Gene annotation
Transcriptome id Sobic.007G011400.2
Synonym Sb07g001110
Functional annotation armadillo/beta-catenin repeat family protein, putative, expressed
UniProt C5YLX0
Pfam PF04564 PF00514
Panther DB PTHR23315 PTHR23315:SF117
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G23140 : RING/U-box superfamily protein with ARM repeat domain
RAP-DB (Rice) LOC_Os08g01900.1 : armadillo/beta-catenin repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a040191 , Zm00025a030292
Brachypodium KQK15023 , PNT66809
Barley HORVU3Hr1G081380.5 , HORVU3Hr1G081380.4 , HORVU3Hr1G081380.7 , HORVU3Hr1G081380.6 , HORVU3Hr1G081380.1 , HORVU3Hr1G081380.3 , HORVU3Hr1G081380.2 , HORVU3Hr1G081380.9 , HORVU3Hr1G081380.8 , HORVU3Hr1G113910.1 , HORVU3Hr1G113910.2 , HORVU3Hr1G113910.3 , HORVU3Hr1G081380.11 , HORVU3Hr1G081380.10
Wheat TraesCS3D02G382500 , TraesCS3B02G443500 , TraesCS3A02G521300 , TraesCS3A02G410000 , TraesCS3D02G527900 , TraesCS3D02G527900 , TraesCS3A02G410100 , TraesCS3A02G390200 , TraesCS3B02G591000 , TraesCS3B02G443200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G094000 expressed protein -
2 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
3 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
4 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
5 Sobic.002G313300 bromodomain domain containing protein, expressed -
6 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
7 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
8 Sobic.001G162300 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
9 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
10 Sobic.009G022200 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
11 Sobic.001G477800 expressed protein -
12 Sobic.005G149500 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
13 Sobic.006G009400 G-patch domain containing protein, expressed -
14 Sobic.010G026400 BUD13, putative, expressed K13106: BUD13, pre-mRNA-splicing factor CWC26
15 Sobic.009G087800 seven in absentia protein family domain containing protein, expressed K08742: E3 ubiquitin-protein ligase SIAH2
16 Sobic.002G320500 MYB family transcription factor, putative, expressed -
17 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
18 Sobic.004G196700 expressed protein -
19 Sobic.004G271900 RMD5 homolog A, putative, expressed -
20 Sobic.007G137900 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase


Gene co-expression network
sample Sobic007G011400 Sobic007G011400 Sobic001G094000 Sobic001G094000 Sobic007G011400--Sobic001G094000 Sobic007G205800 Sobic007G205800 Sobic007G011400--Sobic007G205800 Sobic002G157300 Sobic002G157300 Sobic007G011400--Sobic002G157300 Sobic010G263800 Sobic010G263800 Sobic007G011400--Sobic010G263800 Sobic002G313300 Sobic002G313300 Sobic007G011400--Sobic002G313300 Sobic009G040700 Sobic009G040700 Sobic007G011400--Sobic009G040700 Sobic002G157000 Sobic002G157000 Sobic007G011400--Sobic002G157000 Sobic001G162300 Sobic001G162300 Sobic007G011400--Sobic001G162300 Sobic008G034600 Sobic008G034600 Sobic007G011400--Sobic008G034600 Sobic001G094000--Sobic007G011400 Sobic001G094000--Sobic009G040700 Sobic001G477800 Sobic001G477800 Sobic001G094000--Sobic001G477800 Sobic001G094000--Sobic002G157000 Sobic003G268300 Sobic003G268300 Sobic001G094000--Sobic003G268300 Sobic001G094000--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic001G094000--Sobic003G187400 Sobic004G031700 Sobic004G031700 Sobic001G094000--Sobic004G031700 Sobic006G080300 Sobic006G080300 Sobic001G094000--Sobic006G080300 Sobic007G205800--Sobic007G011400 Sobic009G087800 Sobic009G087800 Sobic007G205800--Sobic009G087800 Sobic007G205800--Sobic010G263800 Sobic007G205800--Sobic008G034600 Sobic004G271900 Sobic004G271900 Sobic007G205800--Sobic004G271900 Sobic009G022200 Sobic009G022200 Sobic007G205800--Sobic009G022200 Sobic003G093600 Sobic003G093600 Sobic007G205800--Sobic003G093600 Sobic003G258400 Sobic003G258400 Sobic007G205800--Sobic003G258400 Sobic002G077200 Sobic002G077200 Sobic007G205800--Sobic002G077200 Sobic010G026400 Sobic010G026400 Sobic002G157300--Sobic010G026400 Sobic002G157300--Sobic003G187400 Sobic002G157300--Sobic007G011400 Sobic005G149500 Sobic005G149500 Sobic002G157300--Sobic005G149500 Sobic002G157300--Sobic001G094000 Sobic010G260500 Sobic010G260500 Sobic002G157300--Sobic010G260500 Sobic007G185900 Sobic007G185900 Sobic002G157300--Sobic007G185900 Sobic002G157300--Sobic010G263800 Sobic006G173100 Sobic006G173100 Sobic002G157300--Sobic006G173100 Sobic006G009400 Sobic006G009400 Sobic010G263800--Sobic006G009400 Sobic010G263800--Sobic007G011400 Sobic010G263800--Sobic002G077200 Sobic010G263800--Sobic002G313300 Sobic010G263800--Sobic002G157300 Sobic010G263800--Sobic007G205800 Sobic009G117400 Sobic009G117400 Sobic010G263800--Sobic009G117400 Sobic001G347600 Sobic001G347600 Sobic010G263800--Sobic001G347600 Sobic010G263800--Sobic008G034600 Sobic002G313300--Sobic001G477800 Sobic002G313300--Sobic002G077200 Sobic002G313300--Sobic007G011400 Sobic002G313300--Sobic010G263800 Sobic001G543900 Sobic001G543900 Sobic002G313300--Sobic001G543900 Sobic002G313300--Sobic006G080300 Sobic002G313300--Sobic006G009400 Sobic002G313300--Sobic007G185900 Sobic002G313300--Sobic004G031700 Sobic009G040700--Sobic001G094000 Sobic009G040700--Sobic003G187400 Sobic009G040700--Sobic005G149500 Sobic009G040700--Sobic007G011400 Sobic009G040700--Sobic002G157300 Sobic009G040700--Sobic001G477800 Sobic006G145000 Sobic006G145000 Sobic009G040700--Sobic006G145000 Sobic004G196700 Sobic004G196700 Sobic009G040700--Sobic004G196700 Sobic008G078100 Sobic008G078100 Sobic009G040700--Sobic008G078100 Sobic002G248400 Sobic002G248400 Sobic002G157000--Sobic002G248400 Sobic002G320500 Sobic002G320500 Sobic002G157000--Sobic002G320500 Sobic003G200200 Sobic003G200200 Sobic002G157000--Sobic003G200200 Sobic001G420200 Sobic001G420200 Sobic002G157000--Sobic001G420200 Sobic008G173900 Sobic008G173900 Sobic002G157000--Sobic008G173900 Sobic002G157000--Sobic003G268300 Sobic002G157000--Sobic001G162300 Sobic003G108700 Sobic003G108700 Sobic002G157000--Sobic003G108700 Sobic002G157000--Sobic001G094000 Sobic001G162300--Sobic002G157000 Sobic006G246900 Sobic006G246900 Sobic001G162300--Sobic006G246900 Sobic001G162300--Sobic003G268300 Sobic007G178700 Sobic007G178700 Sobic001G162300--Sobic007G178700 Sobic006G082600 Sobic006G082600 Sobic001G162300--Sobic006G082600 Sobic001G162300--Sobic007G011400 Sobic001G162300--Sobic001G094000 Sobic003G170100 Sobic003G170100 Sobic001G162300--Sobic003G170100 Sobic001G162300--Sobic001G477800 Sobic008G034600--Sobic007G205800 Sobic008G034600--Sobic007G011400 Sobic008G034600--Sobic010G263800 Sobic008G034600--Sobic004G271900 Sobic008G117200 Sobic008G117200 Sobic008G034600--Sobic008G117200 Sobic002G421700 Sobic002G421700 Sobic008G034600--Sobic002G421700 Sobic008G034600--Sobic009G022200 Sobic007G224900 Sobic007G224900 Sobic008G034600--Sobic007G224900 Sobic003G346000 Sobic003G346000 Sobic008G034600--Sobic003G346000
Octagon: transcription factors


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