Gene annotation
Transcriptome id Sobic.004G196700.1
Synonym Sb04g024360
Functional annotation expressed protein
UniProt C5XWD5
Pfam PF01363
Panther DB PTHR22835 PTHR22835:SF225
NCBI CDD KOG1818; Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G61690 : phosphoinositide binding
RAP-DB (Rice) LOC_Os03g46710.1 : expressed protein
MaizeGDB (Corn) Zm00025a021366 , Zm00025a054559
Brachypodium KQK00082
Barley -
Wheat TraesCS5A02G472700 , TraesCS5A02G472700 , TraesCS5A02G472700 , TraesCS5D02G485400 , TraesCS5B02G485600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
2 Sobic.007G078000 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
3 Sobic.005G149500 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
4 Sobic.007G137900 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
5 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
6 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
7 Sobic.001G477800 expressed protein -
8 Sobic.006G082600 OsFBX133 - F-box domain containing protein, expressed K10295: F-box protein 9
9 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
10 Sobic.003G268300 surp module family protein, putative, expressed -
11 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
12 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
13 Sobic.001G162300 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
14 Sobic.007G178700 - -
15 Sobic.005G177800 helix-loop-helix DNA-binding domain containing protein, expressed -
16 Sobic.010G026400 BUD13, putative, expressed K13106: BUD13, pre-mRNA-splicing factor CWC26
17 Sobic.001G094000 expressed protein -
18 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
19 Sobic.005G045300 PX domain containing protein, putative, expressed K17925: sorting nexin-13
20 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein


Gene co-expression network
sample Sobic004G196700 Sobic004G196700 Sobic007G185900 Sobic007G185900 Sobic004G196700--Sobic007G185900 Sobic007G078000 Sobic007G078000 Sobic004G196700--Sobic007G078000 Sobic005G149500 Sobic005G149500 Sobic004G196700--Sobic005G149500 Sobic007G137900 Sobic007G137900 Sobic004G196700--Sobic007G137900 Sobic002G157300 Sobic002G157300 Sobic004G196700--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic004G196700--Sobic003G187400 Sobic001G477800 Sobic001G477800 Sobic004G196700--Sobic001G477800 Sobic006G082600 Sobic006G082600 Sobic004G196700--Sobic006G082600 Sobic009G040700 Sobic009G040700 Sobic004G196700--Sobic009G040700 Sobic007G185900--Sobic004G196700 Sobic007G185900--Sobic002G157300 Sobic007G185900--Sobic007G078000 Sobic010G260500 Sobic010G260500 Sobic007G185900--Sobic010G260500 Sobic002G313300 Sobic002G313300 Sobic007G185900--Sobic002G313300 Sobic008G054500 Sobic008G054500 Sobic007G185900--Sobic008G054500 Sobic003G397800 Sobic003G397800 Sobic007G185900--Sobic003G397800 Sobic007G185900--Sobic005G149500 Sobic007G185900--Sobic003G187400 Sobic003G333600 Sobic003G333600 Sobic007G078000--Sobic003G333600 Sobic007G078000--Sobic004G196700 Sobic007G078000--Sobic007G185900 Sobic007G078000--Sobic010G260500 Sobic001G424700 Sobic001G424700 Sobic007G078000--Sobic001G424700 Sobic007G078000--Sobic005G149500 Sobic001G372700 Sobic001G372700 Sobic007G078000--Sobic001G372700 Sobic001G451000 Sobic001G451000 Sobic007G078000--Sobic001G451000 Sobic007G078000--Sobic006G082600 Sobic005G149500--Sobic003G187400 Sobic005G149500--Sobic002G157300 Sobic005G149500--Sobic009G040700 Sobic005G149500--Sobic004G196700 Sobic007G011400 Sobic007G011400 Sobic005G149500--Sobic007G011400 Sobic006G060100 Sobic006G060100 Sobic005G149500--Sobic006G060100 Sobic005G149500--Sobic007G185900 Sobic005G149500--Sobic007G137900 Sobic005G149500--Sobic007G078000 Sobic001G251700 Sobic001G251700 Sobic007G137900--Sobic001G251700 Sobic007G137900--Sobic002G157300 Sobic007G137900--Sobic004G196700 Sobic003G200200 Sobic003G200200 Sobic007G137900--Sobic003G200200 Sobic003G170100 Sobic003G170100 Sobic007G137900--Sobic003G170100 Sobic004G349900 Sobic004G349900 Sobic007G137900--Sobic004G349900 Sobic007G137900--Sobic005G149500 Sobic007G137900--Sobic007G011400 Sobic002G157000 Sobic002G157000 Sobic007G137900--Sobic002G157000 Sobic010G026400 Sobic010G026400 Sobic002G157300--Sobic010G026400 Sobic002G157300--Sobic003G187400 Sobic002G157300--Sobic007G011400 Sobic002G157300--Sobic005G149500 Sobic001G094000 Sobic001G094000 Sobic002G157300--Sobic001G094000 Sobic002G157300--Sobic010G260500 Sobic002G157300--Sobic007G185900 Sobic010G263800 Sobic010G263800 Sobic002G157300--Sobic010G263800 Sobic006G173100 Sobic006G173100 Sobic002G157300--Sobic006G173100 Sobic003G187400--Sobic002G157300 Sobic003G187400--Sobic005G149500 Sobic003G187400--Sobic009G040700 Sobic003G187400--Sobic001G094000 Sobic003G187400--Sobic006G173100 Sobic003G187400--Sobic006G060100 Sobic003G401000 Sobic003G401000 Sobic003G187400--Sobic003G401000 Sobic003G187400--Sobic004G196700 Sobic007G104800 Sobic007G104800 Sobic003G187400--Sobic007G104800 Sobic001G477800--Sobic002G313300 Sobic004G031700 Sobic004G031700 Sobic001G477800--Sobic004G031700 Sobic001G477800--Sobic001G094000 Sobic001G544200 Sobic001G544200 Sobic001G477800--Sobic001G544200 Sobic001G543900 Sobic001G543900 Sobic001G477800--Sobic001G543900 Sobic006G080300 Sobic006G080300 Sobic001G477800--Sobic006G080300 Sobic001G477800--Sobic009G040700 Sobic001G477800--Sobic007G011400 Sobic006G009400 Sobic006G009400 Sobic001G477800--Sobic006G009400 Sobic001G162300 Sobic001G162300 Sobic006G082600--Sobic001G162300 Sobic007G178700 Sobic007G178700 Sobic006G082600--Sobic007G178700 Sobic007G037100 Sobic007G037100 Sobic006G082600--Sobic007G037100 Sobic006G082600--Sobic001G251700 Sobic006G082600--Sobic004G196700 Sobic009G134500 Sobic009G134500 Sobic006G082600--Sobic009G134500 Sobic010G124001 Sobic010G124001 Sobic006G082600--Sobic010G124001 Sobic009G127900 Sobic009G127900 Sobic006G082600--Sobic009G127900 Sobic006G082600--Sobic002G157000 Sobic009G040700--Sobic001G094000 Sobic009G040700--Sobic003G187400 Sobic009G040700--Sobic005G149500 Sobic009G040700--Sobic007G011400 Sobic009G040700--Sobic002G157300 Sobic009G040700--Sobic001G477800 Sobic006G145000 Sobic006G145000 Sobic009G040700--Sobic006G145000 Sobic009G040700--Sobic004G196700 Sobic008G078100 Sobic008G078100 Sobic009G040700--Sobic008G078100
Octagon: transcription factors


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