Gene annotation
Transcriptome id Sobic.010G002100.1
Synonym Sb10g000410, GCT
Functional annotation expressed protein
UniProt C5Z232
Pfam PF06333
Panther DB PTHR10791 PTHR10791:SF60
NCBI CDD -
KEGG Orthology K15164; mediator of RNA polymerase II transcription subunit 13
Gene Ontology GO:0016592; mediator complex GO:0006357regulation of transcription by RNA polymerase II GO:0001104transcription coregulator activity


Orthologs (automatic annotation)
TAIR AT1G55325 : RNA polymerase II transcription mediators
RAP-DB (Rice) LOC_Os05g37500.1 : expressed protein
MaizeGDB (Corn) Zm00025a050333
Brachypodium KQK20004 , PNT76698 , PNT76699 , PNT76697 , PNT76700
Barley HORVU5Hr1G125050.8 , HORVU5Hr1G125050.9 , HORVU5Hr1G125050.6 , HORVU5Hr1G125050.7 , HORVU5Hr1G125050.4 , HORVU5Hr1G125050.5 , HORVU5Hr1G125050.2 , HORVU5Hr1G125050.3 , HORVU5Hr1G125050.1 , HORVU2Hr1G110410.28 , HORVU2Hr1G110410.29 , HORVU2Hr1G110410.24 , HORVU2Hr1G110410.25 , HORVU2Hr1G110410.26 , HORVU2Hr1G110410.27 , HORVU2Hr1G110410.20 , HORVU2Hr1G110410.21 , HORVU2Hr1G110410.22 , HORVU2Hr1G110410.23 , HORVU2Hr1G110410.11 , HORVU2Hr1G110410.10 , HORVU2Hr1G110410.13 , HORVU2Hr1G110410.12 , HORVU2Hr1G110410.15 , HORVU2Hr1G110410.14 , HORVU2Hr1G110410.17 , HORVU2Hr1G110410.16 , HORVU2Hr1G110410.19 , HORVU2Hr1G110410.18 , HORVU2Hr1G110410.5 , HORVU2Hr1G110410.4 , HORVU2Hr1G110410.7 , HORVU2Hr1G110410.6 , HORVU2Hr1G110410.1 , HORVU2Hr1G110410.3 , HORVU2Hr1G110410.2 , HORVU2Hr1G110410.9 , HORVU2Hr1G110410.8 , HORVU5Hr1G125050.14 , HORVU5Hr1G125050.15 , HORVU5Hr1G125050.16 , HORVU5Hr1G125050.17 , HORVU5Hr1G125050.10 , HORVU5Hr1G125050.11 , HORVU5Hr1G125050.12 , HORVU5Hr1G125050.13 , HORVU5Hr1G125050.18 , HORVU5Hr1G125050.19 , HORVU5Hr1G125050.29 , HORVU5Hr1G125050.28 , HORVU5Hr1G125050.21 , HORVU5Hr1G125050.20 , HORVU5Hr1G125050.23 , HORVU5Hr1G125050.22 , HORVU5Hr1G125050.25 , HORVU5Hr1G125050.24 , HORVU5Hr1G125050.27 , HORVU5Hr1G125050.26 , HORVU5Hr1G125050.30 , HORVU5Hr1G125050.31 , HORVU2Hr1G110410.34 , HORVU2Hr1G110410.33 , HORVU2Hr1G110410.32 , HORVU2Hr1G110410.31 , HORVU2Hr1G110410.30
Wheat TraesCS2A02G494700 , TraesCS4A02G315800 , TraesCS4A02G315800 , TraesCS5B02G563700 , TraesCS5B02G563700 , TraesCS5B02G563700 , TraesCS5B02G563700 , TraesCS5B02G563700 , TraesCS5D02G551300 , TraesCS5D02G551300 , TraesCS2D02G494900 , TraesCS2D02G494900 , TraesCS2B02G522900 , TraesCS2B02G522900 , TraesCS2A02G494700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
2 Sobic.001G540400 expressed protein -
3 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
4 Sobic.002G397500 SAC3/GANP family protein, expressed -
5 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
6 Sobic.007G062800 SET domain containing protein, expressed -
7 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
8 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
9 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
10 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
11 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
12 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
13 Sobic.001G289600 BAH domain containing protein, putative, expressed -
14 Sobic.002G405800 PHD-finger family protein, expressed -
15 Sobic.010G105200 SYD, putative, expressed -
16 Sobic.001G280900 expressed protein -
17 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
18 Sobic.010G201500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
19 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
20 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3


Gene co-expression network
sample Sobic010G002100 Sobic010G002100 Sobic008G009700 Sobic008G009700 Sobic010G002100--Sobic008G009700 Sobic001G540400 Sobic001G540400 Sobic010G002100--Sobic001G540400 Sobic005G112300 Sobic005G112300 Sobic010G002100--Sobic005G112300 Sobic002G397500 Sobic002G397500 Sobic010G002100--Sobic002G397500 Sobic005G008800 Sobic005G008800 Sobic010G002100--Sobic005G008800 Sobic007G062800 Sobic007G062800 Sobic010G002100--Sobic007G062800 Sobic002G071500 Sobic002G071500 Sobic010G002100--Sobic002G071500 Sobic002G309600 Sobic002G309600 Sobic010G002100--Sobic002G309600 Sobic004G034900 Sobic004G034900 Sobic010G002100--Sobic004G034900 Sobic008G009700--Sobic002G309600 Sobic008G009700--Sobic005G008800 Sobic008G009700--Sobic005G112300 Sobic007G065400 Sobic007G065400 Sobic008G009700--Sobic007G065400 Sobic008G009700--Sobic002G071500 Sobic008G009700--Sobic010G002100 Sobic002G153700 Sobic002G153700 Sobic008G009700--Sobic002G153700 Sobic010G065300 Sobic010G065300 Sobic008G009700--Sobic010G065300 Sobic001G241200 Sobic001G241200 Sobic008G009700--Sobic001G241200 Sobic001G289600 Sobic001G289600 Sobic001G540400--Sobic001G289600 Sobic003G408600 Sobic003G408600 Sobic001G540400--Sobic003G408600 Sobic001G540400--Sobic007G062800 Sobic001G540400--Sobic005G008800 Sobic001G540400--Sobic004G034900 Sobic001G540400--Sobic005G112300 Sobic003G422500 Sobic003G422500 Sobic001G540400--Sobic003G422500 Sobic001G540400--Sobic002G397500 Sobic010G112100 Sobic010G112100 Sobic001G540400--Sobic010G112100 Sobic001G363500 Sobic001G363500 Sobic005G112300--Sobic001G363500 Sobic005G112300--Sobic007G062800 Sobic005G112300--Sobic010G112100 Sobic010G139000 Sobic010G139000 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic005G112300--Sobic001G540400 Sobic010G010700 Sobic010G010700 Sobic005G112300--Sobic010G010700 Sobic005G112300--Sobic005G008800 Sobic005G112300--Sobic002G071500 Sobic002G397500--Sobic003G408600 Sobic002G397500--Sobic007G062800 Sobic002G397500--Sobic005G112300 Sobic002G397500--Sobic001G540400 Sobic009G109200 Sobic009G109200 Sobic002G397500--Sobic009G109200 Sobic003G072200 Sobic003G072200 Sobic002G397500--Sobic003G072200 Sobic004G242400 Sobic004G242400 Sobic002G397500--Sobic004G242400 Sobic004G276400 Sobic004G276400 Sobic002G397500--Sobic004G276400 Sobic002G397500--Sobic010G112100 Sobic005G008800--Sobic001G540400 Sobic005G008800--Sobic003G408600 Sobic005G008800--Sobic005G112300 Sobic005G008800--Sobic007G062800 Sobic005G008800--Sobic001G289600 Sobic004G314000 Sobic004G314000 Sobic005G008800--Sobic004G314000 Sobic005G008800--Sobic008G009700 Sobic001G289800 Sobic001G289800 Sobic005G008800--Sobic001G289800 Sobic005G008800--Sobic009G109200 Sobic007G062800--Sobic001G540400 Sobic007G062800--Sobic005G112300 Sobic002G405800 Sobic002G405800 Sobic007G062800--Sobic002G405800 Sobic002G008900 Sobic002G008900 Sobic007G062800--Sobic002G008900 Sobic007G062800--Sobic010G010700 Sobic007G062800--Sobic004G242400 Sobic007G062800--Sobic004G034900 Sobic007G062800--Sobic004G276400 Sobic007G062800--Sobic002G397500 Sobic002G071500--Sobic005G112300 Sobic002G071500--Sobic003G408600 Sobic002G071500--Sobic008G009700 Sobic010G116600 Sobic010G116600 Sobic002G071500--Sobic010G116600 Sobic001G026200 Sobic001G026200 Sobic002G071500--Sobic001G026200 Sobic002G071500--Sobic002G153700 Sobic010G069100 Sobic010G069100 Sobic002G071500--Sobic010G069100 Sobic003G119000 Sobic003G119000 Sobic002G071500--Sobic003G119000 Sobic010G201500 Sobic010G201500 Sobic002G071500--Sobic010G201500 Sobic003G280800 Sobic003G280800 Sobic002G309600--Sobic003G280800 Sobic002G134200 Sobic002G134200 Sobic002G309600--Sobic002G134200 Sobic007G117400 Sobic007G117400 Sobic002G309600--Sobic007G117400 Sobic002G309600--Sobic008G009700 Sobic001G071400 Sobic001G071400 Sobic002G309600--Sobic001G071400 Sobic002G309600--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic002G309600--Sobic004G065100 Sobic001G154900 Sobic001G154900 Sobic002G309600--Sobic001G154900 Sobic002G006900 Sobic002G006900 Sobic002G309600--Sobic002G006900 Sobic004G034900--Sobic001G289600 Sobic010G206900 Sobic010G206900 Sobic004G034900--Sobic010G206900 Sobic004G034900--Sobic010G010700 Sobic002G411600 Sobic002G411600 Sobic004G034900--Sobic002G411600 Sobic004G034900--Sobic001G540400 Sobic004G034900--Sobic003G422500 Sobic004G034900--Sobic004G276400 Sobic004G034900--Sobic002G008900 Sobic004G034900--Sobic007G062800
Octagon: transcription factors


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