Gene annotation
Transcriptome id Sobic.010G201500.4,Sobic.010G201500.5,Sobic.010G201500.6
Synonym Sb10g024960
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt A0A1W0VU23 , A0A1W0VU13 , A0A1W0VTY8
Pfam -
Panther DB PTHR23102 PTHR23102:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G21580 : Zinc finger C-x8-C-x5-C-x3-H type family protein
RAP-DB (Rice) LOC_Os06g43120.1 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a051431
Brachypodium KQK16732 , PNT75322
Barley HORVU7Hr1G116690.1 , HORVU7Hr1G116690.10 , HORVU7Hr1G116690.11 , HORVU7Hr1G116690.8 , HORVU7Hr1G116690.9 , HORVU7Hr1G116690.4 , HORVU7Hr1G116690.5 , HORVU7Hr1G116690.6 , HORVU7Hr1G116690.7 , HORVU7Hr1G116690.2 , HORVU7Hr1G116690.3 , HORVU7Hr1G116690.16 , HORVU7Hr1G116690.14 , HORVU7Hr1G116690.15 , HORVU7Hr1G116690.13
Wheat TraesCS7A02G525900 , TraesCS7B02G443500 , TraesCS7D02G514700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
2 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
3 Sobic.004G271000 expressed protein -
4 Sobic.003G372700 expressed protein -
5 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
6 Sobic.002G191800 - -
7 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
8 Sobic.010G069100 expressed protein -
9 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
10 Sobic.004G138000 expressed protein -
11 Sobic.008G153000 MATH domain containing protein, expressed -
12 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
13 Sobic.001G290100 expressed protein -
14 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
15 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3
16 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
17 Sobic.009G166300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
18 Sobic.005G118600 NB-ARC domain containing protein, expressed -
19 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
20 Sobic.010G002100 expressed protein K15164: mediator of RNA polymerase II transcription subunit 13


Gene co-expression network
sample Sobic010G201500 Sobic010G201500 Sobic002G071500 Sobic002G071500 Sobic010G201500--Sobic002G071500 Sobic007G065400 Sobic007G065400 Sobic010G201500--Sobic007G065400 Sobic004G271000 Sobic004G271000 Sobic010G201500--Sobic004G271000 Sobic003G372700 Sobic003G372700 Sobic010G201500--Sobic003G372700 Sobic002G006900 Sobic002G006900 Sobic010G201500--Sobic002G006900 Sobic002G191800 Sobic002G191800 Sobic010G201500--Sobic002G191800 Sobic010G065300 Sobic010G065300 Sobic010G201500--Sobic010G065300 Sobic010G069100 Sobic010G069100 Sobic010G201500--Sobic010G069100 Sobic001G155000 Sobic001G155000 Sobic010G201500--Sobic001G155000 Sobic005G112300 Sobic005G112300 Sobic002G071500--Sobic005G112300 Sobic003G408600 Sobic003G408600 Sobic002G071500--Sobic003G408600 Sobic008G009700 Sobic008G009700 Sobic002G071500--Sobic008G009700 Sobic010G116600 Sobic010G116600 Sobic002G071500--Sobic010G116600 Sobic001G026200 Sobic001G026200 Sobic002G071500--Sobic001G026200 Sobic002G153700 Sobic002G153700 Sobic002G071500--Sobic002G153700 Sobic002G071500--Sobic010G069100 Sobic003G119000 Sobic003G119000 Sobic002G071500--Sobic003G119000 Sobic002G071500--Sobic010G201500 Sobic007G065400--Sobic002G006900 Sobic007G065400--Sobic002G191800 Sobic007G065400--Sobic008G009700 Sobic009G040600 Sobic009G040600 Sobic007G065400--Sobic009G040600 Sobic004G145500 Sobic004G145500 Sobic007G065400--Sobic004G145500 Sobic009G210500 Sobic009G210500 Sobic007G065400--Sobic009G210500 Sobic007G065400--Sobic003G119000 Sobic007G065400--Sobic003G372700 Sobic008G028700 Sobic008G028700 Sobic007G065400--Sobic008G028700 Sobic004G213000 Sobic004G213000 Sobic004G271000--Sobic004G213000 Sobic004G271000--Sobic010G201500 Sobic006G032400 Sobic006G032400 Sobic004G271000--Sobic006G032400 Sobic004G271000--Sobic010G069100 Sobic002G248400 Sobic002G248400 Sobic004G271000--Sobic002G248400 Sobic001G206100 Sobic001G206100 Sobic004G271000--Sobic001G206100 Sobic007G000100 Sobic007G000100 Sobic004G271000--Sobic007G000100 Sobic008G067600 Sobic008G067600 Sobic004G271000--Sobic008G067600 Sobic003G397800 Sobic003G397800 Sobic004G271000--Sobic003G397800 Sobic003G372700--Sobic002G006900 Sobic003G372700--Sobic003G119000 Sobic003G372700--Sobic007G065400 Sobic003G372700--Sobic005G112300 Sobic003G372700--Sobic002G191800 Sobic003G372700--Sobic009G040600 Sobic002G309600 Sobic002G309600 Sobic003G372700--Sobic002G309600 Sobic003G280800 Sobic003G280800 Sobic003G372700--Sobic003G280800 Sobic001G474600 Sobic001G474600 Sobic003G372700--Sobic001G474600 Sobic008G047800 Sobic008G047800 Sobic002G006900--Sobic008G047800 Sobic002G006900--Sobic007G065400 Sobic003G200200 Sobic003G200200 Sobic002G006900--Sobic003G200200 Sobic002G006900--Sobic003G372700 Sobic002G006900--Sobic009G040600 Sobic002G006900--Sobic001G155000 Sobic002G006900--Sobic002G309600 Sobic001G214300 Sobic001G214300 Sobic002G006900--Sobic001G214300 Sobic001G512700 Sobic001G512700 Sobic002G006900--Sobic001G512700 Sobic002G191800--Sobic007G065400 Sobic002G191800--Sobic003G372700 Sobic002G180666 Sobic002G180666 Sobic002G191800--Sobic002G180666 Sobic002G191800--Sobic002G006900 Sobic002G191800--Sobic010G201500 Sobic001G241200 Sobic001G241200 Sobic002G191800--Sobic001G241200 Sobic007G096600 Sobic007G096600 Sobic002G191800--Sobic007G096600 Sobic010G277500 Sobic010G277500 Sobic002G191800--Sobic010G277500 Sobic002G191800--Sobic003G119000 Sobic010G001100 Sobic010G001100 Sobic010G065300--Sobic010G001100 Sobic010G065300--Sobic008G009700 Sobic010G065300--Sobic002G153700 Sobic001G306900 Sobic001G306900 Sobic010G065300--Sobic001G306900 Sobic001G134300 Sobic001G134300 Sobic010G065300--Sobic001G134300 Sobic003G293200 Sobic003G293200 Sobic010G065300--Sobic003G293200 Sobic009G119000 Sobic009G119000 Sobic010G065300--Sobic009G119000 Sobic004G156500 Sobic004G156500 Sobic010G065300--Sobic004G156500 Sobic004G048800 Sobic004G048800 Sobic010G065300--Sobic004G048800 Sobic010G069100--Sobic002G071500 Sobic002G264200 Sobic002G264200 Sobic010G069100--Sobic002G264200 Sobic010G069100--Sobic005G112300 Sobic010G069100--Sobic008G047800 Sobic010G069100--Sobic008G009700 Sobic001G154900 Sobic001G154900 Sobic010G069100--Sobic001G154900 Sobic004G146500 Sobic004G146500 Sobic010G069100--Sobic004G146500 Sobic010G069100--Sobic007G065400 Sobic009G005500 Sobic009G005500 Sobic010G069100--Sobic009G005500 Sobic001G155000--Sobic008G047800 Sobic001G155000--Sobic002G006900 Sobic001G155000--Sobic003G200200 Sobic001G155000--Sobic009G040600 Sobic001G222500 Sobic001G222500 Sobic001G155000--Sobic001G222500 Sobic007G011300 Sobic007G011300 Sobic001G155000--Sobic007G011300 Sobic008G153000 Sobic008G153000 Sobic001G155000--Sobic008G153000 Sobic010G053800 Sobic010G053800 Sobic001G155000--Sobic010G053800 Sobic007G217000 Sobic007G217000 Sobic001G155000--Sobic007G217000
Octagon: transcription factors


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