Gene annotation
Transcriptome id Sobic.008G173900.2,Sobic.008G173900.1
Synonym Sb08g021850, BSL3
Functional annotation "OsPPKL3(Ortholog in rice:Zhan et al., 2012)" (PubMedID : 31659913)
serine/threonine-protein phosphatase BSL2, putative, expressed
UniProt C5YSD4 , A0A1B6PE96
Pfam PF07646 PF13415 PF00149
Panther DB PTHR11668 PTHR11668:SF243
NCBI CDD KOG0374; Serine/threonine specific protein phosphatase PP1, catalytic subunit
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0016787hydrolase activity


Orthologs (automatic annotation)
TAIR AT1G08420 : BRI1 suppressor 1 (BSU1)-like 2
RAP-DB (Rice) LOC_Os12g42310.1 : serine/threonine-protein phosphatase BSL2, putative, expressed
MaizeGDB (Corn) Zm00025a052216 , Zm00025a007256 , Zm00025a025151 , Zm00025a017249 , Zm00025a004724
Brachypodium KQJ85747 , KQK13977
Barley HORVU5Hr1G092820.21 , HORVU5Hr1G092820.20 , HORVU5Hr1G092820.23 , HORVU5Hr1G092820.22 , HORVU5Hr1G092820.25 , HORVU5Hr1G092820.24 , HORVU5Hr1G092820.26 , HORVU5Hr1G007920.9 , HORVU5Hr1G007920.8 , HORVU5Hr1G007920.1 , HORVU5Hr1G007920.3 , HORVU5Hr1G007920.5 , HORVU5Hr1G007920.4 , HORVU5Hr1G007920.7 , HORVU5Hr1G007920.6 , HORVU5Hr1G007920.2 , HORVU5Hr1G007920.14 , HORVU5Hr1G007920.11 , HORVU5Hr1G007920.10 , HORVU5Hr1G007920.13 , HORVU5Hr1G007920.12 , HORVU5Hr1G092820.6 , HORVU5Hr1G092820.2 , HORVU5Hr1G092820.8 , HORVU5Hr1G092820.9 , HORVU5Hr1G092820.7 , HORVU5Hr1G092820.4 , HORVU5Hr1G092820.5 , HORVU5Hr1G092820.3 , HORVU5Hr1G092820.18 , HORVU5Hr1G092820.19 , HORVU5Hr1G092820.14 , HORVU5Hr1G092820.15 , HORVU5Hr1G092820.16 , HORVU5Hr1G092820.17 , HORVU5Hr1G092820.10 , HORVU5Hr1G092820.11 , HORVU5Hr1G092820.12 , HORVU5Hr1G092820.13
Wheat TraesCS5A02G373900 , TraesCS5A02G030300 , TraesCS5A02G030300 , TraesCS5B02G375800 , TraesCS5D02G383300 , TraesCS5B02G029100 , TraesCS5B02G029100 , TraesCS5D02G038500 , TraesCS5D02G038500 , TraesCS5D02G038500 , TraesCS5D02G038500
Populus PNT55888 , PNT55889


JBrowse

Open New Page


cDNA sequences
Sobic.008G173900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
2 Sobic.002G144933 - -
3 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
4 Sobic.003G268300 surp module family protein, putative, expressed -
5 Sobic.008G054500 WD domain, G-beta repeat domain containing protein, expressed -
6 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
7 Sobic.001G274200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
8 Sobic.001G413500 expressed protein -
9 Sobic.007G096600 - -
10 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
11 Sobic.002G320500 MYB family transcription factor, putative, expressed -
12 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
13 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
14 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
15 Sobic.007G000100 PWWP domain containing protein, expressed -
16 Sobic.002G248400 ENT domain containing protein, expressed -
17 Sobic.007G178700 - -
18 Sobic.003G170100 - -
19 Sobic.003G084900 expressed protein -
20 Sobic.009G127900 - -


Gene co-expression network
sample Sobic008G173900 Sobic008G173900 Sobic002G157000 Sobic002G157000 Sobic008G173900--Sobic002G157000 Sobic002G144933 Sobic002G144933 Sobic008G173900--Sobic002G144933 Sobic001G420200 Sobic001G420200 Sobic008G173900--Sobic001G420200 Sobic003G268300 Sobic003G268300 Sobic008G173900--Sobic003G268300 Sobic008G054500 Sobic008G054500 Sobic008G173900--Sobic008G054500 Sobic003G200200 Sobic003G200200 Sobic008G173900--Sobic003G200200 Sobic001G274200 Sobic001G274200 Sobic008G173900--Sobic001G274200 Sobic001G413500 Sobic001G413500 Sobic008G173900--Sobic001G413500 Sobic007G096600 Sobic007G096600 Sobic008G173900--Sobic007G096600 Sobic002G248400 Sobic002G248400 Sobic002G157000--Sobic002G248400 Sobic002G320500 Sobic002G320500 Sobic002G157000--Sobic002G320500 Sobic002G157000--Sobic003G200200 Sobic002G157000--Sobic001G420200 Sobic002G157000--Sobic008G173900 Sobic002G157000--Sobic003G268300 Sobic001G162300 Sobic001G162300 Sobic002G157000--Sobic001G162300 Sobic003G108700 Sobic003G108700 Sobic002G157000--Sobic003G108700 Sobic001G094000 Sobic001G094000 Sobic002G157000--Sobic001G094000 Sobic002G144933--Sobic008G173900 Sobic002G144933--Sobic002G157000 Sobic002G144933--Sobic001G420200 Sobic002G144933--Sobic003G268300 Sobic002G144933--Sobic001G274200 Sobic007G037900 Sobic007G037900 Sobic002G144933--Sobic007G037900 Sobic004G145500 Sobic004G145500 Sobic002G144933--Sobic004G145500 Sobic003G170100 Sobic003G170100 Sobic002G144933--Sobic003G170100 Sobic009G065100 Sobic009G065100 Sobic002G144933--Sobic009G065100 Sobic001G420200--Sobic001G274200 Sobic001G420200--Sobic002G157000 Sobic001G420200--Sobic003G268300 Sobic001G420200--Sobic008G173900 Sobic001G420200--Sobic002G248400 Sobic001G420200--Sobic007G096600 Sobic001G420200--Sobic007G037900 Sobic001G420200--Sobic002G144933 Sobic007G178700 Sobic007G178700 Sobic001G420200--Sobic007G178700 Sobic003G268300--Sobic007G096600 Sobic003G268300--Sobic002G157000 Sobic003G268300--Sobic001G420200 Sobic003G268300--Sobic003G200200 Sobic003G268300--Sobic002G248400 Sobic009G127900 Sobic009G127900 Sobic003G268300--Sobic009G127900 Sobic003G268300--Sobic007G178700 Sobic003G268300--Sobic007G037900 Sobic003G268300--Sobic008G173900 Sobic008G054500--Sobic008G173900 Sobic008G054500--Sobic003G200200 Sobic008G054500--Sobic003G268300 Sobic008G054500--Sobic002G248400 Sobic008G078100 Sobic008G078100 Sobic008G054500--Sobic008G078100 Sobic008G054500--Sobic002G157000 Sobic003G445400 Sobic003G445400 Sobic008G054500--Sobic003G445400 Sobic007G185900 Sobic007G185900 Sobic008G054500--Sobic007G185900 Sobic003G397800 Sobic003G397800 Sobic008G054500--Sobic003G397800 Sobic003G200200--Sobic002G157000 Sobic002G006900 Sobic002G006900 Sobic003G200200--Sobic002G006900 Sobic003G200200--Sobic003G268300 Sobic001G251700 Sobic001G251700 Sobic003G200200--Sobic001G251700 Sobic003G200200--Sobic007G096600 Sobic003G200200--Sobic002G248400 Sobic001G155000 Sobic001G155000 Sobic003G200200--Sobic001G155000 Sobic003G200200--Sobic008G173900 Sobic003G200200--Sobic003G170100 Sobic001G274200--Sobic001G420200 Sobic001G274200--Sobic007G096600 Sobic001G274200--Sobic003G268300 Sobic001G274200--Sobic008G173900 Sobic001G274200--Sobic002G144933 Sobic001G133466 Sobic001G133466 Sobic001G274200--Sobic001G133466 Sobic001G274200--Sobic007G037900 Sobic002G243900 Sobic002G243900 Sobic001G274200--Sobic002G243900 Sobic010G123901 Sobic010G123901 Sobic001G274200--Sobic010G123901 Sobic009G083900 Sobic009G083900 Sobic001G413500--Sobic009G083900 Sobic001G413500--Sobic008G173900 Sobic001G413500--Sobic002G157000 Sobic004G240800 Sobic004G240800 Sobic001G413500--Sobic004G240800 Sobic001G497300 Sobic001G497300 Sobic001G413500--Sobic001G497300 Sobic005G023900 Sobic005G023900 Sobic001G413500--Sobic005G023900 Sobic001G413500--Sobic003G200200 Sobic001G413500--Sobic004G145500 Sobic001G413500--Sobic003G268300 Sobic007G096600--Sobic002G243900 Sobic007G096600--Sobic003G268300 Sobic003G176500 Sobic003G176500 Sobic007G096600--Sobic003G176500 Sobic007G096600--Sobic001G274200 Sobic007G096600--Sobic003G200200 Sobic005G144400 Sobic005G144400 Sobic007G096600--Sobic005G144400 Sobic003G148000 Sobic003G148000 Sobic007G096600--Sobic003G148000 Sobic003G332800 Sobic003G332800 Sobic007G096600--Sobic003G332800 Sobic007G096600--Sobic001G420200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.