Gene annotation
Transcriptome id Sobic.002G259800.1,Sobic.002G259800.2
Synonym Sb02g029480
Functional annotation hydroxyproline-rich glycoprotein family protein, putative, expressed
UniProt A0A1W0W5Y4 , C5X5A3
Pfam -
Panther DB PTHR34119 PTHR34119:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G33490 : hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) LOC_Os09g33510.2 : hydroxyproline-rich glycoprotein family protein, putative, expressed
MaizeGDB (Corn) Zm00025a047599 , Zm00025a014325
Brachypodium KQJ90949
Barley HORVU5Hr1G077190.20 , HORVU3Hr1G028250.2 , HORVU5Hr1G077190.9 , HORVU5Hr1G077190.8 , HORVU5Hr1G077190.3 , HORVU5Hr1G077190.2 , HORVU5Hr1G077190.1 , HORVU5Hr1G077190.7 , HORVU5Hr1G077190.6 , HORVU5Hr1G077190.5 , HORVU5Hr1G077190.4 , HORVU4Hr1G008500.3 , HORVU5Hr1G077190.19 , HORVU5Hr1G077190.18 , HORVU4Hr1G008500.2 , HORVU5Hr1G077190.13 , HORVU5Hr1G077190.12 , HORVU5Hr1G077190.11 , HORVU5Hr1G077190.10 , HORVU5Hr1G077190.17 , HORVU5Hr1G077190.16 , HORVU5Hr1G077190.15 , HORVU5Hr1G077190.14 , HORVU4Hr1G008500.1
Wheat TraesCS5D02G299100 , TraesCS5A02G291600 , TraesCS5B02G290700
Populus -


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cDNA sequences
Sobic.002G259800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G195200 ESP1, putative, expressed -
2 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3
3 Sobic.005G015900 dnaJ domain containing protein, expressed -
4 Sobic.003G394300 tetratricopeptide repeat domain containing protein, expressed -
5 Sobic.006G248500 expressed protein -
6 Sobic.001G246500 GTPase of unknown function domain containing protein, putative, expressed -
7 Sobic.005G084100 Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(PubMedID : 31721651)@inactive receptor kinase At1g27190 precursor, putative, expressed -
8 Sobic.002G423200 importin subunit alpha-1b, putative, expressed -
9 Sobic.004G156500 expressed protein -
10 Sobic.009G151200 expressed protein -
11 Sobic.001G469800 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
12 Sobic.007G000800 expressed protein -
13 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
14 Sobic.003G433500 Putative splicing factor(PubMedID : 24356560)@serine/arginine repetitive matrix protein 1, putative, expressed K14325: RNA-binding protein with serine-rich domain 1
15 Sobic.006G013500 hydrolase/ zinc ion binding protein, putative, expressed K15442: TAD3, tRNA-specific adenosine deaminase 3
16 Sobic.006G138000 expressed protein -
17 Sobic.002G264200 RNA recognition motif containing protein, expressed -
18 Sobic.003G307000 RNA recognition motif containing protein, expressed K18667: activating signal cointegrator complex subunit 2
19 Sobic.001G094000 expressed protein -
20 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6


Gene co-expression network
sample Sobic002G259800 Sobic002G259800 Sobic009G195200 Sobic009G195200 Sobic002G259800--Sobic009G195200 Sobic001G306900 Sobic001G306900 Sobic002G259800--Sobic001G306900 Sobic005G015900 Sobic005G015900 Sobic002G259800--Sobic005G015900 Sobic003G394300 Sobic003G394300 Sobic002G259800--Sobic003G394300 Sobic006G248500 Sobic006G248500 Sobic002G259800--Sobic006G248500 Sobic001G246500 Sobic001G246500 Sobic002G259800--Sobic001G246500 Sobic005G084100 Sobic005G084100 Sobic002G259800--Sobic005G084100 Sobic002G423200 Sobic002G423200 Sobic002G259800--Sobic002G423200 Sobic004G156500 Sobic004G156500 Sobic002G259800--Sobic004G156500 Sobic009G195200--Sobic002G259800 Sobic003G433500 Sobic003G433500 Sobic009G195200--Sobic003G433500 Sobic006G267300 Sobic006G267300 Sobic009G195200--Sobic006G267300 Sobic002G264200 Sobic002G264200 Sobic009G195200--Sobic002G264200 Sobic009G195200--Sobic001G246500 Sobic003G355000 Sobic003G355000 Sobic009G195200--Sobic003G355000 Sobic007G091600 Sobic007G091600 Sobic009G195200--Sobic007G091600 Sobic009G195200--Sobic001G306900 Sobic001G226000 Sobic001G226000 Sobic009G195200--Sobic001G226000 Sobic004G138000 Sobic004G138000 Sobic001G306900--Sobic004G138000 Sobic010G065300 Sobic010G065300 Sobic001G306900--Sobic010G065300 Sobic001G303675 Sobic001G303675 Sobic001G306900--Sobic001G303675 Sobic007G065400 Sobic007G065400 Sobic001G306900--Sobic007G065400 Sobic001G511500 Sobic001G511500 Sobic001G306900--Sobic001G511500 Sobic004G145500 Sobic004G145500 Sobic001G306900--Sobic004G145500 Sobic002G153700 Sobic002G153700 Sobic001G306900--Sobic002G153700 Sobic006G013500 Sobic006G013500 Sobic001G306900--Sobic006G013500 Sobic001G094000 Sobic001G094000 Sobic001G306900--Sobic001G094000 Sobic006G032400 Sobic006G032400 Sobic005G015900--Sobic006G032400 Sobic004G031700 Sobic004G031700 Sobic005G015900--Sobic004G031700 Sobic004G219100 Sobic004G219100 Sobic005G015900--Sobic004G219100 Sobic001G176200 Sobic001G176200 Sobic005G015900--Sobic001G176200 Sobic002G320500 Sobic002G320500 Sobic005G015900--Sobic002G320500 Sobic001G090400 Sobic001G090400 Sobic005G015900--Sobic001G090400 Sobic002G158700 Sobic002G158700 Sobic005G015900--Sobic002G158700 Sobic005G015900--Sobic001G303675 Sobic003G445400 Sobic003G445400 Sobic005G015900--Sobic003G445400 Sobic003G394300--Sobic003G445400 Sobic004G084300 Sobic004G084300 Sobic003G394300--Sobic004G084300 Sobic003G307000 Sobic003G307000 Sobic003G394300--Sobic003G307000 Sobic004G088200 Sobic004G088200 Sobic003G394300--Sobic004G088200 Sobic005G021500 Sobic005G021500 Sobic003G394300--Sobic005G021500 Sobic008G067600 Sobic008G067600 Sobic003G394300--Sobic008G067600 Sobic004G158200 Sobic004G158200 Sobic003G394300--Sobic004G158200 Sobic009G000500 Sobic009G000500 Sobic003G394300--Sobic009G000500 Sobic007G078600 Sobic007G078600 Sobic003G394300--Sobic007G078600 Sobic001G469800 Sobic001G469800 Sobic006G248500--Sobic001G469800 Sobic006G248500--Sobic002G259800 Sobic006G248500--Sobic003G433500 Sobic009G151200 Sobic009G151200 Sobic006G248500--Sobic009G151200 Sobic008G058800 Sobic008G058800 Sobic006G248500--Sobic008G058800 Sobic004G013600 Sobic004G013600 Sobic006G248500--Sobic004G013600 Sobic007G026000 Sobic007G026000 Sobic006G248500--Sobic007G026000 Sobic004G347100 Sobic004G347100 Sobic006G248500--Sobic004G347100 Sobic009G044900 Sobic009G044900 Sobic006G248500--Sobic009G044900 Sobic008G173100 Sobic008G173100 Sobic001G246500--Sobic008G173100 Sobic010G096000 Sobic010G096000 Sobic001G246500--Sobic010G096000 Sobic009G074700 Sobic009G074700 Sobic001G246500--Sobic009G074700 Sobic001G246500--Sobic002G259800 Sobic001G246500--Sobic001G306900 Sobic001G246500--Sobic009G195200 Sobic004G086200 Sobic004G086200 Sobic001G246500--Sobic004G086200 Sobic001G246500--Sobic006G013500 Sobic001G246500--Sobic009G151200 Sobic008G083000 Sobic008G083000 Sobic005G084100--Sobic008G083000 Sobic005G084100--Sobic002G259800 Sobic001G360900 Sobic001G360900 Sobic005G084100--Sobic001G360900 Sobic010G279700 Sobic010G279700 Sobic005G084100--Sobic010G279700 Sobic002G076000 Sobic002G076000 Sobic005G084100--Sobic002G076000 Sobic005G084100--Sobic001G094000 Sobic002G090800 Sobic002G090800 Sobic005G084100--Sobic002G090800 Sobic008G131000 Sobic008G131000 Sobic005G084100--Sobic008G131000 Sobic006G056000 Sobic006G056000 Sobic005G084100--Sobic006G056000 Sobic002G423200--Sobic002G259800 Sobic005G133500 Sobic005G133500 Sobic002G423200--Sobic005G133500 Sobic004G246100 Sobic004G246100 Sobic002G423200--Sobic004G246100 Sobic002G423200--Sobic006G248500 Sobic008G127400 Sobic008G127400 Sobic002G423200--Sobic008G127400 Sobic010G236400 Sobic010G236400 Sobic002G423200--Sobic010G236400 Sobic003G353600 Sobic003G353600 Sobic002G423200--Sobic003G353600 Sobic001G138400 Sobic001G138400 Sobic002G423200--Sobic001G138400 Sobic006G138000 Sobic006G138000 Sobic002G423200--Sobic006G138000 Sobic008G100100 Sobic008G100100 Sobic004G156500--Sobic008G100100 Sobic004G156500--Sobic010G065300 Sobic001G134300 Sobic001G134300 Sobic004G156500--Sobic001G134300 Sobic004G156500--Sobic001G306900 Sobic006G118700 Sobic006G118700 Sobic004G156500--Sobic006G118700 Sobic006G210000 Sobic006G210000 Sobic004G156500--Sobic006G210000 Sobic003G416700 Sobic003G416700 Sobic004G156500--Sobic003G416700 Sobic002G357100 Sobic002G357100 Sobic004G156500--Sobic002G357100 Sobic004G156500--Sobic002G259800
Octagon: transcription factors


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