Gene annotation
Transcriptome id Sobic.004G257400.1
Synonym Sb04g029600
Functional annotation WD-40 repeat family protein, putative, expressed
UniProt C5XZT4
Pfam PF00400
Panther DB PTHR22847 PTHR22847:SF489
NCBI CDD KOG4532; WD40-like repeat containing protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G56190 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os02g48964.1 : WD-40 repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a021843 , Zm00025a032561 , Zm00025a050559
Brachypodium KQK01554
Barley HORVU6Hr1G071690.5 , HORVU6Hr1G071690.4 , HORVU6Hr1G071690.6 , HORVU6Hr1G071690.2 , HORVU6Hr1G071690.9 , HORVU6Hr1G071690.8 , HORVU6Hr1G071690.11 , HORVU6Hr1G071690.10 , HORVU6Hr1G071690.13 , HORVU6Hr1G071690.12 , HORVU6Hr1G071690.15 , HORVU6Hr1G071690.14 , HORVU6Hr1G071690.17 , HORVU6Hr1G071690.16 , HORVU6Hr1G071690.7 , HORVU6Hr1G071690.3
Wheat TraesCS6B02G313300 , TraesCS6B02G313300 , TraesCS7B02G127900 , TraesCS6D02G264800 , TraesCS6D02G264800 , TraesCS6B02G313100 , TraesCS6B02G313100 , TraesCS6A02G284600 , TraesCS6A02G284400 , TraesCS6A02G284400 , TraesCS7D02G222700
Populus -


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cDNA sequences
Sobic.004G257400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G248400 ENT domain containing protein, expressed -
2 Sobic.003G108700 RNA recognition motif, putative, expressed -
3 Sobic.008G054500 WD domain, G-beta repeat domain containing protein, expressed -
4 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
5 Sobic.007G026300 pre-mRNA-splicing factor SLU7, putative, expressed K12819: pre-mRNA-processing factor SLU7
6 Sobic.003G073000 IWS1 C-terminus family protein, putative, expressed K17498: SPN1, transcription factor SPN1
7 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
8 Sobic.007G167500 expressed protein -
9 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
10 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
11 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
12 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
13 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
14 Sobic.001G206100 expressed protein -
15 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
16 Sobic.008G067600 protein kinase PKN/PRK1, effector, putative, expressed -
17 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
18 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
19 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
20 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit


Gene co-expression network
sample Sobic004G257400 Sobic004G257400 Sobic002G248400 Sobic002G248400 Sobic004G257400--Sobic002G248400 Sobic003G108700 Sobic003G108700 Sobic004G257400--Sobic003G108700 Sobic008G054500 Sobic008G054500 Sobic004G257400--Sobic008G054500 Sobic003G445400 Sobic003G445400 Sobic004G257400--Sobic003G445400 Sobic007G026300 Sobic007G026300 Sobic004G257400--Sobic007G026300 Sobic003G073000 Sobic003G073000 Sobic004G257400--Sobic003G073000 Sobic001G090400 Sobic001G090400 Sobic004G257400--Sobic001G090400 Sobic007G167500 Sobic007G167500 Sobic004G257400--Sobic007G167500 Sobic001G251700 Sobic001G251700 Sobic004G257400--Sobic001G251700 Sobic002G157000 Sobic002G157000 Sobic002G248400--Sobic002G157000 Sobic002G248400--Sobic003G108700 Sobic003G268300 Sobic003G268300 Sobic002G248400--Sobic003G268300 Sobic001G420200 Sobic001G420200 Sobic002G248400--Sobic001G420200 Sobic002G320500 Sobic002G320500 Sobic002G248400--Sobic002G320500 Sobic003G200200 Sobic003G200200 Sobic002G248400--Sobic003G200200 Sobic006G032400 Sobic006G032400 Sobic002G248400--Sobic006G032400 Sobic002G248400--Sobic001G090400 Sobic002G248400--Sobic004G257400 Sobic003G108700--Sobic002G248400 Sobic003G108700--Sobic002G157000 Sobic003G108700--Sobic003G268300 Sobic003G108700--Sobic004G257400 Sobic007G126600 Sobic007G126600 Sobic003G108700--Sobic007G126600 Sobic003G108700--Sobic001G420200 Sobic008G173900 Sobic008G173900 Sobic003G108700--Sobic008G173900 Sobic003G108700--Sobic003G200200 Sobic003G108700--Sobic007G167500 Sobic008G054500--Sobic008G173900 Sobic008G054500--Sobic003G200200 Sobic008G054500--Sobic003G268300 Sobic008G054500--Sobic002G248400 Sobic008G078100 Sobic008G078100 Sobic008G054500--Sobic008G078100 Sobic008G054500--Sobic002G157000 Sobic008G054500--Sobic003G445400 Sobic007G185900 Sobic007G185900 Sobic008G054500--Sobic007G185900 Sobic003G397800 Sobic003G397800 Sobic008G054500--Sobic003G397800 Sobic004G031700 Sobic004G031700 Sobic003G445400--Sobic004G031700 Sobic009G000500 Sobic009G000500 Sobic003G445400--Sobic009G000500 Sobic008G067600 Sobic008G067600 Sobic003G445400--Sobic008G067600 Sobic003G307000 Sobic003G307000 Sobic003G445400--Sobic003G307000 Sobic002G158700 Sobic002G158700 Sobic003G445400--Sobic002G158700 Sobic006G128900 Sobic006G128900 Sobic003G445400--Sobic006G128900 Sobic007G096000 Sobic007G096000 Sobic003G445400--Sobic007G096000 Sobic001G511500 Sobic001G511500 Sobic003G445400--Sobic001G511500 Sobic008G153000 Sobic008G153000 Sobic003G445400--Sobic008G153000 Sobic004G021100 Sobic004G021100 Sobic007G026300--Sobic004G021100 Sobic004G205600 Sobic004G205600 Sobic007G026300--Sobic004G205600 Sobic001G512700 Sobic001G512700 Sobic007G026300--Sobic001G512700 Sobic007G104800 Sobic007G104800 Sobic007G026300--Sobic007G104800 Sobic007G026300--Sobic004G257400 Sobic001G497300 Sobic001G497300 Sobic007G026300--Sobic001G497300 Sobic007G200600 Sobic007G200600 Sobic007G026300--Sobic007G200600 Sobic007G026300--Sobic001G090400 Sobic004G057400 Sobic004G057400 Sobic007G026300--Sobic004G057400 Sobic001G206100 Sobic001G206100 Sobic003G073000--Sobic001G206100 Sobic003G073000--Sobic004G257400 Sobic004G041500 Sobic004G041500 Sobic003G073000--Sobic004G041500 Sobic003G073000--Sobic007G185900 Sobic006G186400 Sobic006G186400 Sobic003G073000--Sobic006G186400 Sobic004G349900 Sobic004G349900 Sobic003G073000--Sobic004G349900 Sobic001G408700 Sobic001G408700 Sobic003G073000--Sobic001G408700 Sobic001G517500 Sobic001G517500 Sobic003G073000--Sobic001G517500 Sobic003G073000--Sobic001G251700 Sobic001G090400--Sobic008G067600 Sobic006G173100 Sobic006G173100 Sobic001G090400--Sobic006G173100 Sobic001G090400--Sobic004G057400 Sobic001G176200 Sobic001G176200 Sobic001G090400--Sobic001G176200 Sobic001G090400--Sobic002G320500 Sobic001G090400--Sobic009G000500 Sobic002G157300 Sobic002G157300 Sobic001G090400--Sobic002G157300 Sobic001G090400--Sobic004G205600 Sobic001G090400--Sobic002G248400 Sobic003G119000 Sobic003G119000 Sobic007G167500--Sobic003G119000 Sobic002G006900 Sobic002G006900 Sobic007G167500--Sobic002G006900 Sobic007G167500--Sobic003G397800 Sobic007G096600 Sobic007G096600 Sobic007G167500--Sobic007G096600 Sobic010G101800 Sobic010G101800 Sobic007G167500--Sobic010G101800 Sobic007G065400 Sobic007G065400 Sobic007G167500--Sobic007G065400 Sobic009G210500 Sobic009G210500 Sobic007G167500--Sobic009G210500 Sobic003G332800 Sobic003G332800 Sobic007G167500--Sobic003G332800 Sobic003G372700 Sobic003G372700 Sobic007G167500--Sobic003G372700 Sobic007G137900 Sobic007G137900 Sobic001G251700--Sobic007G137900 Sobic001G251700--Sobic003G200200 Sobic001G251700--Sobic002G157300 Sobic001G251700--Sobic002G157000 Sobic006G082600 Sobic006G082600 Sobic001G251700--Sobic006G082600 Sobic001G251700--Sobic002G248400 Sobic001G251700--Sobic002G320500 Sobic001G251700--Sobic003G268300 Sobic003G220200 Sobic003G220200 Sobic001G251700--Sobic003G220200
Octagon: transcription factors


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