Gene annotation
Transcriptome id Sobic.001G222300.1
Synonym KRP3, Sb01g019550, ICK6
Functional annotation cyclin-dependent kinase inhibitor, putative, expressed
UniProt C5WYI5
Pfam PF02234
Panther DB PTHR10265 PTHR10265:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0007050; cell cycle arrest GO:0005634nucleus GO:0004861cyclin-dependent protein serine/threonine kinase inhibitor activity


Orthologs (automatic annotation)
TAIR AT5G48820 : inhibitor/interactor with cyclin-dependent kinase
RAP-DB (Rice) LOC_Os03g04490.1 : cyclin-dependent kinase inhibitor, putative, expressed
MaizeGDB (Corn) Zm00025a017647 , Zm00025a006650
Brachypodium KQJ97051 , PNT67524 , KQJ97052
Barley -
Wheat TraesCS1B02G168900 , TraesCS1A02G151400 , TraesCS1A02G151400 , TraesCS1D02G148400 , TraesCS1D02G148400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G037100 MYB family transcription factor, putative, expressed -
2 Sobic.005G162600 zinc knuckle domain containing protein, expressed -
3 Sobic.008G101800 expressed protein -
4 Sobic.007G211000 helix-loop-helix DNA-binding domain containing protein, expressed -
5 Sobic.004G188300 regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS2-11 - C2H2 zinc finger protein, expressed -
6 Sobic.002G001600 MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
7 Sobic.001G451000 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
8 Sobic.008G116500 plus-3 domain containing protein, expressed K15178: RNA polymerase-associated protein RTF1
9 Sobic.002G284200 peroxisomal multifunctional enzyme type 2, putative, expressed -
10 Sobic.001G024200 lipase class 3 family protein, putative, expressed -
11 Sobic.007G078000 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
12 Sobic.003G117000 late embryogenesis abundant protein, putative, expressed -
13 Sobic.003G121400 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@expressed protein -
14 Sobic.002G165300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K11111: TERF2, telomeric repeat-binding factor 2
15 Sobic.007G150200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MTD1, putative, expressed -
16 Sobic.010G218100 expressed protein -
17 Sobic.001G439500 acyl CoA binding protein, putative, expressed -
18 Sobic.003G093600 methyltransferase, putative, expressed -
19 Sobic.009G022200 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
20 Sobic.002G115801 - -


Gene co-expression network
sample Sobic001G222300 Sobic001G222300 Sobic007G037100 Sobic007G037100 Sobic001G222300--Sobic007G037100 Sobic005G162600 Sobic005G162600 Sobic001G222300--Sobic005G162600 Sobic008G101800 Sobic008G101800 Sobic001G222300--Sobic008G101800 Sobic007G211000 Sobic007G211000 Sobic001G222300--Sobic007G211000 Sobic004G188300 Sobic004G188300 Sobic001G222300--Sobic004G188300 Sobic002G001600 Sobic002G001600 Sobic001G222300--Sobic002G001600 Sobic001G451000 Sobic001G451000 Sobic001G222300--Sobic001G451000 Sobic008G116500 Sobic008G116500 Sobic001G222300--Sobic008G116500 Sobic002G284200 Sobic002G284200 Sobic001G222300--Sobic002G284200 Sobic006G082600 Sobic006G082600 Sobic007G037100--Sobic006G082600 Sobic007G037100--Sobic001G222300 Sobic007G037100--Sobic008G116500 Sobic007G037100--Sobic002G001600 Sobic010G124001 Sobic010G124001 Sobic007G037100--Sobic010G124001 Sobic007G037100--Sobic007G211000 Sobic007G078000 Sobic007G078000 Sobic007G037100--Sobic007G078000 Sobic001G162300 Sobic001G162300 Sobic007G037100--Sobic001G162300 Sobic002G283300 Sobic002G283300 Sobic007G037100--Sobic002G283300 Sobic005G162600--Sobic001G222300 Sobic005G162600--Sobic008G116500 Sobic005G162600--Sobic008G101800 Sobic001G439500 Sobic001G439500 Sobic005G162600--Sobic001G439500 Sobic003G093600 Sobic003G093600 Sobic005G162600--Sobic003G093600 Sobic007G008800 Sobic007G008800 Sobic005G162600--Sobic007G008800 Sobic006G129700 Sobic006G129700 Sobic005G162600--Sobic006G129700 Sobic005G162600--Sobic007G037100 Sobic003G204000 Sobic003G204000 Sobic005G162600--Sobic003G204000 Sobic008G101800--Sobic002G001600 Sobic008G073000 Sobic008G073000 Sobic008G101800--Sobic008G073000 Sobic008G101800--Sobic001G222300 Sobic001G206100 Sobic001G206100 Sobic008G101800--Sobic001G206100 Sobic008G101800--Sobic005G162600 Sobic008G101800--Sobic008G116500 Sobic004G332300 Sobic004G332300 Sobic008G101800--Sobic004G332300 Sobic007G185900 Sobic007G185900 Sobic008G101800--Sobic007G185900 Sobic002G045400 Sobic002G045400 Sobic008G101800--Sobic002G045400 Sobic001G024200 Sobic001G024200 Sobic007G211000--Sobic001G024200 Sobic004G112500 Sobic004G112500 Sobic007G211000--Sobic004G112500 Sobic007G211000--Sobic010G124001 Sobic003G117000 Sobic003G117000 Sobic007G211000--Sobic003G117000 Sobic001G272000 Sobic001G272000 Sobic007G211000--Sobic001G272000 Sobic001G243901 Sobic001G243901 Sobic007G211000--Sobic001G243901 Sobic005G117901 Sobic005G117901 Sobic007G211000--Sobic005G117901 Sobic004G212800 Sobic004G212800 Sobic007G211000--Sobic004G212800 Sobic010G248200 Sobic010G248200 Sobic007G211000--Sobic010G248200 Sobic003G026300 Sobic003G026300 Sobic004G188300--Sobic003G026300 Sobic004G188300--Sobic003G093600 Sobic004G188300--Sobic001G222300 Sobic007G150200 Sobic007G150200 Sobic004G188300--Sobic007G150200 Sobic009G183500 Sobic009G183500 Sobic004G188300--Sobic009G183500 Sobic007G023700 Sobic007G023700 Sobic004G188300--Sobic007G023700 Sobic006G257900 Sobic006G257900 Sobic004G188300--Sobic006G257900 Sobic005G167300 Sobic005G167300 Sobic004G188300--Sobic005G167300 Sobic010G218100 Sobic010G218100 Sobic004G188300--Sobic010G218100 Sobic002G001600--Sobic008G116500 Sobic001G543900 Sobic001G543900 Sobic002G001600--Sobic001G543900 Sobic002G313300 Sobic002G313300 Sobic002G001600--Sobic002G313300 Sobic002G001600--Sobic008G101800 Sobic002G001600--Sobic007G185900 Sobic002G166700 Sobic002G166700 Sobic002G001600--Sobic002G166700 Sobic008G106000 Sobic008G106000 Sobic002G001600--Sobic008G106000 Sobic002G001600--Sobic007G037100 Sobic002G166600 Sobic002G166600 Sobic002G001600--Sobic002G166600 Sobic001G451000--Sobic005G167300 Sobic002G115801 Sobic002G115801 Sobic001G451000--Sobic002G115801 Sobic010G260500 Sobic010G260500 Sobic001G451000--Sobic010G260500 Sobic001G451000--Sobic002G284200 Sobic003G333600 Sobic003G333600 Sobic001G451000--Sobic003G333600 Sobic001G451000--Sobic007G078000 Sobic001G451000--Sobic001G439500 Sobic004G198000 Sobic004G198000 Sobic001G451000--Sobic004G198000 Sobic004G196700 Sobic004G196700 Sobic001G451000--Sobic004G196700 Sobic008G116500--Sobic002G001600 Sobic008G116500--Sobic001G543900 Sobic007G011400 Sobic007G011400 Sobic008G116500--Sobic007G011400 Sobic008G116500--Sobic001G439500 Sobic006G080300 Sobic006G080300 Sobic008G116500--Sobic006G080300 Sobic008G116500--Sobic007G037100 Sobic008G116500--Sobic002G313300 Sobic001G477800 Sobic001G477800 Sobic008G116500--Sobic001G477800 Sobic008G116500--Sobic004G196700 Sobic002G284200--Sobic003G117000 Sobic002G284200--Sobic007G150200 Sobic002G284200--Sobic001G451000 Sobic002G284200--Sobic007G211000 Sobic002G284200--Sobic003G093600 Sobic002G284200--Sobic007G078000 Sobic002G284200--Sobic001G439500 Sobic002G165300 Sobic002G165300 Sobic002G284200--Sobic002G165300 Sobic002G284200--Sobic002G283300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.