Gene annotation
Transcriptome id Sobic.003G355000.4,Sobic.003G355000.3,Sobic.003G355000.2,Sobic.003G355000.1
Synonym EER4, TAF12B, Sb03g039720
Functional annotation Transcription initiation factor TFIID subunit A containing protein, expressed
UniProt A0A1W0W0H1 , C5XPR9
Pfam PF03847
Panther DB PTHR12264 PTHR12264:SF3
NCBI CDD -
KEGG Orthology K03126; transcription initiation factor TFIID subunit 12
Gene Ontology GO:0006352; DNA-templated transcription, initiation GO:0005669transcription factor TFIID complex


Orthologs (automatic annotation)
TAIR AT1G17440 : Transcription initiation factor TFIID subunit A
RAP-DB (Rice) LOC_Os01g62820.1,LOC_Os01g62820.3,LOC_Os01g62820.2 : Transcription initiation factor TFIID subunit A containing protein, expressed
MaizeGDB (Corn) Zm00025a039661 , Zm00025a026867
Brachypodium KQK10556 , KQK10557 , KQK10558 , KQK10559 , KQK10562 , KQK10561 , KQK10560
Barley HORVU3Hr1G085840.2 , HORVU3Hr1G085840.3 , HORVU3Hr1G085840.1 , HORVU3Hr1G085840.6 , HORVU3Hr1G085840.7 , HORVU3Hr1G085840.4 , HORVU3Hr1G085840.5 , HORVU3Hr1G085840.8 , HORVU3Hr1G085840.9 , HORVU3Hr1G085840.10 , HORVU3Hr1G085840.12 , HORVU3Hr1G085840.13 , HORVU3Hr1G085840.11
Wheat TraesCS3A02G362900 , TraesCS3A02G362900 , TraesCS3D02G356600 , TraesCS3D02G356600 , TraesCS3D02G356600 , TraesCS3D02G356600 , TraesCS3A02G362900
Populus -


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cDNA sequences
Sobic.003G355000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G198100 expressed protein -
2 Sobic.002G034600 zinc ion binding protein, putative, expressed -
3 Sobic.002G045400 MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
4 Sobic.003G433500 Putative splicing factor(PubMedID : 24356560)@serine/arginine repetitive matrix protein 1, putative, expressed K14325: RNA-binding protein with serine-rich domain 1
5 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
6 Sobic.001G517500 Ubiquitin family domain containing protein, expressed K04523: UBQLN, ubiquilin
7 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
8 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
9 Sobic.001G497900 XS domain containing protein, expressed -
10 Sobic.001G206100 expressed protein -
11 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
12 Sobic.009G216000 mov34 family protein, putative, expressed K11864: BRCC3, BRCA1/BRCA2-containing complex subunit 3
13 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
14 Sobic.006G267300 expressed protein -
15 Sobic.009G195200 ESP1, putative, expressed -
16 Sobic.010G202600 zinc finger, C3HC4 type domain containing protein, expressed K10661: MARCH6, E3 ubiquitin-protein ligase MARCH6
17 Sobic.007G046200 ELF7, putative, expressed K15174: RNA polymerase II-associated factor 1
18 Sobic.001G131800 expressed protein K15186: ELL-associated factor
19 Sobic.004G349900 -(PubMedID : 27329702)@expressed protein -
20 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16


Gene co-expression network
sample Sobic003G355000 Sobic003G355000 Sobic009G198100 Sobic009G198100 Sobic003G355000--Sobic009G198100 Sobic002G034600 Sobic002G034600 Sobic003G355000--Sobic002G034600 Sobic002G045400 Sobic002G045400 Sobic003G355000--Sobic002G045400 Sobic003G433500 Sobic003G433500 Sobic003G355000--Sobic003G433500 Sobic008G174300 Sobic008G174300 Sobic003G355000--Sobic008G174300 Sobic001G517500 Sobic001G517500 Sobic003G355000--Sobic001G517500 Sobic007G118200 Sobic007G118200 Sobic003G355000--Sobic007G118200 Sobic010G033400 Sobic010G033400 Sobic003G355000--Sobic010G033400 Sobic001G497900 Sobic001G497900 Sobic003G355000--Sobic001G497900 Sobic009G198100--Sobic007G118200 Sobic009G198100--Sobic002G034600 Sobic009G198100--Sobic010G033400 Sobic009G198100--Sobic003G355000 Sobic003G081000 Sobic003G081000 Sobic009G198100--Sobic003G081000 Sobic009G198100--Sobic008G174300 Sobic001G131800 Sobic001G131800 Sobic009G198100--Sobic001G131800 Sobic003G359300 Sobic003G359300 Sobic009G198100--Sobic003G359300 Sobic007G205000 Sobic007G205000 Sobic009G198100--Sobic007G205000 Sobic002G034600--Sobic009G198100 Sobic007G119200 Sobic007G119200 Sobic002G034600--Sobic007G119200 Sobic002G034600--Sobic003G081000 Sobic001G473600 Sobic001G473600 Sobic002G034600--Sobic001G473600 Sobic002G034600--Sobic003G355000 Sobic002G034600--Sobic007G118200 Sobic002G264200 Sobic002G264200 Sobic002G034600--Sobic002G264200 Sobic001G356600 Sobic001G356600 Sobic002G034600--Sobic001G356600 Sobic010G236400 Sobic010G236400 Sobic002G034600--Sobic010G236400 Sobic008G073000 Sobic008G073000 Sobic002G045400--Sobic008G073000 Sobic002G045400--Sobic003G355000 Sobic002G045400--Sobic003G433500 Sobic002G045400--Sobic008G174300 Sobic008G101800 Sobic008G101800 Sobic002G045400--Sobic008G101800 Sobic002G045400--Sobic009G198100 Sobic009G216000 Sobic009G216000 Sobic002G045400--Sobic009G216000 Sobic010G202600 Sobic010G202600 Sobic002G045400--Sobic010G202600 Sobic005G030300 Sobic005G030300 Sobic002G045400--Sobic005G030300 Sobic009G195200 Sobic009G195200 Sobic003G433500--Sobic009G195200 Sobic003G433500--Sobic003G355000 Sobic003G433500--Sobic002G045400 Sobic003G433500--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic003G433500--Sobic003G354100 Sobic006G267300 Sobic006G267300 Sobic003G433500--Sobic006G267300 Sobic006G248500 Sobic006G248500 Sobic003G433500--Sobic006G248500 Sobic002G362300 Sobic002G362300 Sobic003G433500--Sobic002G362300 Sobic002G259800 Sobic002G259800 Sobic003G433500--Sobic002G259800 Sobic008G174300--Sobic001G131800 Sobic010G260500 Sobic010G260500 Sobic008G174300--Sobic010G260500 Sobic008G174300--Sobic010G033400 Sobic008G174300--Sobic003G081000 Sobic008G174300--Sobic007G118200 Sobic004G263900 Sobic004G263900 Sobic008G174300--Sobic004G263900 Sobic008G174300--Sobic009G198100 Sobic008G174300--Sobic003G355000 Sobic008G174300--Sobic003G359300 Sobic001G517500--Sobic003G355000 Sobic001G517500--Sobic007G119200 Sobic007G046200 Sobic007G046200 Sobic001G517500--Sobic007G046200 Sobic003G397800 Sobic003G397800 Sobic001G517500--Sobic003G397800 Sobic003G073000 Sobic003G073000 Sobic001G517500--Sobic003G073000 Sobic001G517500--Sobic002G034600 Sobic002G353600 Sobic002G353600 Sobic001G517500--Sobic002G353600 Sobic004G146500 Sobic004G146500 Sobic001G517500--Sobic004G146500 Sobic001G408700 Sobic001G408700 Sobic001G517500--Sobic001G408700 Sobic007G118200--Sobic010G033400 Sobic007G118200--Sobic003G081000 Sobic004G350100 Sobic004G350100 Sobic007G118200--Sobic004G350100 Sobic007G118200--Sobic009G198100 Sobic007G118200--Sobic008G174300 Sobic007G118200--Sobic002G034600 Sobic006G252700 Sobic006G252700 Sobic007G118200--Sobic006G252700 Sobic001G028400 Sobic001G028400 Sobic007G118200--Sobic001G028400 Sobic007G118200--Sobic001G408700 Sobic010G033400--Sobic007G118200 Sobic010G033400--Sobic008G174300 Sobic010G033400--Sobic009G198100 Sobic010G033400--Sobic004G350100 Sobic010G033400--Sobic001G028400 Sobic010G033400--Sobic010G260500 Sobic010G033400--Sobic003G359300 Sobic010G033400--Sobic003G081000 Sobic010G033400--Sobic001G131800 Sobic001G497900--Sobic002G034600 Sobic001G497900--Sobic003G355000 Sobic001G497900--Sobic009G198100 Sobic001G497900--Sobic001G473600 Sobic006G121300 Sobic006G121300 Sobic001G497900--Sobic006G121300 Sobic007G091600 Sobic007G091600 Sobic001G497900--Sobic007G091600 Sobic001G497900--Sobic001G356600 Sobic010G095700 Sobic010G095700 Sobic001G497900--Sobic010G095700 Sobic001G395100 Sobic001G395100 Sobic001G497900--Sobic001G395100
Octagon: transcription factors


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