Gene annotation
Transcriptome id Sobic.001G540400.2
Synonym CRP, CCT, Sb01g050280
Functional annotation expressed protein
UniProt C5WMR6
Pfam PF09497
Panther DB PTHR13992 PTHR13992:SF25
NCBI CDD KOG4522; RNA polymerase II transcription mediator
KEGG Orthology -
Gene Ontology GO:0016592; mediator complex GO:0006357regulation of transcription by RNA polymerase II GO:0001104transcription coregulator activity


Orthologs (automatic annotation)
TAIR AT4G00450 : RNA polymerase II transcription mediators
RAP-DB (Rice) LOC_Os07g45400.1 : expressed protein
MaizeGDB (Corn) Zm00025a050752 , Zm00025a000136 , Zm00025a044091 , Zm00025a053582 , Zm00025a015553 , Zm00025a040712 , Zm00025a027989
Brachypodium KQK15196
Barley HORVU4Hr1G087360.8 , HORVU4Hr1G087360.9 , HORVU4Hr1G087360.2 , HORVU4Hr1G087360.3 , HORVU4Hr1G087360.1 , HORVU4Hr1G087360.6 , HORVU4Hr1G087360.7 , HORVU4Hr1G087360.4 , HORVU4Hr1G087360.5 , HORVU4Hr1G087360.10 , HORVU4Hr1G087360.11 , HORVU4Hr1G087360.12 , HORVU4Hr1G087360.13
Wheat TraesCSU02G139500 , TraesCS5A02G532500 , TraesCS4B02G364200 , TraesCS5A02G532500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G289600 BAH domain containing protein, putative, expressed -
2 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
3 Sobic.007G062800 SET domain containing protein, expressed -
4 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
5 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
6 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
7 Sobic.003G422500 expressed protein -
8 Sobic.002G397500 SAC3/GANP family protein, expressed -
9 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
10 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
11 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
12 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
13 Sobic.001G289800 BAH domain containing protein, putative, expressed -
14 Sobic.001G365900 PWWP domain containing protein, expressed -
15 Sobic.010G010700 PHD-finger family protein, expressed -
16 Sobic.003G313500 MATH domain containing protein, expressed -
17 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
18 Sobic.002G411600 CW-type Zinc Finger, putative, expressed -
19 Sobic.003G101400 transcriptional repressor, putative, expressed K11644: paired amphipathic helix protein Sin3a
20 Sobic.010G002100 expressed protein K15164: mediator of RNA polymerase II transcription subunit 13


Gene co-expression network
sample Sobic001G540400 Sobic001G540400 Sobic001G289600 Sobic001G289600 Sobic001G540400--Sobic001G289600 Sobic003G408600 Sobic003G408600 Sobic001G540400--Sobic003G408600 Sobic007G062800 Sobic007G062800 Sobic001G540400--Sobic007G062800 Sobic005G008800 Sobic005G008800 Sobic001G540400--Sobic005G008800 Sobic004G034900 Sobic004G034900 Sobic001G540400--Sobic004G034900 Sobic005G112300 Sobic005G112300 Sobic001G540400--Sobic005G112300 Sobic003G422500 Sobic003G422500 Sobic001G540400--Sobic003G422500 Sobic002G397500 Sobic002G397500 Sobic001G540400--Sobic002G397500 Sobic010G112100 Sobic010G112100 Sobic001G540400--Sobic010G112100 Sobic001G289600--Sobic001G540400 Sobic001G289600--Sobic004G034900 Sobic001G289800 Sobic001G289800 Sobic001G289600--Sobic001G289800 Sobic001G289600--Sobic003G422500 Sobic001G365900 Sobic001G365900 Sobic001G289600--Sobic001G365900 Sobic009G191000 Sobic009G191000 Sobic001G289600--Sobic009G191000 Sobic001G289600--Sobic005G008800 Sobic007G105100 Sobic007G105100 Sobic001G289600--Sobic007G105100 Sobic010G010700 Sobic010G010700 Sobic001G289600--Sobic010G010700 Sobic003G408600--Sobic001G540400 Sobic003G408600--Sobic005G008800 Sobic003G408600--Sobic002G397500 Sobic003G408600--Sobic005G112300 Sobic007G163100 Sobic007G163100 Sobic003G408600--Sobic007G163100 Sobic003G408600--Sobic010G112100 Sobic001G058700 Sobic001G058700 Sobic003G408600--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic003G408600--Sobic002G071500 Sobic002G045600 Sobic002G045600 Sobic003G408600--Sobic002G045600 Sobic007G062800--Sobic001G540400 Sobic007G062800--Sobic005G112300 Sobic002G405800 Sobic002G405800 Sobic007G062800--Sobic002G405800 Sobic002G008900 Sobic002G008900 Sobic007G062800--Sobic002G008900 Sobic007G062800--Sobic010G010700 Sobic004G242400 Sobic004G242400 Sobic007G062800--Sobic004G242400 Sobic007G062800--Sobic004G034900 Sobic004G276400 Sobic004G276400 Sobic007G062800--Sobic004G276400 Sobic007G062800--Sobic002G397500 Sobic005G008800--Sobic001G540400 Sobic005G008800--Sobic003G408600 Sobic005G008800--Sobic005G112300 Sobic005G008800--Sobic007G062800 Sobic005G008800--Sobic001G289600 Sobic004G314000 Sobic004G314000 Sobic005G008800--Sobic004G314000 Sobic008G009700 Sobic008G009700 Sobic005G008800--Sobic008G009700 Sobic005G008800--Sobic001G289800 Sobic009G109200 Sobic009G109200 Sobic005G008800--Sobic009G109200 Sobic004G034900--Sobic001G289600 Sobic010G206900 Sobic010G206900 Sobic004G034900--Sobic010G206900 Sobic004G034900--Sobic010G010700 Sobic002G411600 Sobic002G411600 Sobic004G034900--Sobic002G411600 Sobic004G034900--Sobic001G540400 Sobic004G034900--Sobic003G422500 Sobic004G034900--Sobic004G276400 Sobic004G034900--Sobic002G008900 Sobic004G034900--Sobic007G062800 Sobic001G363500 Sobic001G363500 Sobic005G112300--Sobic001G363500 Sobic005G112300--Sobic007G062800 Sobic005G112300--Sobic010G112100 Sobic010G139000 Sobic010G139000 Sobic005G112300--Sobic010G139000 Sobic005G112300--Sobic007G105100 Sobic005G112300--Sobic001G540400 Sobic005G112300--Sobic010G010700 Sobic005G112300--Sobic005G008800 Sobic005G112300--Sobic002G071500 Sobic003G422500--Sobic002G411600 Sobic003G422500--Sobic009G191000 Sobic003G422500--Sobic001G289600 Sobic009G165700 Sobic009G165700 Sobic003G422500--Sobic009G165700 Sobic003G422500--Sobic002G008900 Sobic003G422500--Sobic004G034900 Sobic003G422500--Sobic001G289800 Sobic003G422500--Sobic001G540400 Sobic008G132600 Sobic008G132600 Sobic003G422500--Sobic008G132600 Sobic002G397500--Sobic003G408600 Sobic002G397500--Sobic007G062800 Sobic002G397500--Sobic005G112300 Sobic002G397500--Sobic001G540400 Sobic002G397500--Sobic009G109200 Sobic003G072200 Sobic003G072200 Sobic002G397500--Sobic003G072200 Sobic002G397500--Sobic004G242400 Sobic002G397500--Sobic004G276400 Sobic002G397500--Sobic010G112100 Sobic003G360400 Sobic003G360400 Sobic010G112100--Sobic003G360400 Sobic010G112100--Sobic005G112300 Sobic009G256300 Sobic009G256300 Sobic010G112100--Sobic009G256300 Sobic010G112100--Sobic003G408600 Sobic001G433800 Sobic001G433800 Sobic010G112100--Sobic001G433800 Sobic010G112100--Sobic001G540400 Sobic010G112100--Sobic007G062800 Sobic010G112100--Sobic004G242400 Sobic003G389200 Sobic003G389200 Sobic010G112100--Sobic003G389200
Octagon: transcription factors


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