Gene annotation
Transcriptome id Sobic.007G000800.1
Synonym Sb07g000260
Functional annotation expressed protein
UniProt C5YLC5
Pfam PF14778
Panther DB PTHR33966 PTHR33966:SF1
NCBI CDD KOG4703; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G28670 : oxidoreductase, zinc-binding dehydrogenase family protein
RAP-DB (Rice) LOC_Os10g11110.1 : expressed protein
MaizeGDB (Corn) Zm00025a033653 , Zm00025a040107
Brachypodium KQJ94748
Barley HORVU7Hr1G078750.10 , HORVU7Hr1G078750.12 , HORVU7Hr1G078750.13 , HORVU7Hr1G078750.14 , HORVU7Hr1G078750.8 , HORVU7Hr1G078750.9 , HORVU7Hr1G078750.2 , HORVU7Hr1G078750.3 , HORVU7Hr1G078750.1 , HORVU7Hr1G078750.6 , HORVU7Hr1G078750.7 , HORVU7Hr1G078750.4 , HORVU7Hr1G078750.5
Wheat TraesCS7D02G325900 , TraesCS7D02G325900 , TraesCS7A02G329000 , TraesCS7A02G329000 , TraesCS7B02G229700 , TraesCS7B02G229700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G000800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
2 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
3 Sobic.008G149800 histone acetyltransferase HAC5, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
4 Sobic.010G245000 DTW domain containing protein, putative, expressed -
5 Sobic.002G259800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
6 Sobic.001G167200 DNA-directed polymerase, putative, expressed K03511: DNA polymerase kappa
7 Sobic.004G345700 TBC domain containing protein, expressed -
8 Sobic.008G083000 ZOS12-03 - C2H2 zinc finger protein, expressed -
9 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
10 Sobic.004G246100 nicalin, putative, expressed K06171: nicastrin
11 Sobic.007G061700 vacuolar protein sorting-associated protein 18, putative, expressed -
12 Sobic.003G401000 adaptin, putative, expressed K12400: AP-4 complex subunit epsilon-1
13 Sobic.003G289400 farnesyltransferase subunit beta, putative, expressed K05954: protein farnesyltransferase subunit beta
14 Sobic.008G131000 domain of unknown function family protein, expressed -
15 Sobic.006G138000 expressed protein -
16 Sobic.010G204400 phox domain-containing protein, putative, expressed -
17 Sobic.001G246500 GTPase of unknown function domain containing protein, putative, expressed -
18 Sobic.006G217200 PPR repeat domain containing protein, putative, expressed -
19 Sobic.008G100100 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
20 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4


Gene co-expression network
sample Sobic007G000800 Sobic007G000800 Sobic002G158700 Sobic002G158700 Sobic007G000800--Sobic002G158700 Sobic003G401100 Sobic003G401100 Sobic007G000800--Sobic003G401100 Sobic008G149800 Sobic008G149800 Sobic007G000800--Sobic008G149800 Sobic010G245000 Sobic010G245000 Sobic007G000800--Sobic010G245000 Sobic002G259800 Sobic002G259800 Sobic007G000800--Sobic002G259800 Sobic001G167200 Sobic001G167200 Sobic007G000800--Sobic001G167200 Sobic004G345700 Sobic004G345700 Sobic007G000800--Sobic004G345700 Sobic008G083000 Sobic008G083000 Sobic007G000800--Sobic008G083000 Sobic008G173100 Sobic008G173100 Sobic007G000800--Sobic008G173100 Sobic003G401000 Sobic003G401000 Sobic002G158700--Sobic003G401000 Sobic001G464200 Sobic001G464200 Sobic002G158700--Sobic001G464200 Sobic002G158700--Sobic001G167200 Sobic004G031700 Sobic004G031700 Sobic002G158700--Sobic004G031700 Sobic003G445400 Sobic003G445400 Sobic002G158700--Sobic003G445400 Sobic002G158700--Sobic007G000800 Sobic007G061700 Sobic007G061700 Sobic002G158700--Sobic007G061700 Sobic002G158700--Sobic008G149800 Sobic002G396000 Sobic002G396000 Sobic002G158700--Sobic002G396000 Sobic010G236400 Sobic010G236400 Sobic003G401100--Sobic010G236400 Sobic004G084300 Sobic004G084300 Sobic003G401100--Sobic004G084300 Sobic001G281600 Sobic001G281600 Sobic003G401100--Sobic001G281600 Sobic003G081000 Sobic003G081000 Sobic003G401100--Sobic003G081000 Sobic007G027700 Sobic007G027700 Sobic003G401100--Sobic007G027700 Sobic001G143500 Sobic001G143500 Sobic003G401100--Sobic001G143500 Sobic003G401100--Sobic007G000800 Sobic004G274200 Sobic004G274200 Sobic003G401100--Sobic004G274200 Sobic003G241200 Sobic003G241200 Sobic003G401100--Sobic003G241200 Sobic006G116100 Sobic006G116100 Sobic008G149800--Sobic006G116100 Sobic008G153000 Sobic008G153000 Sobic008G149800--Sobic008G153000 Sobic008G149800--Sobic007G061700 Sobic002G357700 Sobic002G357700 Sobic008G149800--Sobic002G357700 Sobic002G164300 Sobic002G164300 Sobic008G149800--Sobic002G164300 Sobic004G246100 Sobic004G246100 Sobic008G149800--Sobic004G246100 Sobic008G149800--Sobic002G158700 Sobic005G154500 Sobic005G154500 Sobic008G149800--Sobic005G154500 Sobic001G155000 Sobic001G155000 Sobic008G149800--Sobic001G155000 Sobic002G056701 Sobic002G056701 Sobic010G245000--Sobic002G056701 Sobic001G176200 Sobic001G176200 Sobic010G245000--Sobic001G176200 Sobic010G245000--Sobic004G345700 Sobic010G245000--Sobic004G084300 Sobic010G245000--Sobic005G154500 Sobic002G264200 Sobic002G264200 Sobic010G245000--Sobic002G264200 Sobic010G245000--Sobic008G173100 Sobic010G245000--Sobic003G241200 Sobic002G260400 Sobic002G260400 Sobic010G245000--Sobic002G260400 Sobic009G195200 Sobic009G195200 Sobic002G259800--Sobic009G195200 Sobic001G306900 Sobic001G306900 Sobic002G259800--Sobic001G306900 Sobic005G015900 Sobic005G015900 Sobic002G259800--Sobic005G015900 Sobic003G394300 Sobic003G394300 Sobic002G259800--Sobic003G394300 Sobic006G248500 Sobic006G248500 Sobic002G259800--Sobic006G248500 Sobic001G246500 Sobic001G246500 Sobic002G259800--Sobic001G246500 Sobic005G084100 Sobic005G084100 Sobic002G259800--Sobic005G084100 Sobic002G423200 Sobic002G423200 Sobic002G259800--Sobic002G423200 Sobic004G156500 Sobic004G156500 Sobic002G259800--Sobic004G156500 Sobic001G167200--Sobic002G158700 Sobic009G210500 Sobic009G210500 Sobic001G167200--Sobic009G210500 Sobic004G018300 Sobic004G018300 Sobic001G167200--Sobic004G018300 Sobic001G167200--Sobic005G015900 Sobic008G011100 Sobic008G011100 Sobic001G167200--Sobic008G011100 Sobic001G090400 Sobic001G090400 Sobic001G167200--Sobic001G090400 Sobic001G219600 Sobic001G219600 Sobic001G167200--Sobic001G219600 Sobic010G136600 Sobic010G136600 Sobic001G167200--Sobic010G136600 Sobic010G065300 Sobic010G065300 Sobic001G167200--Sobic010G065300 Sobic002G197100 Sobic002G197100 Sobic004G345700--Sobic002G197100 Sobic001G514000 Sobic001G514000 Sobic004G345700--Sobic001G514000 Sobic004G007300 Sobic004G007300 Sobic004G345700--Sobic004G007300 Sobic001G408700 Sobic001G408700 Sobic004G345700--Sobic001G408700 Sobic004G345700--Sobic005G154500 Sobic004G345700--Sobic001G176200 Sobic006G092800 Sobic006G092800 Sobic004G345700--Sobic006G092800 Sobic003G205501 Sobic003G205501 Sobic004G345700--Sobic003G205501 Sobic004G345700--Sobic010G245000 Sobic008G083000--Sobic005G084100 Sobic010G279700 Sobic010G279700 Sobic008G083000--Sobic010G279700 Sobic008G131000 Sobic008G131000 Sobic008G083000--Sobic008G131000 Sobic008G083000--Sobic001G281600 Sobic009G050900 Sobic009G050900 Sobic008G083000--Sobic009G050900 Sobic008G083000--Sobic003G401100 Sobic008G083000--Sobic008G011100 Sobic008G083000--Sobic004G018300 Sobic008G083000--Sobic007G000800 Sobic008G173100--Sobic002G260400 Sobic007G090430 Sobic007G090430 Sobic008G173100--Sobic007G090430 Sobic008G173100--Sobic006G116100 Sobic002G063900 Sobic002G063900 Sobic008G173100--Sobic002G063900 Sobic008G173100--Sobic002G264200 Sobic008G173100--Sobic010G236400 Sobic008G173100--Sobic008G153000 Sobic001G311500 Sobic001G311500 Sobic008G173100--Sobic001G311500 Sobic008G173100--Sobic010G245000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.