Gene annotation
Transcriptome id Sobic.003G200200.1
Synonym Sb03g026240
Functional annotation SIT4 phosphatase-associated protein domain containing protein, expressed
UniProt C5XPF3
Pfam PF04499
Panther DB PTHR12634 PTHR12634:SF17
NCBI CDD KOG2073; SAP family cell cycle dependent phosphatase-associated protein
KEGG Orthology K15501; PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G30470 : SIT4 phosphatase-associated family protein
RAP-DB (Rice) LOC_Os05g51490.2 : SIT4 phosphatase-associated protein domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044748 , Zm00025a028519 , Zm00025a038412
Brachypodium KQJ84657 , KQJ84659 , KQJ84658 , KQK08471 , KQJ84671
Barley HORVU3Hr1G050920.14 , HORVU3Hr1G050920.13 , HORVU3Hr1G050920.12 , HORVU3Hr1G050920.11 , HORVU3Hr1G050920.10 , HORVU3Hr1G050920.9 , HORVU3Hr1G050920.8 , HORVU3Hr1G050920.7 , HORVU3Hr1G050920.6 , HORVU3Hr1G050920.5 , HORVU3Hr1G050920.4 , HORVU3Hr1G050920.3 , HORVU3Hr1G050920.2 , HORVU3Hr1G050920.1 , HORVU2Hr1G103580.5 , HORVU2Hr1G103580.3 , HORVU2Hr1G103580.2 , HORVU2Hr1G103580.1 , HORVU2Hr1G103580.8 , HORVU2Hr1G103580.12 , HORVU2Hr1G103580.11
Wheat TraesCS2B02G485800 , TraesCS2B02G485800 , TraesCS2D02G465000 , TraesCS3A02G210300 , TraesCS3A02G210300 , TraesCS3B02G240900 , TraesCS3D02G213100 , TraesCS3D02G213100 , TraesCS3B02G240900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
2 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
3 Sobic.003G268300 surp module family protein, putative, expressed -
4 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
5 Sobic.007G096600 - -
6 Sobic.002G248400 ENT domain containing protein, expressed -
7 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
8 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -
9 Sobic.003G170100 - -
10 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
11 Sobic.005G023900 expressed protein -
12 Sobic.007G137900 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
13 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
14 Sobic.003G176500 - -
15 Sobic.008G054500 WD domain, G-beta repeat domain containing protein, expressed -
16 Sobic.001G094000 expressed protein -
17 Sobic.002G243900 - -
18 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
19 Sobic.001G413500 expressed protein -
20 Sobic.002G320500 MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic003G200200 Sobic003G200200 Sobic002G157000 Sobic002G157000 Sobic003G200200--Sobic002G157000 Sobic002G006900 Sobic002G006900 Sobic003G200200--Sobic002G006900 Sobic003G268300 Sobic003G268300 Sobic003G200200--Sobic003G268300 Sobic001G251700 Sobic001G251700 Sobic003G200200--Sobic001G251700 Sobic007G096600 Sobic007G096600 Sobic003G200200--Sobic007G096600 Sobic002G248400 Sobic002G248400 Sobic003G200200--Sobic002G248400 Sobic001G155000 Sobic001G155000 Sobic003G200200--Sobic001G155000 Sobic008G173900 Sobic008G173900 Sobic003G200200--Sobic008G173900 Sobic003G170100 Sobic003G170100 Sobic003G200200--Sobic003G170100 Sobic002G157000--Sobic002G248400 Sobic002G320500 Sobic002G320500 Sobic002G157000--Sobic002G320500 Sobic002G157000--Sobic003G200200 Sobic001G420200 Sobic001G420200 Sobic002G157000--Sobic001G420200 Sobic002G157000--Sobic008G173900 Sobic002G157000--Sobic003G268300 Sobic001G162300 Sobic001G162300 Sobic002G157000--Sobic001G162300 Sobic003G108700 Sobic003G108700 Sobic002G157000--Sobic003G108700 Sobic001G094000 Sobic001G094000 Sobic002G157000--Sobic001G094000 Sobic008G047800 Sobic008G047800 Sobic002G006900--Sobic008G047800 Sobic007G065400 Sobic007G065400 Sobic002G006900--Sobic007G065400 Sobic002G006900--Sobic003G200200 Sobic003G372700 Sobic003G372700 Sobic002G006900--Sobic003G372700 Sobic009G040600 Sobic009G040600 Sobic002G006900--Sobic009G040600 Sobic002G006900--Sobic001G155000 Sobic002G309600 Sobic002G309600 Sobic002G006900--Sobic002G309600 Sobic001G214300 Sobic001G214300 Sobic002G006900--Sobic001G214300 Sobic001G512700 Sobic001G512700 Sobic002G006900--Sobic001G512700 Sobic003G268300--Sobic007G096600 Sobic003G268300--Sobic002G157000 Sobic003G268300--Sobic001G420200 Sobic003G268300--Sobic003G200200 Sobic003G268300--Sobic002G248400 Sobic009G127900 Sobic009G127900 Sobic003G268300--Sobic009G127900 Sobic007G178700 Sobic007G178700 Sobic003G268300--Sobic007G178700 Sobic007G037900 Sobic007G037900 Sobic003G268300--Sobic007G037900 Sobic003G268300--Sobic008G173900 Sobic007G137900 Sobic007G137900 Sobic001G251700--Sobic007G137900 Sobic001G251700--Sobic003G200200 Sobic002G157300 Sobic002G157300 Sobic001G251700--Sobic002G157300 Sobic001G251700--Sobic002G157000 Sobic006G082600 Sobic006G082600 Sobic001G251700--Sobic006G082600 Sobic001G251700--Sobic002G248400 Sobic001G251700--Sobic002G320500 Sobic001G251700--Sobic003G268300 Sobic003G220200 Sobic003G220200 Sobic001G251700--Sobic003G220200 Sobic002G243900 Sobic002G243900 Sobic007G096600--Sobic002G243900 Sobic007G096600--Sobic003G268300 Sobic003G176500 Sobic003G176500 Sobic007G096600--Sobic003G176500 Sobic001G274200 Sobic001G274200 Sobic007G096600--Sobic001G274200 Sobic007G096600--Sobic003G200200 Sobic005G144400 Sobic005G144400 Sobic007G096600--Sobic005G144400 Sobic003G148000 Sobic003G148000 Sobic007G096600--Sobic003G148000 Sobic003G332800 Sobic003G332800 Sobic007G096600--Sobic003G332800 Sobic007G096600--Sobic001G420200 Sobic002G248400--Sobic002G157000 Sobic002G248400--Sobic003G108700 Sobic002G248400--Sobic003G268300 Sobic002G248400--Sobic001G420200 Sobic002G248400--Sobic002G320500 Sobic002G248400--Sobic003G200200 Sobic006G032400 Sobic006G032400 Sobic002G248400--Sobic006G032400 Sobic001G090400 Sobic001G090400 Sobic002G248400--Sobic001G090400 Sobic004G257400 Sobic004G257400 Sobic002G248400--Sobic004G257400 Sobic001G155000--Sobic008G047800 Sobic001G155000--Sobic002G006900 Sobic001G155000--Sobic003G200200 Sobic001G155000--Sobic009G040600 Sobic001G222500 Sobic001G222500 Sobic001G155000--Sobic001G222500 Sobic007G011300 Sobic007G011300 Sobic001G155000--Sobic007G011300 Sobic008G153000 Sobic008G153000 Sobic001G155000--Sobic008G153000 Sobic010G053800 Sobic010G053800 Sobic001G155000--Sobic010G053800 Sobic007G217000 Sobic007G217000 Sobic001G155000--Sobic007G217000 Sobic008G173900--Sobic002G157000 Sobic002G144933 Sobic002G144933 Sobic008G173900--Sobic002G144933 Sobic008G173900--Sobic001G420200 Sobic008G173900--Sobic003G268300 Sobic008G054500 Sobic008G054500 Sobic008G173900--Sobic008G054500 Sobic008G173900--Sobic003G200200 Sobic008G173900--Sobic001G274200 Sobic001G413500 Sobic001G413500 Sobic008G173900--Sobic001G413500 Sobic008G173900--Sobic007G096600 Sobic005G110472 Sobic005G110472 Sobic003G170100--Sobic005G110472 Sobic003G170100--Sobic003G268300 Sobic003G170100--Sobic003G200200 Sobic003G170100--Sobic007G096600 Sobic003G170100--Sobic002G144933 Sobic003G170100--Sobic002G157000 Sobic001G152320 Sobic001G152320 Sobic003G170100--Sobic001G152320 Sobic003G170100--Sobic007G137900 Sobic003G170100--Sobic001G162300
Octagon: transcription factors


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