Gene annotation
Transcriptome id Sobic.001G162300.3
Synonym Sb01g014200, FLK
Functional annotation KH domain containing protein, putative, expressed
UniProt A0A1Z5S6E7
Pfam PF00013
Panther DB PTHR10288:SF155 PTHR10288
NCBI CDD KOG2190; PolyC-binding proteins alphaCP-1 and related KH domain proteins
KEGG Orthology K13162; poly(rC)-binding protein 2
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT3G04610 : RNA-binding KH domain-containing protein
RAP-DB (Rice) LOC_Os03g42900.1 : KH domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a004574 , Zm00025a017290
Brachypodium KQJ85976 , PNT62404 , KQK14102
Barley HORVU4Hr1G011610.9 , HORVU4Hr1G011610.8 , HORVU4Hr1G011610.5 , HORVU4Hr1G011610.4 , HORVU4Hr1G011610.7 , HORVU4Hr1G011610.6 , HORVU4Hr1G011610.1 , HORVU4Hr1G011610.3 , HORVU4Hr1G011610.2 , HORVU4Hr1G011610.11 , HORVU4Hr1G011610.10 , HORVU4Hr1G011610.13 , HORVU4Hr1G011610.12
Wheat TraesCS4B02G069700 , TraesCS4D02G068400 , TraesCS4A02G245800 , TraesCS4A02G245800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
2 Sobic.006G246900 expressed protein -
3 Sobic.003G268300 surp module family protein, putative, expressed -
4 Sobic.007G178700 - -
5 Sobic.006G082600 OsFBX133 - F-box domain containing protein, expressed K10295: F-box protein 9
6 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
7 Sobic.001G094000 expressed protein -
8 Sobic.003G170100 - -
9 Sobic.001G477800 expressed protein -
10 Sobic.002G248400 ENT domain containing protein, expressed -
11 Sobic.007G037900 oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed -
12 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
13 Sobic.002G320500 MYB family transcription factor, putative, expressed -
14 Sobic.004G196700 expressed protein -
15 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
16 Sobic.007G137900 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
17 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -
18 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
19 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
20 Sobic.009G134500 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11


Gene co-expression network
sample Sobic001G162300 Sobic001G162300 Sobic002G157000 Sobic002G157000 Sobic001G162300--Sobic002G157000 Sobic006G246900 Sobic006G246900 Sobic001G162300--Sobic006G246900 Sobic003G268300 Sobic003G268300 Sobic001G162300--Sobic003G268300 Sobic007G178700 Sobic007G178700 Sobic001G162300--Sobic007G178700 Sobic006G082600 Sobic006G082600 Sobic001G162300--Sobic006G082600 Sobic007G011400 Sobic007G011400 Sobic001G162300--Sobic007G011400 Sobic001G094000 Sobic001G094000 Sobic001G162300--Sobic001G094000 Sobic003G170100 Sobic003G170100 Sobic001G162300--Sobic003G170100 Sobic001G477800 Sobic001G477800 Sobic001G162300--Sobic001G477800 Sobic002G248400 Sobic002G248400 Sobic002G157000--Sobic002G248400 Sobic002G320500 Sobic002G320500 Sobic002G157000--Sobic002G320500 Sobic003G200200 Sobic003G200200 Sobic002G157000--Sobic003G200200 Sobic001G420200 Sobic001G420200 Sobic002G157000--Sobic001G420200 Sobic008G173900 Sobic008G173900 Sobic002G157000--Sobic008G173900 Sobic002G157000--Sobic003G268300 Sobic002G157000--Sobic001G162300 Sobic003G108700 Sobic003G108700 Sobic002G157000--Sobic003G108700 Sobic002G157000--Sobic001G094000 Sobic006G246900--Sobic001G162300 Sobic006G246900--Sobic003G268300 Sobic007G037900 Sobic007G037900 Sobic006G246900--Sobic007G037900 Sobic006G246900--Sobic001G094000 Sobic006G246900--Sobic002G157000 Sobic009G134500 Sobic009G134500 Sobic006G246900--Sobic009G134500 Sobic008G063000 Sobic008G063000 Sobic006G246900--Sobic008G063000 Sobic006G246900--Sobic001G477800 Sobic006G246900--Sobic007G011400 Sobic007G096600 Sobic007G096600 Sobic003G268300--Sobic007G096600 Sobic003G268300--Sobic002G157000 Sobic003G268300--Sobic001G420200 Sobic003G268300--Sobic003G200200 Sobic003G268300--Sobic002G248400 Sobic009G127900 Sobic009G127900 Sobic003G268300--Sobic009G127900 Sobic003G268300--Sobic007G178700 Sobic003G268300--Sobic007G037900 Sobic003G268300--Sobic008G173900 Sobic007G178700--Sobic009G127900 Sobic007G178700--Sobic003G268300 Sobic002G243900 Sobic002G243900 Sobic007G178700--Sobic002G243900 Sobic003G087400 Sobic003G087400 Sobic007G178700--Sobic003G087400 Sobic004G007100 Sobic004G007100 Sobic007G178700--Sobic004G007100 Sobic007G178700--Sobic001G162300 Sobic001G446900 Sobic001G446900 Sobic007G178700--Sobic001G446900 Sobic005G144400 Sobic005G144400 Sobic007G178700--Sobic005G144400 Sobic007G178700--Sobic001G420200 Sobic006G082600--Sobic001G162300 Sobic006G082600--Sobic007G178700 Sobic007G037100 Sobic007G037100 Sobic006G082600--Sobic007G037100 Sobic001G251700 Sobic001G251700 Sobic006G082600--Sobic001G251700 Sobic004G196700 Sobic004G196700 Sobic006G082600--Sobic004G196700 Sobic006G082600--Sobic009G134500 Sobic010G124001 Sobic010G124001 Sobic006G082600--Sobic010G124001 Sobic006G082600--Sobic009G127900 Sobic006G082600--Sobic002G157000 Sobic007G011400--Sobic001G094000 Sobic007G205800 Sobic007G205800 Sobic007G011400--Sobic007G205800 Sobic002G157300 Sobic002G157300 Sobic007G011400--Sobic002G157300 Sobic010G263800 Sobic010G263800 Sobic007G011400--Sobic010G263800 Sobic002G313300 Sobic002G313300 Sobic007G011400--Sobic002G313300 Sobic009G040700 Sobic009G040700 Sobic007G011400--Sobic009G040700 Sobic007G011400--Sobic002G157000 Sobic007G011400--Sobic001G162300 Sobic008G034600 Sobic008G034600 Sobic007G011400--Sobic008G034600 Sobic001G094000--Sobic007G011400 Sobic001G094000--Sobic009G040700 Sobic001G094000--Sobic001G477800 Sobic001G094000--Sobic002G157000 Sobic001G094000--Sobic003G268300 Sobic001G094000--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic001G094000--Sobic003G187400 Sobic004G031700 Sobic004G031700 Sobic001G094000--Sobic004G031700 Sobic006G080300 Sobic006G080300 Sobic001G094000--Sobic006G080300 Sobic005G110472 Sobic005G110472 Sobic003G170100--Sobic005G110472 Sobic003G170100--Sobic003G268300 Sobic003G170100--Sobic003G200200 Sobic003G170100--Sobic007G096600 Sobic002G144933 Sobic002G144933 Sobic003G170100--Sobic002G144933 Sobic003G170100--Sobic002G157000 Sobic001G152320 Sobic001G152320 Sobic003G170100--Sobic001G152320 Sobic007G137900 Sobic007G137900 Sobic003G170100--Sobic007G137900 Sobic003G170100--Sobic001G162300 Sobic001G477800--Sobic002G313300 Sobic001G477800--Sobic004G031700 Sobic001G477800--Sobic001G094000 Sobic001G544200 Sobic001G544200 Sobic001G477800--Sobic001G544200 Sobic001G543900 Sobic001G543900 Sobic001G477800--Sobic001G543900 Sobic001G477800--Sobic006G080300 Sobic001G477800--Sobic009G040700 Sobic001G477800--Sobic007G011400 Sobic006G009400 Sobic006G009400 Sobic001G477800--Sobic006G009400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.