Gene annotation
Transcriptome id Sobic.003G433500.1
Synonym Sb03g046480, serine/arginine-rich (SR) family, SR45, sb-SR45, RNPS1
Functional annotation Putative splicing factor (PubMedID : 24356560)
serine/arginine repetitive matrix protein 1, putative, expressed
UniProt M1HJ56 , M1H597 , M1H594 , M1HAK5 , M1HJ50 , C5XIK9 , M1GSC4
Pfam PF00076
Panther DB PTHR15481
NCBI CDD KOG4207; Predicted splicing factor, SR protein superfamily
KEGG Orthology K14325; RNA-binding protein with serine-rich domain 1
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G16610 : arginine/serine-rich 45
RAP-DB (Rice) LOC_Os01g72890.1 : transposon protein, putative, CACTA, En/Spm sub-class, expressed
MaizeGDB (Corn) Zm00025a039081 , Zm00025a025910
Brachypodium PNT60883 , KQK11643 , KQK11644 , KQK11597
Barley HORVU3Hr1G110470.20 , HORVU3Hr1G110470.8 , HORVU3Hr1G110470.9 , HORVU3Hr1G110470.6 , HORVU3Hr1G110470.7 , HORVU3Hr1G110470.4 , HORVU3Hr1G110470.5 , HORVU3Hr1G110470.2 , HORVU3Hr1G110470.3 , HORVU3Hr1G110470.1 , HORVU3Hr1G110470.14 , HORVU3Hr1G110470.15 , HORVU3Hr1G110470.16 , HORVU3Hr1G110470.17 , HORVU3Hr1G110470.10 , HORVU3Hr1G110470.11 , HORVU3Hr1G110470.12 , HORVU3Hr1G110470.13 , HORVU3Hr1G110470.18 , HORVU3Hr1G110470.19
Wheat TraesCS3D02G507900 , TraesCS3D02G507900 , TraesCS3D02G507900 , TraesCS3D02G507900 , TraesCS3A02G500500 , TraesCS3B02G564200 , TraesCS3B02G564200 , TraesCS3B02G564200 , TraesCS3A02G500500 , TraesCS3B02G564200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G433500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G195200 ESP1, putative, expressed -
2 Sobic.003G355000 Transcription initiation factor TFIID subunit A containing protein, expressed K03126: transcription initiation factor TFIID subunit 12
3 Sobic.002G045400 MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
4 Sobic.009G216000 mov34 family protein, putative, expressed K11864: BRCC3, BRCA1/BRCA2-containing complex subunit 3
5 Sobic.003G354100 expressed protein -
6 Sobic.006G267300 expressed protein -
7 Sobic.006G248500 expressed protein -
8 Sobic.002G362300 prefoldin, putative, expressed -
9 Sobic.002G259800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
10 Sobic.001G469800 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
11 Sobic.010G202600 zinc finger, C3HC4 type domain containing protein, expressed K10661: MARCH6, E3 ubiquitin-protein ligase MARCH6
12 Sobic.007G117100 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
13 Sobic.002G177400 expressed protein -
14 Sobic.002G089900 OsFBX237 - F-box domain containing protein, expressed -
15 Sobic.002G018600 OsFBX234 - F-box domain containing protein, expressed -
16 Sobic.002G095700 C2-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C2 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
17 Sobic.009G044900 serine/threonine-protein phosphatase 2A regulatory subunit B subunitgamma, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
18 Sobic.008G073000 expressed protein -
19 Sobic.001G226000 WD domain, G-beta repeat domain containing protein, expressed K10599: PRPF19, pre-mRNA-processing factor 19
20 Sobic.004G078100 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -


Gene co-expression network
sample Sobic003G433500 Sobic003G433500 Sobic009G195200 Sobic009G195200 Sobic003G433500--Sobic009G195200 Sobic003G355000 Sobic003G355000 Sobic003G433500--Sobic003G355000 Sobic002G045400 Sobic002G045400 Sobic003G433500--Sobic002G045400 Sobic009G216000 Sobic009G216000 Sobic003G433500--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic003G433500--Sobic003G354100 Sobic006G267300 Sobic006G267300 Sobic003G433500--Sobic006G267300 Sobic006G248500 Sobic006G248500 Sobic003G433500--Sobic006G248500 Sobic002G362300 Sobic002G362300 Sobic003G433500--Sobic002G362300 Sobic002G259800 Sobic002G259800 Sobic003G433500--Sobic002G259800 Sobic009G195200--Sobic002G259800 Sobic009G195200--Sobic003G433500 Sobic009G195200--Sobic006G267300 Sobic002G264200 Sobic002G264200 Sobic009G195200--Sobic002G264200 Sobic001G246500 Sobic001G246500 Sobic009G195200--Sobic001G246500 Sobic009G195200--Sobic003G355000 Sobic007G091600 Sobic007G091600 Sobic009G195200--Sobic007G091600 Sobic001G306900 Sobic001G306900 Sobic009G195200--Sobic001G306900 Sobic001G226000 Sobic001G226000 Sobic009G195200--Sobic001G226000 Sobic009G198100 Sobic009G198100 Sobic003G355000--Sobic009G198100 Sobic002G034600 Sobic002G034600 Sobic003G355000--Sobic002G034600 Sobic003G355000--Sobic002G045400 Sobic003G355000--Sobic003G433500 Sobic008G174300 Sobic008G174300 Sobic003G355000--Sobic008G174300 Sobic001G517500 Sobic001G517500 Sobic003G355000--Sobic001G517500 Sobic007G118200 Sobic007G118200 Sobic003G355000--Sobic007G118200 Sobic010G033400 Sobic010G033400 Sobic003G355000--Sobic010G033400 Sobic001G497900 Sobic001G497900 Sobic003G355000--Sobic001G497900 Sobic008G073000 Sobic008G073000 Sobic002G045400--Sobic008G073000 Sobic002G045400--Sobic003G355000 Sobic002G045400--Sobic003G433500 Sobic002G045400--Sobic008G174300 Sobic008G101800 Sobic008G101800 Sobic002G045400--Sobic008G101800 Sobic002G045400--Sobic009G198100 Sobic002G045400--Sobic009G216000 Sobic010G202600 Sobic010G202600 Sobic002G045400--Sobic010G202600 Sobic005G030300 Sobic005G030300 Sobic002G045400--Sobic005G030300 Sobic009G216000--Sobic003G433500 Sobic009G216000--Sobic003G355000 Sobic009G216000--Sobic002G045400 Sobic009G216000--Sobic005G030300 Sobic001G371000 Sobic001G371000 Sobic009G216000--Sobic001G371000 Sobic004G013600 Sobic004G013600 Sobic009G216000--Sobic004G013600 Sobic009G216000--Sobic009G198100 Sobic009G216000--Sobic002G362300 Sobic006G261100 Sobic006G261100 Sobic009G216000--Sobic006G261100 Sobic003G354100--Sobic003G433500 Sobic003G354100--Sobic004G013600 Sobic003G132700 Sobic003G132700 Sobic003G354100--Sobic003G132700 Sobic007G117100 Sobic007G117100 Sobic003G354100--Sobic007G117100 Sobic007G188900 Sobic007G188900 Sobic003G354100--Sobic007G188900 Sobic007G139400 Sobic007G139400 Sobic003G354100--Sobic007G139400 Sobic006G092800 Sobic006G092800 Sobic003G354100--Sobic006G092800 Sobic003G354100--Sobic006G248500 Sobic009G129600 Sobic009G129600 Sobic003G354100--Sobic009G129600 Sobic007G111100 Sobic007G111100 Sobic006G267300--Sobic007G111100 Sobic009G257800 Sobic009G257800 Sobic006G267300--Sobic009G257800 Sobic003G205501 Sobic003G205501 Sobic006G267300--Sobic003G205501 Sobic001G408700 Sobic001G408700 Sobic006G267300--Sobic001G408700 Sobic006G267300--Sobic009G195200 Sobic006G267300--Sobic007G118200 Sobic006G267300--Sobic010G202600 Sobic006G267300--Sobic003G433500 Sobic008G127400 Sobic008G127400 Sobic006G267300--Sobic008G127400 Sobic001G469800 Sobic001G469800 Sobic006G248500--Sobic001G469800 Sobic006G248500--Sobic002G259800 Sobic006G248500--Sobic003G433500 Sobic009G151200 Sobic009G151200 Sobic006G248500--Sobic009G151200 Sobic008G058800 Sobic008G058800 Sobic006G248500--Sobic008G058800 Sobic006G248500--Sobic004G013600 Sobic007G026000 Sobic007G026000 Sobic006G248500--Sobic007G026000 Sobic004G347100 Sobic004G347100 Sobic006G248500--Sobic004G347100 Sobic009G044900 Sobic009G044900 Sobic006G248500--Sobic009G044900 Sobic005G009200 Sobic005G009200 Sobic002G362300--Sobic005G009200 Sobic002G362300--Sobic001G371000 Sobic002G362300--Sobic003G433500 Sobic005G229000 Sobic005G229000 Sobic002G362300--Sobic005G229000 Sobic002G362300--Sobic008G073000 Sobic009G030300 Sobic009G030300 Sobic002G362300--Sobic009G030300 Sobic002G095700 Sobic002G095700 Sobic002G362300--Sobic002G095700 Sobic002G362300--Sobic005G030300 Sobic002G362300--Sobic009G044900 Sobic002G259800--Sobic009G195200 Sobic002G259800--Sobic001G306900 Sobic005G015900 Sobic005G015900 Sobic002G259800--Sobic005G015900 Sobic003G394300 Sobic003G394300 Sobic002G259800--Sobic003G394300 Sobic002G259800--Sobic006G248500 Sobic002G259800--Sobic001G246500 Sobic005G084100 Sobic005G084100 Sobic002G259800--Sobic005G084100 Sobic002G423200 Sobic002G423200 Sobic002G259800--Sobic002G423200 Sobic004G156500 Sobic004G156500 Sobic002G259800--Sobic004G156500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.