Gene annotation
Transcriptome id Sobic.010G105200.1,Sobic.010G105200.2
Synonym SYD, CHR3
Functional annotation SYD, putative, expressed
UniProt A0A1W0VSE7 , A0A1W0VSF7
Pfam PF04851 PF00271 PF14619
Panther DB PTHR10799 PTHR10799:SF783
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G28290 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os06g14406.1 : SYD, putative, expressed
MaizeGDB (Corn) Zm00025a042723
Brachypodium KQK18705 , KQK18704
Barley HORVU7Hr1G041450.33 , HORVU7Hr1G041450.32 , HORVU7Hr1G041450.31 , HORVU7Hr1G041450.30 , HORVU7Hr1G041450.37 , HORVU7Hr1G041450.36 , HORVU7Hr1G041450.35 , HORVU7Hr1G041450.39 , HORVU7Hr1G041450.38 , HORVU7Hr1G041450.34 , HORVU7Hr1G041450.20 , HORVU7Hr1G041450.21 , HORVU7Hr1G041450.22 , HORVU7Hr1G041450.23 , HORVU7Hr1G041450.24 , HORVU7Hr1G041450.25 , HORVU7Hr1G041450.26 , HORVU7Hr1G041450.27 , HORVU7Hr1G041450.28 , HORVU7Hr1G041450.29 , HORVU7Hr1G041450.15 , HORVU7Hr1G041450.14 , HORVU7Hr1G041450.17 , HORVU7Hr1G041450.16 , HORVU7Hr1G041450.11 , HORVU7Hr1G041450.10 , HORVU7Hr1G041450.13 , HORVU7Hr1G041450.12 , HORVU7Hr1G041450.19 , HORVU7Hr1G041450.18 , HORVU7Hr1G041450.51 , HORVU7Hr1G041450.50 , HORVU7Hr1G041450.53 , HORVU7Hr1G041450.52 , HORVU7Hr1G041450.55 , HORVU7Hr1G041450.54 , HORVU7Hr1G041450.56 , HORVU7Hr1G041450.1 , HORVU7Hr1G041450.3 , HORVU7Hr1G041450.2 , HORVU7Hr1G041450.5 , HORVU7Hr1G041450.4 , HORVU7Hr1G041450.7 , HORVU7Hr1G041450.6 , HORVU7Hr1G041450.9 , HORVU7Hr1G041450.8 , HORVU7Hr1G041450.46 , HORVU7Hr1G041450.47 , HORVU7Hr1G041450.44 , HORVU7Hr1G041450.45 , HORVU7Hr1G041450.42 , HORVU7Hr1G041450.43 , HORVU7Hr1G041450.40 , HORVU7Hr1G041450.41 , HORVU7Hr1G041450.48 , HORVU7Hr1G041450.49
Wheat TraesCS7A02G203600 , TraesCS7D02G206700 , TraesCS7D02G206700 , TraesCS7D02G206700 , TraesCS7B02G110600
Populus PNT14229


JBrowse

Open New Page


cDNA sequences
Sobic.010G105200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
2 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
3 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
4 Sobic.007G098500 BIG, putative, expressed K10691: UBR4, E3 ubiquitin-protein ligase UBR4
5 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
6 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
7 Sobic.007G062800 SET domain containing protein, expressed -
8 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
9 Sobic.010G010700 PHD-finger family protein, expressed -
10 Sobic.001G540400 expressed protein -
11 Sobic.002G396500 FAT domain-containing protein, putative, expressed K08874: transformation/transcription domain-associated protein
12 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
13 Sobic.009G256300 DNA binding protein, putative, expressed -
14 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
15 Sobic.001G289800 BAH domain containing protein, putative, expressed -
16 Sobic.001G542400 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
17 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
18 Sobic.001G299700 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
19 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
20 Sobic.002G397500 SAC3/GANP family protein, expressed -


Gene co-expression network
sample Sobic010G105200 Sobic010G105200 Sobic004G276400 Sobic004G276400 Sobic010G105200--Sobic004G276400 Sobic009G109200 Sobic009G109200 Sobic010G105200--Sobic009G109200 Sobic003G186000 Sobic003G186000 Sobic010G105200--Sobic003G186000 Sobic007G098500 Sobic007G098500 Sobic010G105200--Sobic007G098500 Sobic004G242400 Sobic004G242400 Sobic010G105200--Sobic004G242400 Sobic004G034900 Sobic004G034900 Sobic010G105200--Sobic004G034900 Sobic007G062800 Sobic007G062800 Sobic010G105200--Sobic007G062800 Sobic005G008800 Sobic005G008800 Sobic010G105200--Sobic005G008800 Sobic010G010700 Sobic010G010700 Sobic010G105200--Sobic010G010700 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic004G276400--Sobic010G105200 Sobic001G194200 Sobic001G194200 Sobic004G276400--Sobic001G194200 Sobic004G276400--Sobic004G034900 Sobic004G276400--Sobic007G062800 Sobic004G291900 Sobic004G291900 Sobic004G276400--Sobic004G291900 Sobic004G276400--Sobic004G242400 Sobic008G001200 Sobic008G001200 Sobic004G276400--Sobic008G001200 Sobic009G109200--Sobic010G105200 Sobic009G109200--Sobic004G242400 Sobic002G397500 Sobic002G397500 Sobic009G109200--Sobic002G397500 Sobic001G542400 Sobic001G542400 Sobic009G109200--Sobic001G542400 Sobic001G540400 Sobic001G540400 Sobic009G109200--Sobic001G540400 Sobic009G109200--Sobic005G008800 Sobic009G109200--Sobic004G276400 Sobic003G408600 Sobic003G408600 Sobic009G109200--Sobic003G408600 Sobic010G112100 Sobic010G112100 Sobic009G109200--Sobic010G112100 Sobic003G186000--Sobic004G276400 Sobic003G186000--Sobic010G105200 Sobic003G186000--Sobic010G010700 Sobic005G001000 Sobic005G001000 Sobic003G186000--Sobic005G001000 Sobic003G205200 Sobic003G205200 Sobic003G186000--Sobic003G205200 Sobic003G186000--Sobic001G194200 Sobic003G186000--Sobic007G062800 Sobic003G186000--Sobic008G001200 Sobic007G103100 Sobic007G103100 Sobic003G186000--Sobic007G103100 Sobic008G092600 Sobic008G092600 Sobic007G098500--Sobic008G092600 Sobic002G396500 Sobic002G396500 Sobic007G098500--Sobic002G396500 Sobic007G098500--Sobic010G105200 Sobic003G072200 Sobic003G072200 Sobic007G098500--Sobic003G072200 Sobic001G050600 Sobic001G050600 Sobic007G098500--Sobic001G050600 Sobic001G137000 Sobic001G137000 Sobic007G098500--Sobic001G137000 Sobic003G233400 Sobic003G233400 Sobic007G098500--Sobic003G233400 Sobic001G287500 Sobic001G287500 Sobic007G098500--Sobic001G287500 Sobic006G265200 Sobic006G265200 Sobic007G098500--Sobic006G265200 Sobic004G242400--Sobic007G062800 Sobic004G242400--Sobic009G109200 Sobic004G242400--Sobic010G105200 Sobic004G242400--Sobic004G276400 Sobic004G242400--Sobic010G010700 Sobic004G242400--Sobic010G112100 Sobic004G314000 Sobic004G314000 Sobic004G242400--Sobic004G314000 Sobic009G256300 Sobic009G256300 Sobic004G242400--Sobic009G256300 Sobic001G433800 Sobic001G433800 Sobic004G242400--Sobic001G433800 Sobic001G289600 Sobic001G289600 Sobic004G034900--Sobic001G289600 Sobic010G206900 Sobic010G206900 Sobic004G034900--Sobic010G206900 Sobic004G034900--Sobic010G010700 Sobic002G411600 Sobic002G411600 Sobic004G034900--Sobic002G411600 Sobic004G034900--Sobic001G540400 Sobic003G422500 Sobic003G422500 Sobic004G034900--Sobic003G422500 Sobic004G034900--Sobic004G276400 Sobic002G008900 Sobic002G008900 Sobic004G034900--Sobic002G008900 Sobic004G034900--Sobic007G062800 Sobic007G062800--Sobic001G540400 Sobic005G112300 Sobic005G112300 Sobic007G062800--Sobic005G112300 Sobic002G405800 Sobic002G405800 Sobic007G062800--Sobic002G405800 Sobic007G062800--Sobic002G008900 Sobic007G062800--Sobic010G010700 Sobic007G062800--Sobic004G242400 Sobic007G062800--Sobic004G034900 Sobic007G062800--Sobic004G276400 Sobic007G062800--Sobic002G397500 Sobic005G008800--Sobic001G540400 Sobic005G008800--Sobic003G408600 Sobic005G008800--Sobic005G112300 Sobic005G008800--Sobic007G062800 Sobic005G008800--Sobic001G289600 Sobic005G008800--Sobic004G314000 Sobic008G009700 Sobic008G009700 Sobic005G008800--Sobic008G009700 Sobic001G289800 Sobic001G289800 Sobic005G008800--Sobic001G289800 Sobic005G008800--Sobic009G109200 Sobic010G010700--Sobic010G206900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic010G010700--Sobic001G194200 Sobic010G010700--Sobic007G062800 Sobic010G010700--Sobic002G008900 Sobic010G010700--Sobic005G112300 Sobic010G010700--Sobic008G001200 Sobic010G010700--Sobic003G186000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.