Gene annotation
Transcriptome id Sobic.008G054500.1
Synonym Sb08g004620
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6PBM1
Pfam PF00400
Panther DB PTHR14107 PTHR14107:SF18
NCBI CDD KOG2394; WD40 protein DMR-N9
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G53390 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os12g07450.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034003 , Zm00025a025730
Brachypodium KQJ92046 , KQJ89205
Barley HORVU5Hr1G036690.7 , HORVU5Hr1G036690.6 , HORVU5Hr1G036690.5 , HORVU5Hr1G036690.4 , HORVU5Hr1G036690.3 , HORVU5Hr1G036690.2 , HORVU5Hr1G036690.1
Wheat TraesCS5B02G118700 , TraesCS5B02G118700 , TraesCS5A02G111700 , TraesCS5A02G111700 , TraesCS5D02G127600
Populus -


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cDNA sequences
Sobic.008G054500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -
2 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
3 Sobic.003G268300 surp module family protein, putative, expressed -
4 Sobic.002G248400 ENT domain containing protein, expressed -
5 Sobic.008G078100 EDM2, putative, expressed -
6 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
7 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
8 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
9 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
10 Sobic.004G031700 expressed protein -
11 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
12 Sobic.009G178800 bZIP transcription factor, putative, expressed K14432: ABA responsive element binding factor
13 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
14 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
15 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
16 Sobic.003G084900 expressed protein -
17 Sobic.007G126600 RNA recognition motif containing protein, putative, expressed K12822: RBM25, RNA-binding protein 25
18 Sobic.007G167500 expressed protein -
19 Sobic.006G080300 SET domain containing protein, expressed -
20 Sobic.004G257400 WD-40 repeat family protein, putative, expressed -


Gene co-expression network
sample Sobic008G054500 Sobic008G054500 Sobic008G173900 Sobic008G173900 Sobic008G054500--Sobic008G173900 Sobic003G200200 Sobic003G200200 Sobic008G054500--Sobic003G200200 Sobic003G268300 Sobic003G268300 Sobic008G054500--Sobic003G268300 Sobic002G248400 Sobic002G248400 Sobic008G054500--Sobic002G248400 Sobic008G078100 Sobic008G078100 Sobic008G054500--Sobic008G078100 Sobic002G157000 Sobic002G157000 Sobic008G054500--Sobic002G157000 Sobic003G445400 Sobic003G445400 Sobic008G054500--Sobic003G445400 Sobic007G185900 Sobic007G185900 Sobic008G054500--Sobic007G185900 Sobic003G397800 Sobic003G397800 Sobic008G054500--Sobic003G397800 Sobic008G173900--Sobic002G157000 Sobic002G144933 Sobic002G144933 Sobic008G173900--Sobic002G144933 Sobic001G420200 Sobic001G420200 Sobic008G173900--Sobic001G420200 Sobic008G173900--Sobic003G268300 Sobic008G173900--Sobic008G054500 Sobic008G173900--Sobic003G200200 Sobic001G274200 Sobic001G274200 Sobic008G173900--Sobic001G274200 Sobic001G413500 Sobic001G413500 Sobic008G173900--Sobic001G413500 Sobic007G096600 Sobic007G096600 Sobic008G173900--Sobic007G096600 Sobic003G200200--Sobic002G157000 Sobic002G006900 Sobic002G006900 Sobic003G200200--Sobic002G006900 Sobic003G200200--Sobic003G268300 Sobic001G251700 Sobic001G251700 Sobic003G200200--Sobic001G251700 Sobic003G200200--Sobic007G096600 Sobic003G200200--Sobic002G248400 Sobic001G155000 Sobic001G155000 Sobic003G200200--Sobic001G155000 Sobic003G200200--Sobic008G173900 Sobic003G170100 Sobic003G170100 Sobic003G200200--Sobic003G170100 Sobic003G268300--Sobic007G096600 Sobic003G268300--Sobic002G157000 Sobic003G268300--Sobic001G420200 Sobic003G268300--Sobic003G200200 Sobic003G268300--Sobic002G248400 Sobic009G127900 Sobic009G127900 Sobic003G268300--Sobic009G127900 Sobic007G178700 Sobic007G178700 Sobic003G268300--Sobic007G178700 Sobic007G037900 Sobic007G037900 Sobic003G268300--Sobic007G037900 Sobic003G268300--Sobic008G173900 Sobic002G248400--Sobic002G157000 Sobic003G108700 Sobic003G108700 Sobic002G248400--Sobic003G108700 Sobic002G248400--Sobic003G268300 Sobic002G248400--Sobic001G420200 Sobic002G320500 Sobic002G320500 Sobic002G248400--Sobic002G320500 Sobic002G248400--Sobic003G200200 Sobic006G032400 Sobic006G032400 Sobic002G248400--Sobic006G032400 Sobic001G090400 Sobic001G090400 Sobic002G248400--Sobic001G090400 Sobic004G257400 Sobic004G257400 Sobic002G248400--Sobic004G257400 Sobic001G094000 Sobic001G094000 Sobic008G078100--Sobic001G094000 Sobic008G078100--Sobic008G054500 Sobic009G040700 Sobic009G040700 Sobic008G078100--Sobic009G040700 Sobic001G477800 Sobic001G477800 Sobic008G078100--Sobic001G477800 Sobic003G187400 Sobic003G187400 Sobic008G078100--Sobic003G187400 Sobic001G544200 Sobic001G544200 Sobic008G078100--Sobic001G544200 Sobic008G078100--Sobic007G185900 Sobic003G422300 Sobic003G422300 Sobic008G078100--Sobic003G422300 Sobic004G196700 Sobic004G196700 Sobic008G078100--Sobic004G196700 Sobic002G157000--Sobic002G248400 Sobic002G157000--Sobic002G320500 Sobic002G157000--Sobic003G200200 Sobic002G157000--Sobic001G420200 Sobic002G157000--Sobic008G173900 Sobic002G157000--Sobic003G268300 Sobic001G162300 Sobic001G162300 Sobic002G157000--Sobic001G162300 Sobic002G157000--Sobic003G108700 Sobic002G157000--Sobic001G094000 Sobic004G031700 Sobic004G031700 Sobic003G445400--Sobic004G031700 Sobic009G000500 Sobic009G000500 Sobic003G445400--Sobic009G000500 Sobic008G067600 Sobic008G067600 Sobic003G445400--Sobic008G067600 Sobic003G307000 Sobic003G307000 Sobic003G445400--Sobic003G307000 Sobic002G158700 Sobic002G158700 Sobic003G445400--Sobic002G158700 Sobic006G128900 Sobic006G128900 Sobic003G445400--Sobic006G128900 Sobic007G096000 Sobic007G096000 Sobic003G445400--Sobic007G096000 Sobic001G511500 Sobic001G511500 Sobic003G445400--Sobic001G511500 Sobic008G153000 Sobic008G153000 Sobic003G445400--Sobic008G153000 Sobic007G185900--Sobic004G196700 Sobic002G157300 Sobic002G157300 Sobic007G185900--Sobic002G157300 Sobic007G078000 Sobic007G078000 Sobic007G185900--Sobic007G078000 Sobic010G260500 Sobic010G260500 Sobic007G185900--Sobic010G260500 Sobic002G313300 Sobic002G313300 Sobic007G185900--Sobic002G313300 Sobic007G185900--Sobic008G054500 Sobic007G185900--Sobic003G397800 Sobic005G149500 Sobic005G149500 Sobic007G185900--Sobic005G149500 Sobic007G185900--Sobic003G187400 Sobic002G297200 Sobic002G297200 Sobic003G397800--Sobic002G297200 Sobic001G409600 Sobic001G409600 Sobic003G397800--Sobic001G409600 Sobic002G353600 Sobic002G353600 Sobic003G397800--Sobic002G353600 Sobic007G167500 Sobic007G167500 Sobic003G397800--Sobic007G167500 Sobic003G397800--Sobic003G445400 Sobic001G206100 Sobic001G206100 Sobic003G397800--Sobic001G206100 Sobic003G397800--Sobic007G185900 Sobic010G101800 Sobic010G101800 Sobic003G397800--Sobic010G101800 Sobic003G397800--Sobic008G054500
Octagon: transcription factors


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