Gene annotation
Transcriptome id Sobic.002G158700.2,Sobic.002G158700.1
Synonym ATTAF6, TAFII59, Sb02g020250, TAF6
Functional annotation TATA binding protein-associated factor, putative, expressed
UniProt C5X8C7 , A0A1B6QBQ0
Pfam PF02969 PF07571 PF07571
Panther DB PTHR10221 PTHR10221:SF11
NCBI CDD KOG2549; Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA)
KEGG Orthology K03131; transcription initiation factor TFIID subunit 6
Gene Ontology GO:0005634; nucleus GO:0006352DNA-templated transcription, initiation GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G04950 : TATA BOX ASSOCIATED FACTOR II 59
RAP-DB (Rice) LOC_Os01g32750.1 : TATA binding protein-associated factor, putative, expressed
MaizeGDB (Corn) Zm00025a052851
Brachypodium KQJ89696 , KQJ89697
Barley HORVU1Hr1G000620.11 , HORVU1Hr1G000620.10 , HORVU1Hr1G000620.9 , HORVU1Hr1G000620.8 , HORVU1Hr1G000620.3 , HORVU1Hr1G000620.2 , HORVU1Hr1G000620.1 , HORVU1Hr1G000620.7 , HORVU1Hr1G000620.6 , HORVU1Hr1G000620.5 , HORVU1Hr1G000620.4
Wheat TraesCS1D02G002300 , TraesCS1D02G002300 , TraesCS1D02G002300 , TraesCS1A02G005600 , TraesCS1A02G005600 , TraesCS1A02G005600 , TraesCS1A02G005600 , TraesCS1A02G005600 , TraesCS1A02G005600 , TraesCS1B02G007800 , TraesCS1B02G007800 , TraesCS1B02G007800 , TraesCS1B02G007800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G401000 adaptin, putative, expressed K12400: AP-4 complex subunit epsilon-1
2 Sobic.001G464200 flap endonuclease, putative, expressed K10846: ERCC5, XPG, DNA excision repair protein ERCC-5
3 Sobic.001G167200 DNA-directed polymerase, putative, expressed K03511: DNA polymerase kappa
4 Sobic.004G031700 expressed protein -
5 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
6 Sobic.007G000800 expressed protein -
7 Sobic.007G061700 vacuolar protein sorting-associated protein 18, putative, expressed -
8 Sobic.008G149800 histone acetyltransferase HAC5, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
9 Sobic.002G396000 XPA-binding protein 2, putative, expressed K12867: SYF1, pre-mRNA-splicing factor SYF1
10 Sobic.008G024600 expressed protein -
11 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
12 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
13 Sobic.001G094000 expressed protein -
14 Sobic.010G166000 ESP1, putative, expressed -
15 Sobic.008G067600 protein kinase PKN/PRK1, effector, putative, expressed -
16 Sobic.005G015900 dnaJ domain containing protein, expressed -
17 Sobic.001G544200 endonuclease, putative, expressed K10848: ERCC4, DNA excision repair protein ERCC-4
18 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
19 Sobic.006G032400 expressed protein -
20 Sobic.001G176200 FHA domain containing protein, putative, expressed K13216: PPP1R8, nuclear inhibitor of protein phosphatase 1


Gene co-expression network
sample Sobic002G158700 Sobic002G158700 Sobic003G401000 Sobic003G401000 Sobic002G158700--Sobic003G401000 Sobic001G464200 Sobic001G464200 Sobic002G158700--Sobic001G464200 Sobic001G167200 Sobic001G167200 Sobic002G158700--Sobic001G167200 Sobic004G031700 Sobic004G031700 Sobic002G158700--Sobic004G031700 Sobic003G445400 Sobic003G445400 Sobic002G158700--Sobic003G445400 Sobic007G000800 Sobic007G000800 Sobic002G158700--Sobic007G000800 Sobic007G061700 Sobic007G061700 Sobic002G158700--Sobic007G061700 Sobic008G149800 Sobic008G149800 Sobic002G158700--Sobic008G149800 Sobic002G396000 Sobic002G396000 Sobic002G158700--Sobic002G396000 Sobic003G401000--Sobic002G158700 Sobic003G187400 Sobic003G187400 Sobic003G401000--Sobic003G187400 Sobic002G157300 Sobic002G157300 Sobic003G401000--Sobic002G157300 Sobic009G257800 Sobic009G257800 Sobic003G401000--Sobic009G257800 Sobic001G155000 Sobic001G155000 Sobic003G401000--Sobic001G155000 Sobic009G040700 Sobic009G040700 Sobic003G401000--Sobic009G040700 Sobic001G094000 Sobic001G094000 Sobic003G401000--Sobic001G094000 Sobic006G028200 Sobic006G028200 Sobic003G401000--Sobic006G028200 Sobic003G008500 Sobic003G008500 Sobic003G401000--Sobic003G008500 Sobic001G464200--Sobic002G158700 Sobic001G544200 Sobic001G544200 Sobic001G464200--Sobic001G544200 Sobic001G464200--Sobic004G031700 Sobic001G477800 Sobic001G477800 Sobic001G464200--Sobic001G477800 Sobic006G128900 Sobic006G128900 Sobic001G464200--Sobic006G128900 Sobic002G144966 Sobic002G144966 Sobic001G464200--Sobic002G144966 Sobic001G511500 Sobic001G511500 Sobic001G464200--Sobic001G511500 Sobic010G263800 Sobic010G263800 Sobic001G464200--Sobic010G263800 Sobic001G464200--Sobic003G445400 Sobic001G167200--Sobic002G158700 Sobic009G210500 Sobic009G210500 Sobic001G167200--Sobic009G210500 Sobic004G018300 Sobic004G018300 Sobic001G167200--Sobic004G018300 Sobic005G015900 Sobic005G015900 Sobic001G167200--Sobic005G015900 Sobic008G011100 Sobic008G011100 Sobic001G167200--Sobic008G011100 Sobic001G090400 Sobic001G090400 Sobic001G167200--Sobic001G090400 Sobic001G219600 Sobic001G219600 Sobic001G167200--Sobic001G219600 Sobic010G136600 Sobic010G136600 Sobic001G167200--Sobic010G136600 Sobic010G065300 Sobic010G065300 Sobic001G167200--Sobic010G065300 Sobic009G000500 Sobic009G000500 Sobic004G031700--Sobic009G000500 Sobic004G031700--Sobic003G445400 Sobic004G031700--Sobic001G544200 Sobic004G031700--Sobic001G477800 Sobic006G080300 Sobic006G080300 Sobic004G031700--Sobic006G080300 Sobic004G031700--Sobic006G128900 Sobic004G031700--Sobic001G094000 Sobic004G031700--Sobic001G511500 Sobic004G031700--Sobic002G158700 Sobic003G445400--Sobic004G031700 Sobic003G445400--Sobic009G000500 Sobic008G067600 Sobic008G067600 Sobic003G445400--Sobic008G067600 Sobic003G307000 Sobic003G307000 Sobic003G445400--Sobic003G307000 Sobic003G445400--Sobic002G158700 Sobic003G445400--Sobic006G128900 Sobic007G096000 Sobic007G096000 Sobic003G445400--Sobic007G096000 Sobic003G445400--Sobic001G511500 Sobic008G153000 Sobic008G153000 Sobic003G445400--Sobic008G153000 Sobic007G000800--Sobic002G158700 Sobic003G401100 Sobic003G401100 Sobic007G000800--Sobic003G401100 Sobic007G000800--Sobic008G149800 Sobic010G245000 Sobic010G245000 Sobic007G000800--Sobic010G245000 Sobic002G259800 Sobic002G259800 Sobic007G000800--Sobic002G259800 Sobic007G000800--Sobic001G167200 Sobic004G345700 Sobic004G345700 Sobic007G000800--Sobic004G345700 Sobic008G083000 Sobic008G083000 Sobic007G000800--Sobic008G083000 Sobic008G173100 Sobic008G173100 Sobic007G000800--Sobic008G173100 Sobic007G061700--Sobic008G149800 Sobic007G061700--Sobic002G158700 Sobic004G246100 Sobic004G246100 Sobic007G061700--Sobic004G246100 Sobic007G061700--Sobic003G401000 Sobic006G046700 Sobic006G046700 Sobic007G061700--Sobic006G046700 Sobic001G542700 Sobic001G542700 Sobic007G061700--Sobic001G542700 Sobic007G061700--Sobic008G153000 Sobic007G061700--Sobic001G544200 Sobic007G061700--Sobic004G031700 Sobic006G116100 Sobic006G116100 Sobic008G149800--Sobic006G116100 Sobic008G149800--Sobic008G153000 Sobic008G149800--Sobic007G061700 Sobic002G357700 Sobic002G357700 Sobic008G149800--Sobic002G357700 Sobic002G164300 Sobic002G164300 Sobic008G149800--Sobic002G164300 Sobic008G149800--Sobic004G246100 Sobic008G149800--Sobic002G158700 Sobic005G154500 Sobic005G154500 Sobic008G149800--Sobic005G154500 Sobic008G149800--Sobic001G155000 Sobic002G396000--Sobic002G158700 Sobic002G396000--Sobic006G128900 Sobic002G396000--Sobic007G096000 Sobic003G280800 Sobic003G280800 Sobic002G396000--Sobic003G280800 Sobic002G396000--Sobic001G511500 Sobic002G396000--Sobic009G210500 Sobic002G396000--Sobic004G018300 Sobic008G131000 Sobic008G131000 Sobic002G396000--Sobic008G131000 Sobic002G396000--Sobic001G090400
Octagon: transcription factors


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