Gene annotation
| Transcriptome id | Sobic.002G157300.2,Sobic.002G157300.1 |
|---|---|
| Synonym | PPX2, PPX-2, Sb02g019610 |
| Functional annotation | Ser/Thr protein phosphatase family protein, putative, expressed |
| UniProt | C5X8B4 |
| Pfam | PF00149 |
| Panther DB | PTHR11668 PTHR11668:SF278 |
| NCBI CDD | - |
| KEGG Orthology | K15423; serine/threonine-protein phosphatase 4 catalytic subunit |
| Gene Ontology | GO:0016787; hydrolase activity |
Orthologs (automatic annotation)
| TAIR | AT5G55260 : protein phosphatase X 2 |
|---|---|
| RAP-DB (Rice) | LOC_Os09g11230.1 : Ser/Thr protein phosphatase family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a013244 |
| Brachypodium | KQJ89701 |
| Barley | HORVU5Hr1G053560.1 , HORVU5Hr1G053560.2 , HORVU5Hr1G053560.3 , HORVU5Hr1G053560.4 , HORVU5Hr1G053560.5 , HORVU5Hr1G074200.8 , HORVU5Hr1G074200.9 , HORVU5Hr1G074200.6 , HORVU5Hr1G074200.7 , HORVU5Hr1G074200.4 , HORVU5Hr1G074200.5 , HORVU5Hr1G074200.2 , HORVU5Hr1G074200.1 |
| Wheat | TraesCS5A02G176800 , TraesCS4B02G310100 , TraesCS5B02G173100 , TraesCS5D02G180100 , TraesCS5B02G173100 |
| Populus | - |
JBrowse
| Sobic.002G157300 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G026400 | BUD13, putative, expressed | K13106: BUD13, pre-mRNA-splicing factor CWC26 |
| 2 | Sobic.003G187400 | - | K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2 |
| 3 | Sobic.007G011400 | armadillo/beta-catenin repeat family protein, putative, expressed | - |
| 4 | Sobic.005G149500 | palmitoyltransferase TIP1, putative, expressed | K18932: palmitoyltransferase |
| 5 | Sobic.001G094000 | expressed protein | - |
| 6 | Sobic.010G260500 | pre-mRNA-splicing factor syf2, putative, expressed | K12868: pre-mRNA-splicing factor SYF2 |
| 7 | Sobic.007G185900 | IBR domain containing protein, putative, expressed | K11968: ariadne-1 |
| 8 | Sobic.010G263800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed | - |
| 9 | Sobic.006G173100 | pre-mRNA-processing factor 31, putative, expressed | K12844: U4/U6 small nuclear ribonucleoprotein PRP31 |
| 10 | Sobic.007G137900 | nucleoside-triphosphatase, putative, expressed | K01510: ENTPD1_3_8, apyrase |
| 11 | Sobic.009G040700 | "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed | K01090: protein phosphatase |
| 12 | Sobic.001G514000 | OsFBL10 - F-box domain and LRR containing protein, expressed | - |
| 13 | Sobic.001G090400 | PHD-finger domain containing protein, putative, expressed | K11346: inhibitor of growth protein 4 |
| 14 | Sobic.003G012500 | expressed protein | - |
| 15 | Sobic.001G251700 | OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed | K04382: serine/threonine-protein phosphatase 2A catalytic subunit |
| 16 | Sobic.004G196700 | expressed protein | - |
| 17 | Sobic.008G067600 | protein kinase PKN/PRK1, effector, putative, expressed | - |
| 18 | Sobic.004G031700 | expressed protein | - |
| 19 | Sobic.003G401000 | adaptin, putative, expressed | K12400: AP-4 complex subunit epsilon-1 |
| 20 | Sobic.004G057400 | copper-transporting ATPase, putative, expressed | K17686: copA, ctpA, P-type Cu+ transporter |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
