Gene annotation
Transcriptome id Sobic.008G116500.1
Synonym Sb08g017010, VIP5
Functional annotation plus-3 domain containing protein, expressed
UniProt C5YPC0
Pfam PF03126
Panther DB PTHR13115 PTHR13115:SF8
NCBI CDD KOG2402; Paf1/RNA polymerase II complex, RTF1 component (involved in regulation of TATA box-binding protein)
KEGG Orthology K15178; RNA polymerase-associated protein RTF1
Gene Ontology GO:0003677; DNA binding GO:0016593Cdc73/Paf1 complex GO:0016570histone modification GO:0006368transcription elongation from RNA polymerase II promoter


Orthologs (automatic annotation)
TAIR AT1G61040 : plus-3 domain-containing protein
RAP-DB (Rice) LOC_Os12g35030.1 : plus-3 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a025544 , Zm00025a054366
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.008G116500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G001600 MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
2 Sobic.001G543900 H(+)-ATPase 7(PubMedID : 26320239)@E1-E2 ATPase domain containing protein, expressed K01535: PMA1, H+-transporting ATPase
3 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
4 Sobic.001G439500 acyl CoA binding protein, putative, expressed -
5 Sobic.006G080300 SET domain containing protein, expressed -
6 Sobic.007G037100 MYB family transcription factor, putative, expressed -
7 Sobic.002G313300 bromodomain domain containing protein, expressed -
8 Sobic.001G477800 expressed protein -
9 Sobic.004G196700 expressed protein -
10 Sobic.004G349900 -(PubMedID : 27329702)@expressed protein -
11 Sobic.001G024200 lipase class 3 family protein, putative, expressed -
12 Sobic.005G162600 zinc knuckle domain containing protein, expressed -
13 Sobic.003G204000 expressed protein -
14 Sobic.007G211000 helix-loop-helix DNA-binding domain containing protein, expressed -
15 Sobic.002G166700 cyclin, putative, expressed -
16 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
17 Sobic.007G137900 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
18 Sobic.008G101800 expressed protein -
19 Sobic.002G061400 OsFBX237 - F-box domain containing protein, expressed -
20 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1


Gene co-expression network
sample Sobic008G116500 Sobic008G116500 Sobic002G001600 Sobic002G001600 Sobic008G116500--Sobic002G001600 Sobic001G543900 Sobic001G543900 Sobic008G116500--Sobic001G543900 Sobic007G011400 Sobic007G011400 Sobic008G116500--Sobic007G011400 Sobic001G439500 Sobic001G439500 Sobic008G116500--Sobic001G439500 Sobic006G080300 Sobic006G080300 Sobic008G116500--Sobic006G080300 Sobic007G037100 Sobic007G037100 Sobic008G116500--Sobic007G037100 Sobic002G313300 Sobic002G313300 Sobic008G116500--Sobic002G313300 Sobic001G477800 Sobic001G477800 Sobic008G116500--Sobic001G477800 Sobic004G196700 Sobic004G196700 Sobic008G116500--Sobic004G196700 Sobic002G001600--Sobic008G116500 Sobic002G001600--Sobic001G543900 Sobic002G001600--Sobic002G313300 Sobic008G101800 Sobic008G101800 Sobic002G001600--Sobic008G101800 Sobic007G185900 Sobic007G185900 Sobic002G001600--Sobic007G185900 Sobic002G166700 Sobic002G166700 Sobic002G001600--Sobic002G166700 Sobic008G106000 Sobic008G106000 Sobic002G001600--Sobic008G106000 Sobic002G001600--Sobic007G037100 Sobic002G166600 Sobic002G166600 Sobic002G001600--Sobic002G166600 Sobic001G543900--Sobic001G477800 Sobic001G543900--Sobic002G313300 Sobic004G112500 Sobic004G112500 Sobic001G543900--Sobic004G112500 Sobic001G543900--Sobic002G001600 Sobic006G009400 Sobic006G009400 Sobic001G543900--Sobic006G009400 Sobic001G543900--Sobic002G166700 Sobic005G130200 Sobic005G130200 Sobic001G543900--Sobic005G130200 Sobic001G272000 Sobic001G272000 Sobic001G543900--Sobic001G272000 Sobic010G248200 Sobic010G248200 Sobic001G543900--Sobic010G248200 Sobic001G094000 Sobic001G094000 Sobic007G011400--Sobic001G094000 Sobic007G205800 Sobic007G205800 Sobic007G011400--Sobic007G205800 Sobic002G157300 Sobic002G157300 Sobic007G011400--Sobic002G157300 Sobic010G263800 Sobic010G263800 Sobic007G011400--Sobic010G263800 Sobic007G011400--Sobic002G313300 Sobic009G040700 Sobic009G040700 Sobic007G011400--Sobic009G040700 Sobic002G157000 Sobic002G157000 Sobic007G011400--Sobic002G157000 Sobic001G162300 Sobic001G162300 Sobic007G011400--Sobic001G162300 Sobic008G034600 Sobic008G034600 Sobic007G011400--Sobic008G034600 Sobic001G024200 Sobic001G024200 Sobic001G439500--Sobic001G024200 Sobic004G143700 Sobic004G143700 Sobic001G439500--Sobic004G143700 Sobic007G211000 Sobic007G211000 Sobic001G439500--Sobic007G211000 Sobic001G439500--Sobic008G116500 Sobic001G439500--Sobic004G112500 Sobic001G451000 Sobic001G451000 Sobic001G439500--Sobic001G451000 Sobic001G439500--Sobic001G543900 Sobic001G439500--Sobic002G001600 Sobic002G283300 Sobic002G283300 Sobic001G439500--Sobic002G283300 Sobic003G268300 Sobic003G268300 Sobic006G080300--Sobic003G268300 Sobic004G031700 Sobic004G031700 Sobic006G080300--Sobic004G031700 Sobic006G080300--Sobic001G094000 Sobic006G080300--Sobic001G477800 Sobic006G080300--Sobic002G313300 Sobic001G206100 Sobic001G206100 Sobic006G080300--Sobic001G206100 Sobic006G080300--Sobic002G157000 Sobic003G170100 Sobic003G170100 Sobic006G080300--Sobic003G170100 Sobic001G257300 Sobic001G257300 Sobic006G080300--Sobic001G257300 Sobic006G082600 Sobic006G082600 Sobic007G037100--Sobic006G082600 Sobic001G222300 Sobic001G222300 Sobic007G037100--Sobic001G222300 Sobic007G037100--Sobic008G116500 Sobic007G037100--Sobic002G001600 Sobic010G124001 Sobic010G124001 Sobic007G037100--Sobic010G124001 Sobic007G037100--Sobic007G211000 Sobic007G078000 Sobic007G078000 Sobic007G037100--Sobic007G078000 Sobic007G037100--Sobic001G162300 Sobic007G037100--Sobic002G283300 Sobic002G313300--Sobic001G477800 Sobic002G077200 Sobic002G077200 Sobic002G313300--Sobic002G077200 Sobic002G313300--Sobic007G011400 Sobic002G313300--Sobic010G263800 Sobic002G313300--Sobic001G543900 Sobic002G313300--Sobic006G080300 Sobic002G313300--Sobic006G009400 Sobic002G313300--Sobic007G185900 Sobic002G313300--Sobic004G031700 Sobic001G477800--Sobic002G313300 Sobic001G477800--Sobic004G031700 Sobic001G477800--Sobic001G094000 Sobic001G544200 Sobic001G544200 Sobic001G477800--Sobic001G544200 Sobic001G477800--Sobic001G543900 Sobic001G477800--Sobic006G080300 Sobic001G477800--Sobic009G040700 Sobic001G477800--Sobic007G011400 Sobic001G477800--Sobic006G009400 Sobic004G196700--Sobic007G185900 Sobic004G196700--Sobic007G078000 Sobic005G149500 Sobic005G149500 Sobic004G196700--Sobic005G149500 Sobic007G137900 Sobic007G137900 Sobic004G196700--Sobic007G137900 Sobic004G196700--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic004G196700--Sobic003G187400 Sobic004G196700--Sobic001G477800 Sobic004G196700--Sobic006G082600 Sobic004G196700--Sobic009G040700
Octagon: transcription factors


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