Gene annotation
Transcriptome id Sobic.003G401000.1
Synonym Sb03g043730
Functional annotation adaptin, putative, expressed
UniProt C5XG75
Pfam PF01602
Panther DB PTHR22780 PTHR22780:SF13
NCBI CDD -
KEGG Orthology K12400; AP-4 complex subunit epsilon-1
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT1G31730 : Adaptin family protein
RAP-DB (Rice) LOC_Os01g68750.1 : adaptin, putative, expressed
MaizeGDB (Corn) Zm00025a026296 , Zm00025a039347
Brachypodium KQK11186
Barley HORVU3Hr1G093320.3 , HORVU3Hr1G093320.1 , HORVU3Hr1G093320.2 , HORVU3Hr1G093320.4 , HORVU3Hr1G093320.5 , HORVU3Hr1G093320.6
Wheat TraesCS3B02G457300 , TraesCS3A02G421500 , TraesCS3D02G417200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
2 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
3 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
4 Sobic.009G257800 sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
5 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
6 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
7 Sobic.001G094000 expressed protein -
8 Sobic.006G028200 glycine-rich protein, putative, expressed -
9 Sobic.003G008500 VHS and GAT domain containing protein, expressed -
10 Sobic.001G296500 ARABIDILLO-1, putative, expressed -
11 Sobic.004G345700 TBC domain containing protein, expressed -
12 Sobic.001G514000 OsFBL10 - F-box domain and LRR containing protein, expressed -
13 Sobic.007G061700 vacuolar protein sorting-associated protein 18, putative, expressed -
14 Sobic.008G024600 expressed protein -
15 Sobic.004G057400 copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
16 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
17 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
18 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
19 Sobic.010G166000 ESP1, putative, expressed -
20 Sobic.010G056000 GAGA-binding protein, putative, expressed -


Gene co-expression network
sample Sobic003G401000 Sobic003G401000 Sobic002G158700 Sobic002G158700 Sobic003G401000--Sobic002G158700 Sobic003G187400 Sobic003G187400 Sobic003G401000--Sobic003G187400 Sobic002G157300 Sobic002G157300 Sobic003G401000--Sobic002G157300 Sobic009G257800 Sobic009G257800 Sobic003G401000--Sobic009G257800 Sobic001G155000 Sobic001G155000 Sobic003G401000--Sobic001G155000 Sobic009G040700 Sobic009G040700 Sobic003G401000--Sobic009G040700 Sobic001G094000 Sobic001G094000 Sobic003G401000--Sobic001G094000 Sobic006G028200 Sobic006G028200 Sobic003G401000--Sobic006G028200 Sobic003G008500 Sobic003G008500 Sobic003G401000--Sobic003G008500 Sobic002G158700--Sobic003G401000 Sobic001G464200 Sobic001G464200 Sobic002G158700--Sobic001G464200 Sobic001G167200 Sobic001G167200 Sobic002G158700--Sobic001G167200 Sobic004G031700 Sobic004G031700 Sobic002G158700--Sobic004G031700 Sobic003G445400 Sobic003G445400 Sobic002G158700--Sobic003G445400 Sobic007G000800 Sobic007G000800 Sobic002G158700--Sobic007G000800 Sobic007G061700 Sobic007G061700 Sobic002G158700--Sobic007G061700 Sobic008G149800 Sobic008G149800 Sobic002G158700--Sobic008G149800 Sobic002G396000 Sobic002G396000 Sobic002G158700--Sobic002G396000 Sobic003G187400--Sobic002G157300 Sobic005G149500 Sobic005G149500 Sobic003G187400--Sobic005G149500 Sobic003G187400--Sobic009G040700 Sobic003G187400--Sobic001G094000 Sobic006G173100 Sobic006G173100 Sobic003G187400--Sobic006G173100 Sobic006G060100 Sobic006G060100 Sobic003G187400--Sobic006G060100 Sobic003G187400--Sobic003G401000 Sobic004G196700 Sobic004G196700 Sobic003G187400--Sobic004G196700 Sobic007G104800 Sobic007G104800 Sobic003G187400--Sobic007G104800 Sobic010G026400 Sobic010G026400 Sobic002G157300--Sobic010G026400 Sobic002G157300--Sobic003G187400 Sobic007G011400 Sobic007G011400 Sobic002G157300--Sobic007G011400 Sobic002G157300--Sobic005G149500 Sobic002G157300--Sobic001G094000 Sobic010G260500 Sobic010G260500 Sobic002G157300--Sobic010G260500 Sobic007G185900 Sobic007G185900 Sobic002G157300--Sobic007G185900 Sobic010G263800 Sobic010G263800 Sobic002G157300--Sobic010G263800 Sobic002G157300--Sobic006G173100 Sobic009G257800--Sobic003G401000 Sobic006G267300 Sobic006G267300 Sobic009G257800--Sobic006G267300 Sobic003G081000 Sobic003G081000 Sobic009G257800--Sobic003G081000 Sobic004G283000 Sobic004G283000 Sobic009G257800--Sobic004G283000 Sobic004G057400 Sobic004G057400 Sobic009G257800--Sobic004G057400 Sobic002G090800 Sobic002G090800 Sobic009G257800--Sobic002G090800 Sobic006G252700 Sobic006G252700 Sobic009G257800--Sobic006G252700 Sobic004G325400 Sobic004G325400 Sobic009G257800--Sobic004G325400 Sobic001G090400 Sobic001G090400 Sobic009G257800--Sobic001G090400 Sobic008G047800 Sobic008G047800 Sobic001G155000--Sobic008G047800 Sobic002G006900 Sobic002G006900 Sobic001G155000--Sobic002G006900 Sobic003G200200 Sobic003G200200 Sobic001G155000--Sobic003G200200 Sobic009G040600 Sobic009G040600 Sobic001G155000--Sobic009G040600 Sobic001G222500 Sobic001G222500 Sobic001G155000--Sobic001G222500 Sobic007G011300 Sobic007G011300 Sobic001G155000--Sobic007G011300 Sobic008G153000 Sobic008G153000 Sobic001G155000--Sobic008G153000 Sobic010G053800 Sobic010G053800 Sobic001G155000--Sobic010G053800 Sobic007G217000 Sobic007G217000 Sobic001G155000--Sobic007G217000 Sobic009G040700--Sobic001G094000 Sobic009G040700--Sobic003G187400 Sobic009G040700--Sobic005G149500 Sobic009G040700--Sobic007G011400 Sobic009G040700--Sobic002G157300 Sobic001G477800 Sobic001G477800 Sobic009G040700--Sobic001G477800 Sobic006G145000 Sobic006G145000 Sobic009G040700--Sobic006G145000 Sobic009G040700--Sobic004G196700 Sobic008G078100 Sobic008G078100 Sobic009G040700--Sobic008G078100 Sobic001G094000--Sobic007G011400 Sobic001G094000--Sobic009G040700 Sobic001G094000--Sobic001G477800 Sobic002G157000 Sobic002G157000 Sobic001G094000--Sobic002G157000 Sobic003G268300 Sobic003G268300 Sobic001G094000--Sobic003G268300 Sobic001G094000--Sobic002G157300 Sobic001G094000--Sobic003G187400 Sobic001G094000--Sobic004G031700 Sobic006G080300 Sobic006G080300 Sobic001G094000--Sobic006G080300 Sobic006G028200--Sobic003G401000 Sobic006G028200--Sobic001G094000 Sobic006G028200--Sobic009G040700 Sobic010G189000 Sobic010G189000 Sobic006G028200--Sobic010G189000 Sobic006G028200--Sobic003G187400 Sobic006G046700 Sobic006G046700 Sobic006G028200--Sobic006G046700 Sobic001G296500 Sobic001G296500 Sobic006G028200--Sobic001G296500 Sobic003G036900 Sobic003G036900 Sobic006G028200--Sobic003G036900 Sobic006G028200--Sobic001G477800 Sobic003G008500--Sobic002G157300 Sobic006G082900 Sobic006G082900 Sobic003G008500--Sobic006G082900 Sobic002G370900 Sobic002G370900 Sobic003G008500--Sobic002G370900 Sobic004G067700 Sobic004G067700 Sobic003G008500--Sobic004G067700 Sobic003G008500--Sobic003G401000 Sobic001G514000 Sobic001G514000 Sobic003G008500--Sobic001G514000 Sobic003G008500--Sobic006G173100 Sobic006G202200 Sobic006G202200 Sobic003G008500--Sobic006G202200 Sobic006G128800 Sobic006G128800 Sobic003G008500--Sobic006G128800
Octagon: transcription factors


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