Gene annotation
Transcriptome id Sobic.004G349900.1
Synonym Sb04g037660
Functional annotation - (PubMedID : 27329702)
expressed protein
UniProt C5XW08
Pfam -
Panther DB PTHR31798 PTHR31798:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G52430 : hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) LOC_Os02g57610.1 : expressed protein
MaizeGDB (Corn) Zm00025a032762
Brachypodium -
Barley HORVU6Hr1G092440.2 , HORVU6Hr1G092440.1
Wheat TraesCS6B02G444000 , TraesCS6A02G401900 , TraesCS6D02G385700
Populus -


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cDNA sequences
Sobic.004G349900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G137900 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
2 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
3 Sobic.006G128800 expressed protein -
4 Sobic.001G206100 expressed protein -
5 Sobic.003G220200 protein kinase family protein, putative, expressed K17541: SCY1-like protein 2
6 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
7 Sobic.003G261300 arginine/serine-rich coiled-coil protein 1, putative, expressed -
8 Sobic.008G116500 plus-3 domain containing protein, expressed K15178: RNA polymerase-associated protein RTF1
9 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
10 Sobic.004G057400 copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
11 Sobic.002G001600 MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
12 Sobic.002G320500 MYB family transcription factor, putative, expressed -
13 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
14 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
15 Sobic.002G248400 ENT domain containing protein, expressed -
16 Sobic.001G514000 OsFBL10 - F-box domain and LRR containing protein, expressed -
17 Sobic.003G073000 IWS1 C-terminus family protein, putative, expressed K17498: SPN1, transcription factor SPN1
18 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
19 Sobic.004G196700 expressed protein -
20 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23


Gene co-expression network
sample Sobic004G349900 Sobic004G349900 Sobic007G137900 Sobic007G137900 Sobic004G349900--Sobic007G137900 Sobic002G157300 Sobic002G157300 Sobic004G349900--Sobic002G157300 Sobic006G128800 Sobic006G128800 Sobic004G349900--Sobic006G128800 Sobic001G206100 Sobic001G206100 Sobic004G349900--Sobic001G206100 Sobic003G220200 Sobic003G220200 Sobic004G349900--Sobic003G220200 Sobic007G011400 Sobic007G011400 Sobic004G349900--Sobic007G011400 Sobic003G261300 Sobic003G261300 Sobic004G349900--Sobic003G261300 Sobic008G116500 Sobic008G116500 Sobic004G349900--Sobic008G116500 Sobic007G185900 Sobic007G185900 Sobic004G349900--Sobic007G185900 Sobic001G251700 Sobic001G251700 Sobic007G137900--Sobic001G251700 Sobic007G137900--Sobic002G157300 Sobic004G196700 Sobic004G196700 Sobic007G137900--Sobic004G196700 Sobic003G200200 Sobic003G200200 Sobic007G137900--Sobic003G200200 Sobic003G170100 Sobic003G170100 Sobic007G137900--Sobic003G170100 Sobic007G137900--Sobic004G349900 Sobic005G149500 Sobic005G149500 Sobic007G137900--Sobic005G149500 Sobic007G137900--Sobic007G011400 Sobic002G157000 Sobic002G157000 Sobic007G137900--Sobic002G157000 Sobic010G026400 Sobic010G026400 Sobic002G157300--Sobic010G026400 Sobic003G187400 Sobic003G187400 Sobic002G157300--Sobic003G187400 Sobic002G157300--Sobic007G011400 Sobic002G157300--Sobic005G149500 Sobic001G094000 Sobic001G094000 Sobic002G157300--Sobic001G094000 Sobic010G260500 Sobic010G260500 Sobic002G157300--Sobic010G260500 Sobic002G157300--Sobic007G185900 Sobic010G263800 Sobic010G263800 Sobic002G157300--Sobic010G263800 Sobic006G173100 Sobic006G173100 Sobic002G157300--Sobic006G173100 Sobic003G205501 Sobic003G205501 Sobic006G128800--Sobic003G205501 Sobic010G174800 Sobic010G174800 Sobic006G128800--Sobic010G174800 Sobic006G128800--Sobic004G349900 Sobic006G128800--Sobic002G157300 Sobic006G128800--Sobic003G261300 Sobic003G248500 Sobic003G248500 Sobic006G128800--Sobic003G248500 Sobic006G130200 Sobic006G130200 Sobic006G128800--Sobic006G130200 Sobic001G514000 Sobic001G514000 Sobic006G128800--Sobic001G514000 Sobic003G008500 Sobic003G008500 Sobic006G128800--Sobic003G008500 Sobic001G257300 Sobic001G257300 Sobic001G206100--Sobic001G257300 Sobic006G013500 Sobic006G013500 Sobic001G206100--Sobic006G013500 Sobic002G320500 Sobic002G320500 Sobic001G206100--Sobic002G320500 Sobic006G080300 Sobic006G080300 Sobic001G206100--Sobic006G080300 Sobic001G206100--Sobic002G157000 Sobic009G000500 Sobic009G000500 Sobic001G206100--Sobic009G000500 Sobic004G213000 Sobic004G213000 Sobic001G206100--Sobic004G213000 Sobic001G356500 Sobic001G356500 Sobic001G206100--Sobic001G356500 Sobic002G161000 Sobic002G161000 Sobic001G206100--Sobic002G161000 Sobic007G145200 Sobic007G145200 Sobic003G220200--Sobic007G145200 Sobic003G220200--Sobic002G157300 Sobic003G220200--Sobic002G157000 Sobic003G220200--Sobic002G320500 Sobic003G220200--Sobic007G137900 Sobic003G220200--Sobic001G251700 Sobic003G220200--Sobic007G011400 Sobic003G220200--Sobic004G349900 Sobic001G107500 Sobic001G107500 Sobic003G220200--Sobic001G107500 Sobic007G011400--Sobic001G094000 Sobic007G205800 Sobic007G205800 Sobic007G011400--Sobic007G205800 Sobic007G011400--Sobic002G157300 Sobic007G011400--Sobic010G263800 Sobic002G313300 Sobic002G313300 Sobic007G011400--Sobic002G313300 Sobic009G040700 Sobic009G040700 Sobic007G011400--Sobic009G040700 Sobic007G011400--Sobic002G157000 Sobic001G162300 Sobic001G162300 Sobic007G011400--Sobic001G162300 Sobic008G034600 Sobic008G034600 Sobic007G011400--Sobic008G034600 Sobic003G261300--Sobic010G026400 Sobic003G261300--Sobic002G157300 Sobic002G365100 Sobic002G365100 Sobic003G261300--Sobic002G365100 Sobic003G261300--Sobic006G128800 Sobic003G261300--Sobic003G220200 Sobic003G012500 Sobic003G012500 Sobic003G261300--Sobic003G012500 Sobic003G261300--Sobic007G205800 Sobic003G261300--Sobic004G349900 Sobic006G088100 Sobic006G088100 Sobic003G261300--Sobic006G088100 Sobic002G001600 Sobic002G001600 Sobic008G116500--Sobic002G001600 Sobic001G543900 Sobic001G543900 Sobic008G116500--Sobic001G543900 Sobic008G116500--Sobic007G011400 Sobic001G439500 Sobic001G439500 Sobic008G116500--Sobic001G439500 Sobic008G116500--Sobic006G080300 Sobic007G037100 Sobic007G037100 Sobic008G116500--Sobic007G037100 Sobic008G116500--Sobic002G313300 Sobic001G477800 Sobic001G477800 Sobic008G116500--Sobic001G477800 Sobic008G116500--Sobic004G196700 Sobic007G185900--Sobic004G196700 Sobic007G185900--Sobic002G157300 Sobic007G078000 Sobic007G078000 Sobic007G185900--Sobic007G078000 Sobic007G185900--Sobic010G260500 Sobic007G185900--Sobic002G313300 Sobic008G054500 Sobic008G054500 Sobic007G185900--Sobic008G054500 Sobic003G397800 Sobic003G397800 Sobic007G185900--Sobic003G397800 Sobic007G185900--Sobic005G149500 Sobic007G185900--Sobic003G187400
Octagon: transcription factors


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