Gene annotation
Transcriptome id Sobic.005G162600.1
Synonym
Functional annotation zinc knuckle domain containing protein, expressed
UniProt C5Y4X6
Pfam PF00098
Panther DB PTHR23002:SF54 PTHR23002
NCBI CDD KOG4400; E3 ubiquitin ligase interacting with arginine methyltransferase
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G43590 : zinc knuckle (CCHC-type) family protein
RAP-DB (Rice) LOC_Os11g36480.2 : zinc knuckle domain containing protein, expressed
MaizeGDB (Corn) Zm00025a015791 , Zm00025a033861
Brachypodium KQJ88125 , KQJ88124 , KQJ88122
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.005G162600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G222300 cyclin-dependent kinase inhibitor, putative, expressed -
2 Sobic.008G116500 plus-3 domain containing protein, expressed K15178: RNA polymerase-associated protein RTF1
3 Sobic.008G101800 expressed protein -
4 Sobic.001G439500 acyl CoA binding protein, putative, expressed -
5 Sobic.003G093600 methyltransferase, putative, expressed -
6 Sobic.007G008800 VHS and GAT domain containing protein, expressed -
7 Sobic.006G129700 amine oxidase, flavin-containing, domain containing protein, expressed K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase
8 Sobic.007G037100 MYB family transcription factor, putative, expressed -
9 Sobic.003G204000 expressed protein -
10 Sobic.004G188300 regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS2-11 - C2H2 zinc finger protein, expressed -
11 Sobic.002G221900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
12 Sobic.001G024200 lipase class 3 family protein, putative, expressed -
13 Sobic.007G211000 helix-loop-helix DNA-binding domain containing protein, expressed -
14 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
15 Sobic.003G026300 BES1/BZR1 homolog protein, putative, expressed -
16 Sobic.008G068800 cytokinin inducible protein, putative, expressed -
17 Sobic.002G001600 MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
18 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
19 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
20 Sobic.009G022200 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7


Gene co-expression network
sample Sobic005G162600 Sobic005G162600 Sobic001G222300 Sobic001G222300 Sobic005G162600--Sobic001G222300 Sobic008G116500 Sobic008G116500 Sobic005G162600--Sobic008G116500 Sobic008G101800 Sobic008G101800 Sobic005G162600--Sobic008G101800 Sobic001G439500 Sobic001G439500 Sobic005G162600--Sobic001G439500 Sobic003G093600 Sobic003G093600 Sobic005G162600--Sobic003G093600 Sobic007G008800 Sobic007G008800 Sobic005G162600--Sobic007G008800 Sobic006G129700 Sobic006G129700 Sobic005G162600--Sobic006G129700 Sobic007G037100 Sobic007G037100 Sobic005G162600--Sobic007G037100 Sobic003G204000 Sobic003G204000 Sobic005G162600--Sobic003G204000 Sobic001G222300--Sobic007G037100 Sobic001G222300--Sobic005G162600 Sobic001G222300--Sobic008G101800 Sobic007G211000 Sobic007G211000 Sobic001G222300--Sobic007G211000 Sobic004G188300 Sobic004G188300 Sobic001G222300--Sobic004G188300 Sobic002G001600 Sobic002G001600 Sobic001G222300--Sobic002G001600 Sobic001G451000 Sobic001G451000 Sobic001G222300--Sobic001G451000 Sobic001G222300--Sobic008G116500 Sobic002G284200 Sobic002G284200 Sobic001G222300--Sobic002G284200 Sobic008G116500--Sobic002G001600 Sobic001G543900 Sobic001G543900 Sobic008G116500--Sobic001G543900 Sobic007G011400 Sobic007G011400 Sobic008G116500--Sobic007G011400 Sobic008G116500--Sobic001G439500 Sobic006G080300 Sobic006G080300 Sobic008G116500--Sobic006G080300 Sobic008G116500--Sobic007G037100 Sobic002G313300 Sobic002G313300 Sobic008G116500--Sobic002G313300 Sobic001G477800 Sobic001G477800 Sobic008G116500--Sobic001G477800 Sobic004G196700 Sobic004G196700 Sobic008G116500--Sobic004G196700 Sobic008G101800--Sobic002G001600 Sobic008G073000 Sobic008G073000 Sobic008G101800--Sobic008G073000 Sobic008G101800--Sobic001G222300 Sobic001G206100 Sobic001G206100 Sobic008G101800--Sobic001G206100 Sobic008G101800--Sobic005G162600 Sobic008G101800--Sobic008G116500 Sobic004G332300 Sobic004G332300 Sobic008G101800--Sobic004G332300 Sobic007G185900 Sobic007G185900 Sobic008G101800--Sobic007G185900 Sobic002G045400 Sobic002G045400 Sobic008G101800--Sobic002G045400 Sobic001G024200 Sobic001G024200 Sobic001G439500--Sobic001G024200 Sobic004G143700 Sobic004G143700 Sobic001G439500--Sobic004G143700 Sobic001G439500--Sobic007G211000 Sobic001G439500--Sobic008G116500 Sobic004G112500 Sobic004G112500 Sobic001G439500--Sobic004G112500 Sobic001G439500--Sobic001G451000 Sobic001G439500--Sobic001G543900 Sobic001G439500--Sobic002G001600 Sobic002G283300 Sobic002G283300 Sobic001G439500--Sobic002G283300 Sobic007G023700 Sobic007G023700 Sobic003G093600--Sobic007G023700 Sobic009G022200 Sobic009G022200 Sobic003G093600--Sobic009G022200 Sobic004G271900 Sobic004G271900 Sobic003G093600--Sobic004G271900 Sobic007G205800 Sobic007G205800 Sobic003G093600--Sobic007G205800 Sobic003G093600--Sobic004G143700 Sobic009G156000 Sobic009G156000 Sobic003G093600--Sobic009G156000 Sobic009G087800 Sobic009G087800 Sobic003G093600--Sobic009G087800 Sobic003G258400 Sobic003G258400 Sobic003G093600--Sobic003G258400 Sobic001G424700 Sobic001G424700 Sobic003G093600--Sobic001G424700 Sobic003G026300 Sobic003G026300 Sobic007G008800--Sobic003G026300 Sobic004G088400 Sobic004G088400 Sobic007G008800--Sobic004G088400 SobicK009900 SobicK009900 Sobic007G008800--SobicK009900 Sobic002G177400 Sobic002G177400 Sobic007G008800--Sobic002G177400 Sobic004G076732 Sobic004G076732 Sobic007G008800--Sobic004G076732 Sobic002G410200 Sobic002G410200 Sobic007G008800--Sobic002G410200 Sobic007G008800--Sobic001G024200 Sobic005G139800 Sobic005G139800 Sobic007G008800--Sobic005G139800 Sobic001G271801 Sobic001G271801 Sobic007G008800--Sobic001G271801 Sobic004G061900 Sobic004G061900 Sobic006G129700--Sobic004G061900 Sobic003G315332 Sobic003G315332 Sobic006G129700--Sobic003G315332 Sobic007G094801 Sobic007G094801 Sobic006G129700--Sobic007G094801 Sobic008G117200 Sobic008G117200 Sobic006G129700--Sobic008G117200 Sobic006G129700--Sobic005G162600 Sobic006G129700--Sobic002G177400 Sobic006G129700--Sobic007G011400 Sobic008G034600 Sobic008G034600 Sobic006G129700--Sobic008G034600 Sobic009G030300 Sobic009G030300 Sobic006G129700--Sobic009G030300 Sobic006G082600 Sobic006G082600 Sobic007G037100--Sobic006G082600 Sobic007G037100--Sobic001G222300 Sobic007G037100--Sobic008G116500 Sobic007G037100--Sobic002G001600 Sobic010G124001 Sobic010G124001 Sobic007G037100--Sobic010G124001 Sobic007G037100--Sobic007G211000 Sobic007G078000 Sobic007G078000 Sobic007G037100--Sobic007G078000 Sobic001G162300 Sobic001G162300 Sobic007G037100--Sobic001G162300 Sobic007G037100--Sobic002G283300 Sobic003G204000--Sobic001G024200 Sobic008G068800 Sobic008G068800 Sobic003G204000--Sobic008G068800 Sobic004G212800 Sobic004G212800 Sobic003G204000--Sobic004G212800 Sobic003G204000--Sobic008G116500 Sobic004G169501 Sobic004G169501 Sobic003G204000--Sobic004G169501 Sobic003G204000--Sobic001G543900 Sobic003G204000--Sobic004G112500 Sobic002G297800 Sobic002G297800 Sobic003G204000--Sobic002G297800 Sobic003G204000--Sobic003G315332
Octagon: transcription factors


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