Gene annotation
Transcriptome id Sobic.008G101800.1
Synonym Sb08g015420
Functional annotation expressed protein
UniProt C5YNV4
Pfam -
Panther DB PTHR31789 PTHR31789:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G54190 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os12g31440.1 : expressed protein
MaizeGDB (Corn) Zm00025a025616 , Zm00025a054231
Brachypodium KQJ86663
Barley HORVU5Hr1G035370.19 , HORVU5Hr1G035370.18 , HORVU5Hr1G035370.15 , HORVU5Hr1G035370.14 , HORVU5Hr1G035370.17 , HORVU5Hr1G035370.16 , HORVU5Hr1G035370.11 , HORVU5Hr1G035370.10 , HORVU5Hr1G035370.13 , HORVU5Hr1G035370.12 , HORVU5Hr1G035370.9 , HORVU5Hr1G035370.8 , HORVU5Hr1G035370.1 , HORVU5Hr1G035370.3 , HORVU5Hr1G035370.2 , HORVU5Hr1G035370.5 , HORVU5Hr1G035370.4 , HORVU5Hr1G035370.7 , HORVU5Hr1G035370.6 , HORVU5Hr1G035370.20 , HORVU5Hr1G035370.21 , HORVU5Hr1G035370.22 , HORVU5Hr1G035370.23 , HORVU5Hr1G035370.24
Wheat TraesCS5D02G116900 , TraesCS5D02G116900 , TraesCS5A02G107600 , TraesCS5A02G107600 , TraesCS5B02G109800 , TraesCS5B02G109800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G101800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G001600 MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
2 Sobic.008G073000 expressed protein -
3 Sobic.001G222300 cyclin-dependent kinase inhibitor, putative, expressed -
4 Sobic.001G206100 expressed protein -
5 Sobic.005G162600 zinc knuckle domain containing protein, expressed -
6 Sobic.008G116500 plus-3 domain containing protein, expressed K15178: RNA polymerase-associated protein RTF1
7 Sobic.004G332300 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
9 Sobic.002G045400 MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
10 Sobic.004G349900 -(PubMedID : 27329702)@expressed protein -
11 Sobic.007G037100 MYB family transcription factor, putative, expressed -
12 Sobic.008G129700 PAPA-1-like conserved region family protein, expressed K11666: INO80B, ZNHIT4, INO80 complex subunit B
13 Sobic.001G257300 OsFBL52 - F-box domain and LRR containing protein, expressed -
14 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
15 Sobic.003G073000 IWS1 C-terminus family protein, putative, expressed K17498: SPN1, transcription factor SPN1
16 Sobic.010G174800 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
17 Sobic.002G313300 bromodomain domain containing protein, expressed -
18 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
19 Sobic.001G056200 expressed protein -
20 Sobic.005G030300 protein kinase PKN/PRK1, effector, putative, expressed -


Gene co-expression network
sample Sobic008G101800 Sobic008G101800 Sobic002G001600 Sobic002G001600 Sobic008G101800--Sobic002G001600 Sobic008G073000 Sobic008G073000 Sobic008G101800--Sobic008G073000 Sobic001G222300 Sobic001G222300 Sobic008G101800--Sobic001G222300 Sobic001G206100 Sobic001G206100 Sobic008G101800--Sobic001G206100 Sobic005G162600 Sobic005G162600 Sobic008G101800--Sobic005G162600 Sobic008G116500 Sobic008G116500 Sobic008G101800--Sobic008G116500 Sobic004G332300 Sobic004G332300 Sobic008G101800--Sobic004G332300 Sobic007G185900 Sobic007G185900 Sobic008G101800--Sobic007G185900 Sobic002G045400 Sobic002G045400 Sobic008G101800--Sobic002G045400 Sobic002G001600--Sobic008G116500 Sobic001G543900 Sobic001G543900 Sobic002G001600--Sobic001G543900 Sobic002G313300 Sobic002G313300 Sobic002G001600--Sobic002G313300 Sobic002G001600--Sobic008G101800 Sobic002G001600--Sobic007G185900 Sobic002G166700 Sobic002G166700 Sobic002G001600--Sobic002G166700 Sobic008G106000 Sobic008G106000 Sobic002G001600--Sobic008G106000 Sobic007G037100 Sobic007G037100 Sobic002G001600--Sobic007G037100 Sobic002G166600 Sobic002G166600 Sobic002G001600--Sobic002G166600 Sobic005G030300 Sobic005G030300 Sobic008G073000--Sobic005G030300 Sobic008G073000--Sobic002G045400 Sobic002G095700 Sobic002G095700 Sobic008G073000--Sobic002G095700 Sobic008G073000--Sobic008G101800 Sobic001G202266 Sobic001G202266 Sobic008G073000--Sobic001G202266 Sobic006G278200 Sobic006G278200 Sobic008G073000--Sobic006G278200 Sobic008G165100 Sobic008G165100 Sobic008G073000--Sobic008G165100 Sobic010G174800 Sobic010G174800 Sobic008G073000--Sobic010G174800 Sobic002G067800 Sobic002G067800 Sobic008G073000--Sobic002G067800 Sobic001G222300--Sobic007G037100 Sobic001G222300--Sobic005G162600 Sobic001G222300--Sobic008G101800 Sobic007G211000 Sobic007G211000 Sobic001G222300--Sobic007G211000 Sobic004G188300 Sobic004G188300 Sobic001G222300--Sobic004G188300 Sobic001G222300--Sobic002G001600 Sobic001G451000 Sobic001G451000 Sobic001G222300--Sobic001G451000 Sobic001G222300--Sobic008G116500 Sobic002G284200 Sobic002G284200 Sobic001G222300--Sobic002G284200 Sobic001G257300 Sobic001G257300 Sobic001G206100--Sobic001G257300 Sobic006G013500 Sobic006G013500 Sobic001G206100--Sobic006G013500 Sobic002G320500 Sobic002G320500 Sobic001G206100--Sobic002G320500 Sobic006G080300 Sobic006G080300 Sobic001G206100--Sobic006G080300 Sobic002G157000 Sobic002G157000 Sobic001G206100--Sobic002G157000 Sobic009G000500 Sobic009G000500 Sobic001G206100--Sobic009G000500 Sobic004G213000 Sobic004G213000 Sobic001G206100--Sobic004G213000 Sobic001G356500 Sobic001G356500 Sobic001G206100--Sobic001G356500 Sobic002G161000 Sobic002G161000 Sobic001G206100--Sobic002G161000 Sobic005G162600--Sobic001G222300 Sobic005G162600--Sobic008G116500 Sobic005G162600--Sobic008G101800 Sobic001G439500 Sobic001G439500 Sobic005G162600--Sobic001G439500 Sobic003G093600 Sobic003G093600 Sobic005G162600--Sobic003G093600 Sobic007G008800 Sobic007G008800 Sobic005G162600--Sobic007G008800 Sobic006G129700 Sobic006G129700 Sobic005G162600--Sobic006G129700 Sobic005G162600--Sobic007G037100 Sobic003G204000 Sobic003G204000 Sobic005G162600--Sobic003G204000 Sobic008G116500--Sobic002G001600 Sobic008G116500--Sobic001G543900 Sobic007G011400 Sobic007G011400 Sobic008G116500--Sobic007G011400 Sobic008G116500--Sobic001G439500 Sobic008G116500--Sobic006G080300 Sobic008G116500--Sobic007G037100 Sobic008G116500--Sobic002G313300 Sobic001G477800 Sobic001G477800 Sobic008G116500--Sobic001G477800 Sobic004G196700 Sobic004G196700 Sobic008G116500--Sobic004G196700 Sobic004G332300--Sobic008G101800 Sobic003G355000 Sobic003G355000 Sobic004G332300--Sobic003G355000 Sobic004G332300--Sobic002G067800 Sobic003G073000 Sobic003G073000 Sobic004G332300--Sobic003G073000 Sobic004G332300--Sobic002G045400 Sobic004G332300--Sobic002G001600 Sobic004G332300--Sobic007G185900 Sobic010G194700 Sobic010G194700 Sobic004G332300--Sobic010G194700 Sobic004G332300--Sobic001G206100 Sobic007G185900--Sobic004G196700 Sobic002G157300 Sobic002G157300 Sobic007G185900--Sobic002G157300 Sobic007G078000 Sobic007G078000 Sobic007G185900--Sobic007G078000 Sobic010G260500 Sobic010G260500 Sobic007G185900--Sobic010G260500 Sobic007G185900--Sobic002G313300 Sobic008G054500 Sobic008G054500 Sobic007G185900--Sobic008G054500 Sobic003G397800 Sobic003G397800 Sobic007G185900--Sobic003G397800 Sobic005G149500 Sobic005G149500 Sobic007G185900--Sobic005G149500 Sobic003G187400 Sobic003G187400 Sobic007G185900--Sobic003G187400 Sobic002G045400--Sobic008G073000 Sobic002G045400--Sobic003G355000 Sobic003G433500 Sobic003G433500 Sobic002G045400--Sobic003G433500 Sobic008G174300 Sobic008G174300 Sobic002G045400--Sobic008G174300 Sobic002G045400--Sobic008G101800 Sobic009G198100 Sobic009G198100 Sobic002G045400--Sobic009G198100 Sobic009G216000 Sobic009G216000 Sobic002G045400--Sobic009G216000 Sobic010G202600 Sobic010G202600 Sobic002G045400--Sobic010G202600 Sobic002G045400--Sobic005G030300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.