084900 Sobic003G072200--Sobic009G084900 Sobic008G098900 Sobic008G098900 Sobic003G072200--Sobic008G098900 Sobic005G112300 Sobic005G112300 Sobic003G072200--Sobic005G112300 Sobic001G347500 Sobic001G347500 Sobic003G072200--Sobic001G347500 Sobic002G133300 Sobic002G133300 Sobic003G072200--Sobic002G133300 Sobic003G408600 Sobic003G408600 Sobic002G397500--Sobic003G408600 Sobic002G397500--Sobic007G062800 Sobic002G397500--Sobic005G112300 Sobic001G540400 Sobic001G540400 Sobic002G397500--Sobic001G540400 Sobic009G109200 Sobic009G109200 Sobic002G397500--Sobic009G109200 Sobic002G397500--Sobic003G072200 Sobic004G242400 Sobic004G242400 Sobic002G397500--Sobic004G242400 Sobic004G276400 Sobic004G276400 Sobic002G397500--Sobic004G276400 Sobic010G112100 Sobic010G112100 Sobic002G397500--Sobic010G112100 Sobic008G092600 Sobic008G092600 Sobic007G098500--Sobic008G092600 Sobic002G396500 Sobic002G396500 Sobic007G098500--Sobic002G396500 Sobic010G105200 Sobic010G105200 Sobic007G098500--Sobic010G105200 Sobic007G098500--Sobic003G072200 Sobic001G050600 Sobic001G050600 Sobic007G098500--Sobic001G050600 Sobic001G137000 Sobic001G137000 Sobic007G098500--Sobic001G137000 Sobic007G098500--Sobic003G233400 Sobic001G287500 Sobic001G287500 Sobic007G098500--Sobic001G287500 Sobic006G265200 Sobic006G265200 Sobic007G098500--Sobic006G265200 Sobic007G062800--Sobic001G540400 Sobic007G062800--Sobic005G112300 Sobic002G405800 Sobic002G405800 Sobic007G062800--Sobic002G405800 Sobic002G008900 Sobic002G008900 Sobic007G062800--Sobic002G008900 Sobic010G010700 Sobic010G010700 Sobic007G062800--Sobic010G010700 Sobic007G062800--Sobic004G242400 Sobic004G034900 Sobic004G034900 Sobic007G062800--Sobic004G034900 Sobic007G062800--Sobic004G276400 Sobic007G062800--Sobic002G397500 Sobic003G233400--Sobic001G287500 Sobic003G233400--Sobic003G072200 Sobic003G233400--Sobic007G098500 Sobic003G233400--Sobic001G137000 Sobic003G312100 Sobic003G312100 Sobic003G233400--Sobic003G312100 Sobic003G233400--Sobic008G092600 Sobic003G233400--Sobic002G396500 Sobic002G179400 Sobic002G179400 Sobic003G233400--Sobic002G179400 Sobic004G051200 Sobic004G051200 Sobic003G233400--Sobic004G051200 Sobic010G059500 Sobic010G059500 Sobic009G084900--Sobic010G059500 Sobic009G084900--Sobic003G072200 Sobic001G493200 Sobic001G493200 Sobic009G084900--Sobic001G493200 Sobic001G433800 Sobic001G433800 Sobic009G084900--Sobic001G433800 Sobic009G131300 Sobic009G131300 Sobic009G084900--Sobic009G131300 Sobic009G084900--Sobic002G133300 Sobic006G077200 Sobic006G077200 Sobic009G084900--Sobic006G077200 Sobic008G082500 Sobic008G082500 Sobic009G084900--Sobic008G082500 Sobic004G260100 Sobic004G260100 Sobic009G084900--Sobic004G260100 Sobic001G370900 Sobic001G370900 Sobic008G098900--Sobic001G370900 Sobic008G085300 Sobic008G085300 Sobic008G098900--Sobic008G085300 Sobic001G117200 Sobic001G117200 Sobic008G098900--Sobic001G117200 Sobic003G205200 Sobic003G205200 Sobic008G098900--Sobic003G205200 Sobic005G001000 Sobic005G001000 Sobic008G098900--Sobic005G001000 Sobic008G098900--Sobic003G072200 Sobic005G162500 Sobic005G162500 Sobic008G098900--Sobic005G162500 Sobic002G042600 Sobic002G042600 Sobic008G098900--Sobic002G042600 Sobic008G098900--Sobic004G276400 Sobic001G363500 Sobic001G363500 Sobic005G112300--Sobic001G363500 Sobic005G112300--Sobic007G062800 Sobic005G112300--Sobic010G112100 Sobic010G139000 Sobic010G139000 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic005G112300--Sobic001G540400 Sobic005G112300--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic005G112300--Sobic005G008800 Sobic002G071500 Sobic002G071500 Sobic005G112300--Sobic002G071500 Sobic001G347500--Sobic003G072200 Sobic008G099800 Sobic008G099800 Sobic001G347500--Sobic008G099800 Sobic003G229500 Sobic003G229500 Sobic001G347500--Sobic003G229500 Sobic001G347500--Sobic009G084900 Sobic001G273700 Sobic001G273700 Sobic001G347500--Sobic001G273700 Sobic001G534800 Sobic001G534800 Sobic001G347500--Sobic001G534800 Sobic006G012500 Sobic006G012500 Sobic001G347500--Sobic006G012500 Sobic010G275500 Sobic010G275500 Sobic001G347500--Sobic010G275500 Sobic001G347500--Sobic007G098500 Sobic002G133300--Sobic004G276400 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic001G289800 Sobic001G289800 Sobic002G133300--Sobic001G289800 Sobic002G133300--Sobic003G072200 Sobic002G133300--Sobic002G397500 Sobic004G131300 Sobic004G131300 Sobic002G133300--Sobic004G131300 Sobic001G194200 Sobic001G194200 Sobic002G133300--Sobic001G194200 Sobic001G493700 Sobic001G493700 Sobic002G133300--Sobic001G493700
Octagon: transcription factors


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