Gene annotation
Transcriptome id Sobic.001G155000.1
Synonym RPB2, EMB1989, NRPB2, Sb01g013470
Functional annotation DNA-directed RNA polymerase II subunit RPB2, putative, expressed
UniProt A0A1B6QJ46
Pfam PF04567 PF04566 PF04565 PF04560 PF04561 PF04563 PF00562
Panther DB PTHR20856 PTHR20856:SF7
NCBI CDD -
KEGG Orthology K03010; RPB2, DNA-directed RNA polymerase II subunit RPB2
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT4G21710 : DNA-directed RNA polymerase family protein
RAP-DB (Rice) LOC_Os03g44484.2 : DNA-directed RNA polymerase II subunit RPB2, putative, expressed
MaizeGDB (Corn) Zm00025a030841 , Zm00025a017250 , Zm00025a055369 , Zm00025a007258 , Zm00025a046630 , Zm00025a058118
Brachypodium KQK13978
Barley HORVU5Hr1G092840.27 , HORVU5Hr1G092840.26 , HORVU5Hr1G092840.25 , HORVU5Hr1G092840.24 , HORVU5Hr1G092840.23 , HORVU5Hr1G092840.22 , HORVU5Hr1G092840.21 , HORVU5Hr1G092840.20 , HORVU5Hr1G092840.29 , HORVU5Hr1G092840.28 , HORVU5Hr1G092840.3 , HORVU5Hr1G092840.9 , HORVU5Hr1G092840.34 , HORVU5Hr1G092840.35 , HORVU5Hr1G092840.30 , HORVU5Hr1G092840.31 , HORVU5Hr1G092840.32 , HORVU5Hr1G092840.33 , HORVU5Hr1G092840.8 , HORVU5Hr1G092840.18 , HORVU5Hr1G092840.19 , HORVU5Hr1G092840.16 , HORVU5Hr1G092840.17 , HORVU5Hr1G092840.14 , HORVU5Hr1G092840.15 , HORVU5Hr1G092840.12 , HORVU5Hr1G092840.13 , HORVU5Hr1G092840.10 , HORVU5Hr1G092840.11 , HORVU5Hr1G092840.4 , HORVU5Hr1G092840.5 , HORVU5Hr1G092840.6 , HORVU5Hr1G092840.7 , HORVU5Hr1G092840.1 , HORVU5Hr1G092840.2
Wheat TraesCS5D02G383900 , TraesCS5D02G383900 , TraesCS5D02G383900 , TraesCS5B02G376200 , TraesCS5B02G376200 , TraesCS5A02G374300 , TraesCS5A02G374300 , TraesCS5A02G374300
Populus PNT39534 , PNT39535 , PNT39532 , PNT39533 , PNT39531


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cDNA sequences
Sobic.001G155000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
2 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
3 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
4 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
5 Sobic.001G222500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
6 Sobic.007G011300 SGR2, putative, expressed -
7 Sobic.008G153000 MATH domain containing protein, expressed -
8 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
9 Sobic.007G217000 tetratricopeptide repeat domain containing protein, expressed K13342: PEX5, peroxin-5
10 Sobic.010G069100 expressed protein -
11 Sobic.006G165000 RNA recognition motif containing protein, expressed -
12 Sobic.010G101800 dynamin, putative, expressed K01528: dynamin 1/3
13 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
14 Sobic.010G275500 EF hand family protein, putative, expressed -
15 Sobic.002G297200 ZOS9-19 - C2H2 zinc finger protein, expressed -
16 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
17 Sobic.004G146500 ataxin-2 related protein, putative, expressed -
18 Sobic.003G401000 adaptin, putative, expressed K12400: AP-4 complex subunit epsilon-1
19 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
20 Sobic.010G201500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -


Gene co-expression network
sample Sobic001G155000 Sobic001G155000 Sobic008G047800 Sobic008G047800 Sobic001G155000--Sobic008G047800 Sobic002G006900 Sobic002G006900 Sobic001G155000--Sobic002G006900 Sobic003G200200 Sobic003G200200 Sobic001G155000--Sobic003G200200 Sobic009G040600 Sobic009G040600 Sobic001G155000--Sobic009G040600 Sobic001G222500 Sobic001G222500 Sobic001G155000--Sobic001G222500 Sobic007G011300 Sobic007G011300 Sobic001G155000--Sobic007G011300 Sobic008G153000 Sobic008G153000 Sobic001G155000--Sobic008G153000 Sobic010G053800 Sobic010G053800 Sobic001G155000--Sobic010G053800 Sobic007G217000 Sobic007G217000 Sobic001G155000--Sobic007G217000 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic008G047800--Sobic001G155000 Sobic008G047800--Sobic009G040600 Sobic008G047800--Sobic007G011300 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600 Sobic002G006900--Sobic008G047800 Sobic007G065400 Sobic007G065400 Sobic002G006900--Sobic007G065400 Sobic002G006900--Sobic003G200200 Sobic003G372700 Sobic003G372700 Sobic002G006900--Sobic003G372700 Sobic002G006900--Sobic009G040600 Sobic002G006900--Sobic001G155000 Sobic002G006900--Sobic002G309600 Sobic001G214300 Sobic001G214300 Sobic002G006900--Sobic001G214300 Sobic002G006900--Sobic001G512700 Sobic002G157000 Sobic002G157000 Sobic003G200200--Sobic002G157000 Sobic003G200200--Sobic002G006900 Sobic003G268300 Sobic003G268300 Sobic003G200200--Sobic003G268300 Sobic001G251700 Sobic001G251700 Sobic003G200200--Sobic001G251700 Sobic007G096600 Sobic007G096600 Sobic003G200200--Sobic007G096600 Sobic002G248400 Sobic002G248400 Sobic003G200200--Sobic002G248400 Sobic003G200200--Sobic001G155000 Sobic008G173900 Sobic008G173900 Sobic003G200200--Sobic008G173900 Sobic003G170100 Sobic003G170100 Sobic003G200200--Sobic003G170100 Sobic004G009600 Sobic004G009600 Sobic009G040600--Sobic004G009600 Sobic009G040600--Sobic002G006900 Sobic009G040600--Sobic008G047800 Sobic004G208900 Sobic004G208900 Sobic009G040600--Sobic004G208900 Sobic005G112300 Sobic005G112300 Sobic009G040600--Sobic005G112300 Sobic009G040600--Sobic007G065400 Sobic008G028700 Sobic008G028700 Sobic009G040600--Sobic008G028700 Sobic009G040600--Sobic002G309600 Sobic009G126400 Sobic009G126400 Sobic009G040600--Sobic009G126400 Sobic001G222500--Sobic004G084300 Sobic001G222500--Sobic008G047800 Sobic001G222500--Sobic001G155000 Sobic002G310200 Sobic002G310200 Sobic001G222500--Sobic002G310200 Sobic001G222500--Sobic009G126400 Sobic001G222500--Sobic009G040600 Sobic001G222500--Sobic002G006900 Sobic003G052200 Sobic003G052200 Sobic001G222500--Sobic003G052200 Sobic007G096000 Sobic007G096000 Sobic001G222500--Sobic007G096000 Sobic007G011300--Sobic008G047800 Sobic009G166300 Sobic009G166300 Sobic007G011300--Sobic009G166300 Sobic007G011300--Sobic001G155000 Sobic007G011300--Sobic002G006900 Sobic007G011300--Sobic005G112300 Sobic007G011300--Sobic007G217000 Sobic007G011300--Sobic009G040600 Sobic002G112700 Sobic002G112700 Sobic007G011300--Sobic002G112700 Sobic001G114000 Sobic001G114000 Sobic007G011300--Sobic001G114000 Sobic006G116100 Sobic006G116100 Sobic008G153000--Sobic006G116100 Sobic006G046700 Sobic006G046700 Sobic008G153000--Sobic006G046700 Sobic008G149800 Sobic008G149800 Sobic008G153000--Sobic008G149800 Sobic002G264200 Sobic002G264200 Sobic008G153000--Sobic002G264200 Sobic008G153000--Sobic001G155000 Sobic003G445400 Sobic003G445400 Sobic008G153000--Sobic003G445400 Sobic003G059750 Sobic003G059750 Sobic008G153000--Sobic003G059750 Sobic007G026000 Sobic007G026000 Sobic008G153000--Sobic007G026000 Sobic010G069100 Sobic010G069100 Sobic008G153000--Sobic010G069100 Sobic006G012500 Sobic006G012500 Sobic010G053800--Sobic006G012500 Sobic010G275500 Sobic010G275500 Sobic010G053800--Sobic010G275500 Sobic004G072100 Sobic004G072100 Sobic010G053800--Sobic004G072100 Sobic010G053800--Sobic001G155000 Sobic003G187500 Sobic003G187500 Sobic010G053800--Sobic003G187500 Sobic010G053800--Sobic008G047800 Sobic010G116600 Sobic010G116600 Sobic010G053800--Sobic010G116600 Sobic006G163800 Sobic006G163800 Sobic010G053800--Sobic006G163800 Sobic004G039600 Sobic004G039600 Sobic010G053800--Sobic004G039600 Sobic007G217000--Sobic001G114000 Sobic007G217000--Sobic008G047800 Sobic007G217000--Sobic009G166300 Sobic007G217000--Sobic001G155000 Sobic001G474600 Sobic001G474600 Sobic007G217000--Sobic001G474600 Sobic007G217000--Sobic007G011300 Sobic007G118600 Sobic007G118600 Sobic007G217000--Sobic007G118600 Sobic007G217000--Sobic002G310200 Sobic004G067700 Sobic004G067700 Sobic007G217000--Sobic004G067700
Octagon: transcription factors


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