Gene annotation
Transcriptome id Sobic.003G187400.1,Sobic.003G187400.4,Sobic.003G187400.2,Sobic.003G187400.3
Synonym Sb03g025240
Functional annotation -
UniProt A0A1B6Q457 , A0A1B6Q477 , A0A1B6Q486
Pfam PF00397 PF04851 PF00271 PF04851 PF00271
Panther DB PTHR24031 PTHR24031:SF244
NCBI CDD -
KEGG Orthology K12823; DDX5, ATP-dependent RNA helicase DDX5/DBP2
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding GO:0005515protein binding GO:0016787hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G01540 : DEAD box RNA helicase 1
RAP-DB (Rice) LOC_Os01g36860.1,LOC_Os01g07740.3,LOC_Os01g36860.2 : DEAD-box ATP-dependent RNA helicase 14, putative, expressed,DEAD-box ATP-dependent RNA helicase 40, putative, expressed
MaizeGDB (Corn) Zm00025a028788 , Zm00025a038335
Brachypodium KQK08261 , KQK08263 , KQK08262
Barley -
Wheat TraesCS3D02G202500 , TraesCS3D02G202500 , TraesCS3D02G202500 , TraesCS3A02G100200 , TraesCS3D02G100900 , TraesCS3B02G117000 , TraesCS3B02G230800 , TraesCS3B02G230800 , TraesCS3A02G194200 , TraesCS3A02G194200
Populus -


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cDNA sequences
Sobic.003G187400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
2 Sobic.005G149500 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
3 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
4 Sobic.001G094000 expressed protein -
5 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
6 Sobic.006G060100 glutaredoxin, putative, expressed K17479: glutaredoxin domain-containing cysteine-rich protein 1
7 Sobic.003G401000 adaptin, putative, expressed K12400: AP-4 complex subunit epsilon-1
8 Sobic.004G196700 expressed protein -
9 Sobic.007G104800 expressed protein -
10 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
11 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
12 Sobic.008G078100 EDM2, putative, expressed -
13 Sobic.007G137900 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
14 Sobic.010G026400 BUD13, putative, expressed K13106: BUD13, pre-mRNA-splicing factor CWC26
15 Sobic.007G118600 mitochondrial carrier protein, putative, expressed K15119: solute carrier family 25, member 39/40
16 Sobic.006G183800 KH domain containing protein, putative, expressed K13095: splicing factor 1
17 Sobic.004G205600 bromodomain domain containing protein, expressed -
18 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
19 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
20 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2


Gene co-expression network
sample Sobic003G187400 Sobic003G187400 Sobic002G157300 Sobic002G157300 Sobic003G187400--Sobic002G157300 Sobic005G149500 Sobic005G149500 Sobic003G187400--Sobic005G149500 Sobic009G040700 Sobic009G040700 Sobic003G187400--Sobic009G040700 Sobic001G094000 Sobic001G094000 Sobic003G187400--Sobic001G094000 Sobic006G173100 Sobic006G173100 Sobic003G187400--Sobic006G173100 Sobic006G060100 Sobic006G060100 Sobic003G187400--Sobic006G060100 Sobic003G401000 Sobic003G401000 Sobic003G187400--Sobic003G401000 Sobic004G196700 Sobic004G196700 Sobic003G187400--Sobic004G196700 Sobic007G104800 Sobic007G104800 Sobic003G187400--Sobic007G104800 Sobic010G026400 Sobic010G026400 Sobic002G157300--Sobic010G026400 Sobic002G157300--Sobic003G187400 Sobic007G011400 Sobic007G011400 Sobic002G157300--Sobic007G011400 Sobic002G157300--Sobic005G149500 Sobic002G157300--Sobic001G094000 Sobic010G260500 Sobic010G260500 Sobic002G157300--Sobic010G260500 Sobic007G185900 Sobic007G185900 Sobic002G157300--Sobic007G185900 Sobic010G263800 Sobic010G263800 Sobic002G157300--Sobic010G263800 Sobic002G157300--Sobic006G173100 Sobic005G149500--Sobic003G187400 Sobic005G149500--Sobic002G157300 Sobic005G149500--Sobic009G040700 Sobic005G149500--Sobic004G196700 Sobic005G149500--Sobic007G011400 Sobic005G149500--Sobic006G060100 Sobic005G149500--Sobic007G185900 Sobic007G137900 Sobic007G137900 Sobic005G149500--Sobic007G137900 Sobic007G078000 Sobic007G078000 Sobic005G149500--Sobic007G078000 Sobic009G040700--Sobic001G094000 Sobic009G040700--Sobic003G187400 Sobic009G040700--Sobic005G149500 Sobic009G040700--Sobic007G011400 Sobic009G040700--Sobic002G157300 Sobic001G477800 Sobic001G477800 Sobic009G040700--Sobic001G477800 Sobic006G145000 Sobic006G145000 Sobic009G040700--Sobic006G145000 Sobic009G040700--Sobic004G196700 Sobic008G078100 Sobic008G078100 Sobic009G040700--Sobic008G078100 Sobic001G094000--Sobic007G011400 Sobic001G094000--Sobic009G040700 Sobic001G094000--Sobic001G477800 Sobic002G157000 Sobic002G157000 Sobic001G094000--Sobic002G157000 Sobic003G268300 Sobic003G268300 Sobic001G094000--Sobic003G268300 Sobic001G094000--Sobic002G157300 Sobic001G094000--Sobic003G187400 Sobic004G031700 Sobic004G031700 Sobic001G094000--Sobic004G031700 Sobic006G080300 Sobic006G080300 Sobic001G094000--Sobic006G080300 Sobic001G090400 Sobic001G090400 Sobic006G173100--Sobic001G090400 Sobic006G173100--Sobic002G157300 Sobic006G173100--Sobic003G187400 Sobic002G197100 Sobic002G197100 Sobic006G173100--Sobic002G197100 Sobic004G021100 Sobic004G021100 Sobic006G173100--Sobic004G021100 Sobic006G032400 Sobic006G032400 Sobic006G173100--Sobic006G032400 Sobic001G512700 Sobic001G512700 Sobic006G173100--Sobic001G512700 Sobic004G067700 Sobic004G067700 Sobic006G173100--Sobic004G067700 Sobic002G370900 Sobic002G370900 Sobic006G173100--Sobic002G370900 Sobic006G060100--Sobic003G187400 Sobic006G060100--Sobic003G268300 Sobic006G060100--Sobic005G149500 Sobic003G176400 Sobic003G176400 Sobic006G060100--Sobic003G176400 Sobic006G060100--Sobic001G094000 Sobic003G422300 Sobic003G422300 Sobic006G060100--Sobic003G422300 Sobic006G060100--Sobic006G080300 Sobic006G060100--Sobic002G157300 Sobic006G060100--Sobic007G011400 Sobic002G158700 Sobic002G158700 Sobic003G401000--Sobic002G158700 Sobic003G401000--Sobic003G187400 Sobic003G401000--Sobic002G157300 Sobic009G257800 Sobic009G257800 Sobic003G401000--Sobic009G257800 Sobic001G155000 Sobic001G155000 Sobic003G401000--Sobic001G155000 Sobic003G401000--Sobic009G040700 Sobic003G401000--Sobic001G094000 Sobic006G028200 Sobic006G028200 Sobic003G401000--Sobic006G028200 Sobic003G008500 Sobic003G008500 Sobic003G401000--Sobic003G008500 Sobic004G196700--Sobic007G185900 Sobic004G196700--Sobic007G078000 Sobic004G196700--Sobic005G149500 Sobic004G196700--Sobic007G137900 Sobic004G196700--Sobic002G157300 Sobic004G196700--Sobic003G187400 Sobic004G196700--Sobic001G477800 Sobic006G082600 Sobic006G082600 Sobic004G196700--Sobic006G082600 Sobic004G196700--Sobic009G040700 Sobic001G497300 Sobic001G497300 Sobic007G104800--Sobic001G497300 Sobic007G104800--Sobic004G021100 Sobic001G119300 Sobic001G119300 Sobic007G104800--Sobic001G119300 Sobic007G104800--Sobic003G187400 Sobic007G200600 Sobic007G200600 Sobic007G104800--Sobic007G200600 Sobic007G104800--Sobic001G512700 Sobic004G205600 Sobic004G205600 Sobic007G104800--Sobic004G205600 Sobic007G026300 Sobic007G026300 Sobic007G104800--Sobic007G026300 Sobic001G107500 Sobic001G107500 Sobic007G104800--Sobic001G107500
Octagon: transcription factors


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