Gene annotation
Transcriptome id Sobic.004G057400.1
Synonym RAN1, HMA7, Sb04g004820
Functional annotation copper-transporting ATPase, putative, expressed
UniProt C5XW52
Pfam PF12710 PF00403 PF00122
Panther DB PTHR24093 PTHR24093:SF360
NCBI CDD -
KEGG Orthology K17686; copA, ctpA, P-type Cu+ transporter
Gene Ontology GO:0000166; nucleotide binding


Orthologs (automatic annotation)
TAIR AT5G44790 : copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1)
RAP-DB (Rice) LOC_Os02g07630.1 : copper-transporting ATPase, putative, expressed
MaizeGDB (Corn) Zm00025a051747 , Zm00025a029429 , Zm00025a034785
Brachypodium KQJ93558 , KQK17019
Barley HORVU6Hr1G031960.7 , HORVU6Hr1G031960.6 , HORVU6Hr1G031960.5 , HORVU6Hr1G031960.4 , HORVU6Hr1G031960.3 , HORVU6Hr1G031960.2 , HORVU6Hr1G031960.1 , HORVU6Hr1G031960.8 , HORVU7Hr1G108890.5 , HORVU7Hr1G108890.4 , HORVU7Hr1G108890.7 , HORVU7Hr1G108890.6 , HORVU7Hr1G108890.1 , HORVU7Hr1G108890.3 , HORVU7Hr1G108890.2 , HORVU7Hr1G108890.9 , HORVU7Hr1G108890.8
Wheat TraesCS6D02G146500 , TraesCS6A02G156900 , TraesCS7B02G382300 , TraesCS7D02G467100 , TraesCS6B02G184800 , TraesCS7A02G480100 , TraesCS7A02G480100 , TraesCS7A02G480100
Populus -


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cDNA sequences
Sobic.004G057400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
2 Sobic.004G205600 bromodomain domain containing protein, expressed -
3 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
4 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
5 Sobic.008G067600 protein kinase PKN/PRK1, effector, putative, expressed -
6 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
7 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
8 Sobic.004G031700 expressed protein -
9 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
10 Sobic.001G176200 FHA domain containing protein, putative, expressed K13216: PPP1R8, nuclear inhibitor of protein phosphatase 1
11 Sobic.001G497300 protein kinase domain containing protein, expressed -
12 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
13 Sobic.007G026300 pre-mRNA-splicing factor SLU7, putative, expressed K12819: pre-mRNA-processing factor SLU7
14 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
15 Sobic.004G349900 -(PubMedID : 27329702)@expressed protein -
16 Sobic.003G401000 adaptin, putative, expressed K12400: AP-4 complex subunit epsilon-1
17 Sobic.003G084700 - -
18 Sobic.004G271900 RMD5 homolog A, putative, expressed -
19 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
20 Sobic.002G090800 expressed protein -


Gene co-expression network
sample Sobic004G057400 Sobic004G057400 Sobic001G090400 Sobic001G090400 Sobic004G057400--Sobic001G090400 Sobic004G205600 Sobic004G205600 Sobic004G057400--Sobic004G205600 Sobic002G157300 Sobic002G157300 Sobic004G057400--Sobic002G157300 Sobic009G000500 Sobic009G000500 Sobic004G057400--Sobic009G000500 Sobic008G067600 Sobic008G067600 Sobic004G057400--Sobic008G067600 Sobic006G128900 Sobic006G128900 Sobic004G057400--Sobic006G128900 Sobic007G011400 Sobic007G011400 Sobic004G057400--Sobic007G011400 Sobic004G031700 Sobic004G031700 Sobic004G057400--Sobic004G031700 Sobic007G205800 Sobic007G205800 Sobic004G057400--Sobic007G205800 Sobic001G090400--Sobic008G067600 Sobic006G173100 Sobic006G173100 Sobic001G090400--Sobic006G173100 Sobic001G090400--Sobic004G057400 Sobic001G176200 Sobic001G176200 Sobic001G090400--Sobic001G176200 Sobic002G320500 Sobic002G320500 Sobic001G090400--Sobic002G320500 Sobic001G090400--Sobic009G000500 Sobic001G090400--Sobic002G157300 Sobic001G090400--Sobic004G205600 Sobic002G248400 Sobic002G248400 Sobic001G090400--Sobic002G248400 Sobic004G205600--Sobic004G057400 Sobic001G497300 Sobic001G497300 Sobic004G205600--Sobic001G497300 Sobic004G205600--Sobic001G090400 Sobic003G081000 Sobic003G081000 Sobic004G205600--Sobic003G081000 Sobic007G026300 Sobic007G026300 Sobic004G205600--Sobic007G026300 Sobic004G205600--Sobic009G000500 Sobic004G205600--Sobic002G157300 Sobic009G065100 Sobic009G065100 Sobic004G205600--Sobic009G065100 Sobic002G157000 Sobic002G157000 Sobic004G205600--Sobic002G157000 Sobic010G026400 Sobic010G026400 Sobic002G157300--Sobic010G026400 Sobic003G187400 Sobic003G187400 Sobic002G157300--Sobic003G187400 Sobic002G157300--Sobic007G011400 Sobic005G149500 Sobic005G149500 Sobic002G157300--Sobic005G149500 Sobic001G094000 Sobic001G094000 Sobic002G157300--Sobic001G094000 Sobic010G260500 Sobic010G260500 Sobic002G157300--Sobic010G260500 Sobic007G185900 Sobic007G185900 Sobic002G157300--Sobic007G185900 Sobic010G263800 Sobic010G263800 Sobic002G157300--Sobic010G263800 Sobic002G157300--Sobic006G173100 Sobic009G000500--Sobic004G031700 Sobic003G445400 Sobic003G445400 Sobic009G000500--Sobic003G445400 Sobic009G000500--Sobic002G320500 Sobic009G000500--Sobic006G128900 Sobic006G133800 Sobic006G133800 Sobic009G000500--Sobic006G133800 Sobic009G000500--Sobic001G090400 Sobic003G307000 Sobic003G307000 Sobic009G000500--Sobic003G307000 Sobic008G173900 Sobic008G173900 Sobic009G000500--Sobic008G173900 Sobic001G206100 Sobic001G206100 Sobic009G000500--Sobic001G206100 Sobic008G067600--Sobic001G090400 Sobic008G067600--Sobic003G445400 Sobic004G084300 Sobic004G084300 Sobic008G067600--Sobic004G084300 Sobic008G067600--Sobic002G157300 Sobic001G315100 Sobic001G315100 Sobic008G067600--Sobic001G315100 Sobic001G512700 Sobic001G512700 Sobic008G067600--Sobic001G512700 Sobic008G067600--Sobic009G000500 Sobic008G067600--Sobic004G057400 Sobic008G047800 Sobic008G047800 Sobic008G067600--Sobic008G047800 Sobic006G209850 Sobic006G209850 Sobic006G128900--Sobic006G209850 Sobic001G511500 Sobic001G511500 Sobic006G128900--Sobic001G511500 Sobic006G128900--Sobic004G031700 Sobic006G128900--Sobic009G000500 Sobic006G128900--Sobic001G090400 Sobic006G128900--Sobic003G445400 Sobic003G268300 Sobic003G268300 Sobic006G128900--Sobic003G268300 Sobic001G477800 Sobic001G477800 Sobic006G128900--Sobic001G477800 Sobic006G128900--Sobic002G157000 Sobic007G011400--Sobic001G094000 Sobic007G011400--Sobic007G205800 Sobic007G011400--Sobic002G157300 Sobic007G011400--Sobic010G263800 Sobic002G313300 Sobic002G313300 Sobic007G011400--Sobic002G313300 Sobic009G040700 Sobic009G040700 Sobic007G011400--Sobic009G040700 Sobic007G011400--Sobic002G157000 Sobic001G162300 Sobic001G162300 Sobic007G011400--Sobic001G162300 Sobic008G034600 Sobic008G034600 Sobic007G011400--Sobic008G034600 Sobic004G031700--Sobic009G000500 Sobic004G031700--Sobic003G445400 Sobic001G544200 Sobic001G544200 Sobic004G031700--Sobic001G544200 Sobic004G031700--Sobic001G477800 Sobic006G080300 Sobic006G080300 Sobic004G031700--Sobic006G080300 Sobic004G031700--Sobic006G128900 Sobic004G031700--Sobic001G094000 Sobic004G031700--Sobic001G511500 Sobic002G158700 Sobic002G158700 Sobic004G031700--Sobic002G158700 Sobic007G205800--Sobic007G011400 Sobic009G087800 Sobic009G087800 Sobic007G205800--Sobic009G087800 Sobic007G205800--Sobic010G263800 Sobic007G205800--Sobic008G034600 Sobic004G271900 Sobic004G271900 Sobic007G205800--Sobic004G271900 Sobic009G022200 Sobic009G022200 Sobic007G205800--Sobic009G022200 Sobic003G093600 Sobic003G093600 Sobic007G205800--Sobic003G093600 Sobic003G258400 Sobic003G258400 Sobic007G205800--Sobic003G258400 Sobic002G077200 Sobic002G077200 Sobic007G205800--Sobic002G077200
Octagon: transcription factors


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